Alu element (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Alu element" in English language version.

refsWebsite

Global rank English rank

49nih.gov

4^th place

34doi.org

2^nd place

15semanticscholar.org

11^th place

8^th place

11harvard.edu

18^th place

17^th place

2worldcat.org

5^th place

1nature.com

234^th place

397^th place

1unige.ch

6,897^th place

6,705^th place

1umich.edu

459^th place

360^th place

1web.archive.org

1^st place

1snpedia.com

low place

1cshlp.org

low place

cshlp.org

genome.cshlp.org

Dulai, K. S; von Dornum, M; Mollon, J. D; Hunt, D. M (1999). "The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates". Genome Research. 9 (7): 629–38. doi:10.1101/gr.9.7.629. PMID 10413401. S2CID 10637615.

doi.org

Schmid, Carl W; Deininger, Prescott L (1975). "Sequence organization of the human genome". Cell. 6 (3): 345–58. doi:10.1016/0092-8674(75)90184-1. PMID 1052772. S2CID 42804857.
Szmulewicz, Martin N; Novick, Gabriel E; Herrera, Rene J (1998). "Effects of Alu insertions on gene function". Electrophoresis. 19 (8–9): 1260–4. doi:10.1002/elps.1150190806. PMID 9694261. S2CID 45917758.
Kidwell, Margaret G; Lisch, Damon R (2001). "Perspective: Transposable Elements, Parasitic Dna, and Genome Evolution". Evolution. 55 (1): 1–24. doi:10.1554/0014-3820(2001)055[0001:ptepda]2.0.co;2. PMID 11263730. S2CID 25273865.
Kriegs, Jan Ole; Churakov, Gennady; Jurka, Jerzy; Brosius, Jürgen; Schmitz, Jürgen (2007). "Evolutionary history of 7SL RNA-derived SINEs in Supraprimates". Trends in Genetics. 23 (4): 158–61. doi:10.1016/j.tig.2007.02.002. PMID 17307271.
Arcot, Santosh S.; Wang, Zhenyuan; Weber, James L.; Deininger, Prescott L.; Batzer, Mark A. (September 1995). "Alu Repeats: A Source for the Genesis of Primate Microsatellites". Genomics. 29 (1): 136–144. doi:10.1006/geno.1995.1224. ISSN 0888-7543. PMID 8530063.
Häsler, Julien; Strub, Katharina (2006). "Alu elements as regulators of gene expression". Nucleic Acids Research. 34 (19): 5491–7. doi:10.1093/nar/gkl706. PMC 1636486. PMID 17020921.
Roy-Engel, A. M; Carroll, M. L; Vogel, E; Garber, R. K; Nguyen, S. V; Salem, A. H; Batzer, M. A; Deininger, P. L (2001). "Alu insertion polymorphisms for the study of human genomic diversity". Genetics. 159 (1): 279–90. doi:10.1093/genetics/159.1.279. PMC 1461783. PMID 11560904.
Jurka, J; Smith, T (1988). "A fundamental division in the Alu family of repeated sequences". Proceedings of the National Academy of Sciences. 85 (13): 4775–8. Bibcode:1988PNAS...85.4775J. doi:10.1073/pnas.85.13.4775. PMC 280518. PMID 3387438.
Bennett, E. A; Keller, H; Mills, R. E; Schmidt, S; Moran, J. V; Weichenrieder, O; Devine, S. E (2008). "Active Alu retrotransposons in the human genome". Genome Research. 18 (12): 1875–83. doi:10.1101/gr.081737.108. PMC 2593586. PMID 18836035.
Richard Shen, M; Batzer, Mark A; Deininger, Prescott L (1991). "Evolution of the master Alu gene(s)". Journal of Molecular Evolution. 33 (4): 311–20. Bibcode:1991JMolE..33..311R. doi:10.1007/bf02102862. PMID 1774786. S2CID 13091552.
Tsirigos, Aristotelis; Rigoutsos, Isidore; Stormo, Gary D. (18 December 2009). "Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes". PLOS Computational Biology. 5 (12): e1000610. Bibcode:2009PLSCB...5E0610T. doi:10.1371/journal.pcbi.1000610. PMC 2784220. PMID 20019790.
Kojima, K. K. (16 August 2010). "Alu Monomer Revisited: Recent Generation of Alu Monomers". Molecular Biology and Evolution. 28 (1): 13–15. doi:10.1093/molbev/msq218. PMID 20713470.
Conti, A; Carnevali, D; Bollati, V; Fustinoni, S; Pellegrini, M; Dieci, G (January 2015). "Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data". Nucleic Acids Research. 43 (2): 817–35. doi:10.1093/nar/gku1361. PMC 4333407. PMID 25550429.
Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element". Proceedings of the National Academy of Sciences. 92 (18): 8229–33. Bibcode:1995PNAS...92.8229V. doi:10.1073/pnas.92.18.8229. PMC 41130. PMID 7667273.
Ullu E, Tschudi C (1984). "Alu sequences are processed 7SL RNA genes". Nature. 312 (5990): 171–2. Bibcode:1984Natur.312..171U. doi:10.1038/312171a0. PMID 6209580. S2CID 4328237.
Britten, R. J (1996). "DNA sequence insertion and evolutionary variation in gene regulation". Proceedings of the National Academy of Sciences of the United States of America. 93 (18): 9374–7. Bibcode:1996PNAS...93.9374B. doi:10.1073/pnas.93.18.9374. PMC 38434. PMID 8790336.
Kramerov, D; Vassetzky, N (2005). "Short Retroposons in Eukaryotic Genomes". International Review of Cytology. 247: 165–221. doi:10.1016/S0074-7696(05)47004-7. PMID 16344113.
Weichenrieder, Oliver; Wild, Klemens; Strub, Katharina; Cusack, Stephen (2000). "Structure and assembly of the Alu domain of the mammalian signal recognition particle". Nature. 408 (6809): 167–73. Bibcode:2000Natur.408..167W. doi:10.1038/35041507. PMID 11089964. S2CID 4427070.
Terreros, Maria C.; Alfonso-Sanchez, Miguel A.; Novick; Luis; Lacau; Lowery; Regueiro; Herrera (September 11, 2009). "Insights on human evolution: an analysis of Alu insertion polymorphisms". Journal of Human Genetics. 54 (10): 603–611. doi:10.1038/jhg.2009.86. PMID 19745832. S2CID 8153502.
Chimpanzee Sequencing Analysis Consortium (2005). "Initial sequence of the chimpanzee genome and comparison with the human genome". Nature. 437 (7055): 69–87. Bibcode:2005Natur.437...69.. doi:10.1038/nature04072. PMID 16136131. S2CID 2638825.
Norris, J; Fan, D; Aleman, C; Marks, J. R; Futreal, P. A; Wiseman, R. W; Iglehart, J. D; Deininger, P. L; McDonnell, D. P (1995). "Identification of a new subclass of Alu DNA repeats that can function as estrogen receptor-dependent transcriptional enhancers". The Journal of Biological Chemistry. 270 (39): 22777–82. doi:10.1074/jbc.270.39.22777. PMID 7559405. S2CID 45796017.
Schmid, C. W (1998). "Does SINE evolution preclude Alu function?". Nucleic Acids Research. 26 (20): 4541–50. doi:10.1093/nar/26.20.4541. PMC 147893. PMID 9753719.
Lander, Eric S; Linton, Lauren M; Birren, Bruce; Nusbaum, Chad; Zody, Michael C; Baldwin, Jennifer; Devon, Keri; Dewar, Ken; Doyle, Michael; Fitzhugh, William; Funke, Roel; Gage, Diane; Harris, Katrina; Heaford, Andrew; Howland, John; Kann, Lisa; Lehoczky, Jessica; Levine, Rosie; McEwan, Paul; McKernan, Kevin; Meldrim, James; Mesirov, Jill P; Miranda, Cher; Morris, William; Naylor, Jerome; Raymond, Christina; Rosetti, Mark; Santos, Ralph; Sheridan, Andrew; et al. (2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Deininger, Prescott L; Batzer, Mark A (1999). "Alu Repeats and Human Disease". Molecular Genetics and Metabolism. 67 (3): 183–93. doi:10.1006/mgme.1999.2864. PMID 10381326. S2CID 15651921.
Batzer, Mark A; Deininger, Prescott L (2002). "Alu Repeats and Human Genomic Diversity". Nature Reviews Genetics. 3 (5): 370–9. doi:10.1038/nrg798. PMID 11988762. S2CID 205486422.
Shen, S; Lin, L; Cai, J. J; Jiang, P; Kenkel, E. J; Stroik, M. R; Sato, S; Davidson, B. L; Xing, Y (2011). "Widespread establishment and regulatory impact of Alu exons in human genes". Proceedings of the National Academy of Sciences. 108 (7): 2837–42. Bibcode:2011PNAS..108.2837S. doi:10.1073/pnas.1012834108. PMC 3041063. PMID 21282640.
Cordaux, Richard; Batzer, Mark A (2009). "The impact of retrotransposons on human genome evolution". Nature Reviews Genetics. 10 (10): 691–703. doi:10.1038/nrg2640. PMC 2884099. PMID 19763152.
Nyström-Lahti, Minna; Kristo, Paula; Nicolaides, Nicholas C; Chang, Sheng-Yung; Aaltonen, Lauri A; Moisio, Anu-Liisa; Järvinen, Heikki J; Mecklin, Jukka-Pekka; Kinzler, Kenneth W; Vogelstein, Bert; de la Chapelle, Albert; Peltomäki, Päivi (1995). "Founding mutations and Alu-mediated recombination in hereditary colon cancer". Nature Medicine. 1 (11): 1203–6. doi:10.1038/nm1195-1203. PMID 7584997. S2CID 39468812.
Jin, Lingling; McQuillan, Ian; Li, Longhai (2017). "Computational identification of harmful mutation regions to the activity of transposable elements". BMC Genomics. 18 (Suppl 9): 862. doi:10.1186/s12864-017-4227-z. PMC 5773891. PMID 29219079.
Deininger, Prescott (2011). "Alu elements: Know the SINEs". Genome Biology. 12 (12): 236. doi:10.1186/gb-2011-12-12-236. PMC 3334610. PMID 22204421.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.
Cortese, A.; Simone, R.; Sullivan, R.; Vandrovcova, J.; Tariq, H.; Yau, W. Y.; Humphrey, J.; Jaunmuktane, Z.; Sivakumar, P.; Polke, J.; Ilyas, M.; Tribollet, E.; Tomaselli, P. J.; Devigili, G.; Callegari, I.; Versino, M.; Salpietro, V.; Efthymiou, S.; Kaski, D.; Wood, N. W.; Andrade, N. S.; Buglo, E.; Rebelo, A.; Rossor, A. M.; Bronstein, A.; Fratta, P.; Marques, W. J.; Züchner, S.; Reilly, M. M.; Houlden, H. (2019). "Biallelic expansion of an intronic repeat in RFC1 is a common cause of late-onset ataxia". Nat Genet. 51 (4): 649–658. doi:10.1038/s41588-019-0372-4. PMC 6709527. PMID 30926972.
Puthucheary, Zudin; Skipworth, James RA; Rawal, Jai; Loosemore, Mike; Van Someren, Ken; Montgomery, Hugh E (2011). "The ACE Gene and Human Performance". Sports Medicine. 41 (6): 433–48. doi:10.2165/11588720-000000000-00000. PMID 21615186. S2CID 42531424.
Dulai, K. S; von Dornum, M; Mollon, J. D; Hunt, D. M (1999). "The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates". Genome Research. 9 (7): 629–38. doi:10.1101/gr.9.7.629. PMID 10413401. S2CID 10637615.

harvard.edu

ui.adsabs.harvard.edu

Jurka, J; Smith, T (1988). "A fundamental division in the Alu family of repeated sequences". Proceedings of the National Academy of Sciences. 85 (13): 4775–8. Bibcode:1988PNAS...85.4775J. doi:10.1073/pnas.85.13.4775. PMC 280518. PMID 3387438.
Richard Shen, M; Batzer, Mark A; Deininger, Prescott L (1991). "Evolution of the master Alu gene(s)". Journal of Molecular Evolution. 33 (4): 311–20. Bibcode:1991JMolE..33..311R. doi:10.1007/bf02102862. PMID 1774786. S2CID 13091552.
Tsirigos, Aristotelis; Rigoutsos, Isidore; Stormo, Gary D. (18 December 2009). "Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes". PLOS Computational Biology. 5 (12): e1000610. Bibcode:2009PLSCB...5E0610T. doi:10.1371/journal.pcbi.1000610. PMC 2784220. PMID 20019790.
Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element". Proceedings of the National Academy of Sciences. 92 (18): 8229–33. Bibcode:1995PNAS...92.8229V. doi:10.1073/pnas.92.18.8229. PMC 41130. PMID 7667273.
Ullu E, Tschudi C (1984). "Alu sequences are processed 7SL RNA genes". Nature. 312 (5990): 171–2. Bibcode:1984Natur.312..171U. doi:10.1038/312171a0. PMID 6209580. S2CID 4328237.
Britten, R. J (1996). "DNA sequence insertion and evolutionary variation in gene regulation". Proceedings of the National Academy of Sciences of the United States of America. 93 (18): 9374–7. Bibcode:1996PNAS...93.9374B. doi:10.1073/pnas.93.18.9374. PMC 38434. PMID 8790336.
Weichenrieder, Oliver; Wild, Klemens; Strub, Katharina; Cusack, Stephen (2000). "Structure and assembly of the Alu domain of the mammalian signal recognition particle". Nature. 408 (6809): 167–73. Bibcode:2000Natur.408..167W. doi:10.1038/35041507. PMID 11089964. S2CID 4427070.
Chimpanzee Sequencing Analysis Consortium (2005). "Initial sequence of the chimpanzee genome and comparison with the human genome". Nature. 437 (7055): 69–87. Bibcode:2005Natur.437...69.. doi:10.1038/nature04072. PMID 16136131. S2CID 2638825.
Lander, Eric S; Linton, Lauren M; Birren, Bruce; Nusbaum, Chad; Zody, Michael C; Baldwin, Jennifer; Devon, Keri; Dewar, Ken; Doyle, Michael; Fitzhugh, William; Funke, Roel; Gage, Diane; Harris, Katrina; Heaford, Andrew; Howland, John; Kann, Lisa; Lehoczky, Jessica; Levine, Rosie; McEwan, Paul; McKernan, Kevin; Meldrim, James; Mesirov, Jill P; Miranda, Cher; Morris, William; Naylor, Jerome; Raymond, Christina; Rosetti, Mark; Santos, Ralph; Sheridan, Andrew; et al. (2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Shen, S; Lin, L; Cai, J. J; Jiang, P; Kenkel, E. J; Stroik, M. R; Sato, S; Davidson, B. L; Xing, Y (2011). "Widespread establishment and regulatory impact of Alu exons in human genes". Proceedings of the National Academy of Sciences. 108 (7): 2837–42. Bibcode:2011PNAS..108.2837S. doi:10.1073/pnas.1012834108. PMC 3041063. PMID 21282640.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.

nature.com

Pray, Leslie (2008). "Functions and Utility of Alu Jumping Genes". Scitable.com. Nature. Retrieved 26 June 2019.

nih.gov

pubmed.ncbi.nlm.nih.gov

Schmid, Carl W; Deininger, Prescott L (1975). "Sequence organization of the human genome". Cell. 6 (3): 345–58. doi:10.1016/0092-8674(75)90184-1. PMID 1052772. S2CID 42804857.
Szmulewicz, Martin N; Novick, Gabriel E; Herrera, Rene J (1998). "Effects of Alu insertions on gene function". Electrophoresis. 19 (8–9): 1260–4. doi:10.1002/elps.1150190806. PMID 9694261. S2CID 45917758.
Kidwell, Margaret G; Lisch, Damon R (2001). "Perspective: Transposable Elements, Parasitic Dna, and Genome Evolution". Evolution. 55 (1): 1–24. doi:10.1554/0014-3820(2001)055[0001:ptepda]2.0.co;2. PMID 11263730. S2CID 25273865.
Kriegs, Jan Ole; Churakov, Gennady; Jurka, Jerzy; Brosius, Jürgen; Schmitz, Jürgen (2007). "Evolutionary history of 7SL RNA-derived SINEs in Supraprimates". Trends in Genetics. 23 (4): 158–61. doi:10.1016/j.tig.2007.02.002. PMID 17307271.
Arcot, Santosh S.; Wang, Zhenyuan; Weber, James L.; Deininger, Prescott L.; Batzer, Mark A. (September 1995). "Alu Repeats: A Source for the Genesis of Primate Microsatellites". Genomics. 29 (1): 136–144. doi:10.1006/geno.1995.1224. ISSN 0888-7543. PMID 8530063.
Häsler, Julien; Strub, Katharina (2006). "Alu elements as regulators of gene expression". Nucleic Acids Research. 34 (19): 5491–7. doi:10.1093/nar/gkl706. PMC 1636486. PMID 17020921.
Roy-Engel, A. M; Carroll, M. L; Vogel, E; Garber, R. K; Nguyen, S. V; Salem, A. H; Batzer, M. A; Deininger, P. L (2001). "Alu insertion polymorphisms for the study of human genomic diversity". Genetics. 159 (1): 279–90. doi:10.1093/genetics/159.1.279. PMC 1461783. PMID 11560904.
Jurka, J; Smith, T (1988). "A fundamental division in the Alu family of repeated sequences". Proceedings of the National Academy of Sciences. 85 (13): 4775–8. Bibcode:1988PNAS...85.4775J. doi:10.1073/pnas.85.13.4775. PMC 280518. PMID 3387438.
Bennett, E. A; Keller, H; Mills, R. E; Schmidt, S; Moran, J. V; Weichenrieder, O; Devine, S. E (2008). "Active Alu retrotransposons in the human genome". Genome Research. 18 (12): 1875–83. doi:10.1101/gr.081737.108. PMC 2593586. PMID 18836035.
Richard Shen, M; Batzer, Mark A; Deininger, Prescott L (1991). "Evolution of the master Alu gene(s)". Journal of Molecular Evolution. 33 (4): 311–20. Bibcode:1991JMolE..33..311R. doi:10.1007/bf02102862. PMID 1774786. S2CID 13091552.
Tsirigos, Aristotelis; Rigoutsos, Isidore; Stormo, Gary D. (18 December 2009). "Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes". PLOS Computational Biology. 5 (12): e1000610. Bibcode:2009PLSCB...5E0610T. doi:10.1371/journal.pcbi.1000610. PMC 2784220. PMID 20019790.
Kojima, K. K. (16 August 2010). "Alu Monomer Revisited: Recent Generation of Alu Monomers". Molecular Biology and Evolution. 28 (1): 13–15. doi:10.1093/molbev/msq218. PMID 20713470.
Conti, A; Carnevali, D; Bollati, V; Fustinoni, S; Pellegrini, M; Dieci, G (January 2015). "Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data". Nucleic Acids Research. 43 (2): 817–35. doi:10.1093/nar/gku1361. PMC 4333407. PMID 25550429.
Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element". Proceedings of the National Academy of Sciences. 92 (18): 8229–33. Bibcode:1995PNAS...92.8229V. doi:10.1073/pnas.92.18.8229. PMC 41130. PMID 7667273.
Ullu E, Tschudi C (1984). "Alu sequences are processed 7SL RNA genes". Nature. 312 (5990): 171–2. Bibcode:1984Natur.312..171U. doi:10.1038/312171a0. PMID 6209580. S2CID 4328237.
Britten, R. J (1996). "DNA sequence insertion and evolutionary variation in gene regulation". Proceedings of the National Academy of Sciences of the United States of America. 93 (18): 9374–7. Bibcode:1996PNAS...93.9374B. doi:10.1073/pnas.93.18.9374. PMC 38434. PMID 8790336.
Kramerov, D; Vassetzky, N (2005). "Short Retroposons in Eukaryotic Genomes". International Review of Cytology. 247: 165–221. doi:10.1016/S0074-7696(05)47004-7. PMID 16344113.
Weichenrieder, Oliver; Wild, Klemens; Strub, Katharina; Cusack, Stephen (2000). "Structure and assembly of the Alu domain of the mammalian signal recognition particle". Nature. 408 (6809): 167–73. Bibcode:2000Natur.408..167W. doi:10.1038/35041507. PMID 11089964. S2CID 4427070.
Terreros, Maria C.; Alfonso-Sanchez, Miguel A.; Novick; Luis; Lacau; Lowery; Regueiro; Herrera (September 11, 2009). "Insights on human evolution: an analysis of Alu insertion polymorphisms". Journal of Human Genetics. 54 (10): 603–611. doi:10.1038/jhg.2009.86. PMID 19745832. S2CID 8153502.
Chimpanzee Sequencing Analysis Consortium (2005). "Initial sequence of the chimpanzee genome and comparison with the human genome". Nature. 437 (7055): 69–87. Bibcode:2005Natur.437...69.. doi:10.1038/nature04072. PMID 16136131. S2CID 2638825.
Norris, J; Fan, D; Aleman, C; Marks, J. R; Futreal, P. A; Wiseman, R. W; Iglehart, J. D; Deininger, P. L; McDonnell, D. P (1995). "Identification of a new subclass of Alu DNA repeats that can function as estrogen receptor-dependent transcriptional enhancers". The Journal of Biological Chemistry. 270 (39): 22777–82. doi:10.1074/jbc.270.39.22777. PMID 7559405. S2CID 45796017.
Schmid, C. W (1998). "Does SINE evolution preclude Alu function?". Nucleic Acids Research. 26 (20): 4541–50. doi:10.1093/nar/26.20.4541. PMC 147893. PMID 9753719.
Lander, Eric S; Linton, Lauren M; Birren, Bruce; Nusbaum, Chad; Zody, Michael C; Baldwin, Jennifer; Devon, Keri; Dewar, Ken; Doyle, Michael; Fitzhugh, William; Funke, Roel; Gage, Diane; Harris, Katrina; Heaford, Andrew; Howland, John; Kann, Lisa; Lehoczky, Jessica; Levine, Rosie; McEwan, Paul; McKernan, Kevin; Meldrim, James; Mesirov, Jill P; Miranda, Cher; Morris, William; Naylor, Jerome; Raymond, Christina; Rosetti, Mark; Santos, Ralph; Sheridan, Andrew; et al. (2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Deininger, Prescott L; Batzer, Mark A (1999). "Alu Repeats and Human Disease". Molecular Genetics and Metabolism. 67 (3): 183–93. doi:10.1006/mgme.1999.2864. PMID 10381326. S2CID 15651921.
Batzer, Mark A; Deininger, Prescott L (2002). "Alu Repeats and Human Genomic Diversity". Nature Reviews Genetics. 3 (5): 370–9. doi:10.1038/nrg798. PMID 11988762. S2CID 205486422.
Shen, S; Lin, L; Cai, J. J; Jiang, P; Kenkel, E. J; Stroik, M. R; Sato, S; Davidson, B. L; Xing, Y (2011). "Widespread establishment and regulatory impact of Alu exons in human genes". Proceedings of the National Academy of Sciences. 108 (7): 2837–42. Bibcode:2011PNAS..108.2837S. doi:10.1073/pnas.1012834108. PMC 3041063. PMID 21282640.
Cordaux, Richard; Batzer, Mark A (2009). "The impact of retrotransposons on human genome evolution". Nature Reviews Genetics. 10 (10): 691–703. doi:10.1038/nrg2640. PMC 2884099. PMID 19763152.
Nyström-Lahti, Minna; Kristo, Paula; Nicolaides, Nicholas C; Chang, Sheng-Yung; Aaltonen, Lauri A; Moisio, Anu-Liisa; Järvinen, Heikki J; Mecklin, Jukka-Pekka; Kinzler, Kenneth W; Vogelstein, Bert; de la Chapelle, Albert; Peltomäki, Päivi (1995). "Founding mutations and Alu-mediated recombination in hereditary colon cancer". Nature Medicine. 1 (11): 1203–6. doi:10.1038/nm1195-1203. PMID 7584997. S2CID 39468812.
Jin, Lingling; McQuillan, Ian; Li, Longhai (2017). "Computational identification of harmful mutation regions to the activity of transposable elements". BMC Genomics. 18 (Suppl 9): 862. doi:10.1186/s12864-017-4227-z. PMC 5773891. PMID 29219079.
Deininger, Prescott (2011). "Alu elements: Know the SINEs". Genome Biology. 12 (12): 236. doi:10.1186/gb-2011-12-12-236. PMC 3334610. PMID 22204421.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.
Cortese, A.; Simone, R.; Sullivan, R.; Vandrovcova, J.; Tariq, H.; Yau, W. Y.; Humphrey, J.; Jaunmuktane, Z.; Sivakumar, P.; Polke, J.; Ilyas, M.; Tribollet, E.; Tomaselli, P. J.; Devigili, G.; Callegari, I.; Versino, M.; Salpietro, V.; Efthymiou, S.; Kaski, D.; Wood, N. W.; Andrade, N. S.; Buglo, E.; Rebelo, A.; Rossor, A. M.; Bronstein, A.; Fratta, P.; Marques, W. J.; Züchner, S.; Reilly, M. M.; Houlden, H. (2019). "Biallelic expansion of an intronic repeat in RFC1 is a common cause of late-onset ataxia". Nat Genet. 51 (4): 649–658. doi:10.1038/s41588-019-0372-4. PMC 6709527. PMID 30926972.
Puthucheary, Zudin; Skipworth, James RA; Rawal, Jai; Loosemore, Mike; Van Someren, Ken; Montgomery, Hugh E (2011). "The ACE Gene and Human Performance". Sports Medicine. 41 (6): 433–48. doi:10.2165/11588720-000000000-00000. PMID 21615186. S2CID 42531424.
Dulai, K. S; von Dornum, M; Mollon, J. D; Hunt, D. M (1999). "The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates". Genome Research. 9 (7): 629–38. doi:10.1101/gr.9.7.629. PMID 10413401. S2CID 10637615.

ncbi.nlm.nih.gov

Häsler, Julien; Strub, Katharina (2006). "Alu elements as regulators of gene expression". Nucleic Acids Research. 34 (19): 5491–7. doi:10.1093/nar/gkl706. PMC 1636486. PMID 17020921.
Roy-Engel, A. M; Carroll, M. L; Vogel, E; Garber, R. K; Nguyen, S. V; Salem, A. H; Batzer, M. A; Deininger, P. L (2001). "Alu insertion polymorphisms for the study of human genomic diversity". Genetics. 159 (1): 279–90. doi:10.1093/genetics/159.1.279. PMC 1461783. PMID 11560904.
Jurka, J; Smith, T (1988). "A fundamental division in the Alu family of repeated sequences". Proceedings of the National Academy of Sciences. 85 (13): 4775–8. Bibcode:1988PNAS...85.4775J. doi:10.1073/pnas.85.13.4775. PMC 280518. PMID 3387438.
Bennett, E. A; Keller, H; Mills, R. E; Schmidt, S; Moran, J. V; Weichenrieder, O; Devine, S. E (2008). "Active Alu retrotransposons in the human genome". Genome Research. 18 (12): 1875–83. doi:10.1101/gr.081737.108. PMC 2593586. PMID 18836035.
Tsirigos, Aristotelis; Rigoutsos, Isidore; Stormo, Gary D. (18 December 2009). "Alu and B1 Repeats Have Been Selectively Retained in the Upstream and Intronic Regions of Genes of Specific Functional Classes". PLOS Computational Biology. 5 (12): e1000610. Bibcode:2009PLSCB...5E0610T. doi:10.1371/journal.pcbi.1000610. PMC 2784220. PMID 20019790.
Conti, A; Carnevali, D; Bollati, V; Fustinoni, S; Pellegrini, M; Dieci, G (January 2015). "Identification of RNA polymerase III-transcribed Alu loci by computational screening of RNA-Seq data". Nucleic Acids Research. 43 (2): 817–35. doi:10.1093/nar/gku1361. PMC 4333407. PMID 25550429.
Vansant, G; Reynolds, W. F (1995). "The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element". Proceedings of the National Academy of Sciences. 92 (18): 8229–33. Bibcode:1995PNAS...92.8229V. doi:10.1073/pnas.92.18.8229. PMC 41130. PMID 7667273.
Britten, R. J (1996). "DNA sequence insertion and evolutionary variation in gene regulation". Proceedings of the National Academy of Sciences of the United States of America. 93 (18): 9374–7. Bibcode:1996PNAS...93.9374B. doi:10.1073/pnas.93.18.9374. PMC 38434. PMID 8790336.
Schmid, C. W (1998). "Does SINE evolution preclude Alu function?". Nucleic Acids Research. 26 (20): 4541–50. doi:10.1093/nar/26.20.4541. PMC 147893. PMID 9753719.
Shen, S; Lin, L; Cai, J. J; Jiang, P; Kenkel, E. J; Stroik, M. R; Sato, S; Davidson, B. L; Xing, Y (2011). "Widespread establishment and regulatory impact of Alu exons in human genes". Proceedings of the National Academy of Sciences. 108 (7): 2837–42. Bibcode:2011PNAS..108.2837S. doi:10.1073/pnas.1012834108. PMC 3041063. PMID 21282640.
Cordaux, Richard; Batzer, Mark A (2009). "The impact of retrotransposons on human genome evolution". Nature Reviews Genetics. 10 (10): 691–703. doi:10.1038/nrg2640. PMC 2884099. PMID 19763152.
Jin, Lingling; McQuillan, Ian; Li, Longhai (2017). "Computational identification of harmful mutation regions to the activity of transposable elements". BMC Genomics. 18 (Suppl 9): 862. doi:10.1186/s12864-017-4227-z. PMC 5773891. PMID 29219079.
Deininger, Prescott (2011). "Alu elements: Know the SINEs". Genome Biology. 12 (12): 236. doi:10.1186/gb-2011-12-12-236. PMC 3334610. PMID 22204421.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.
Cortese, A.; Simone, R.; Sullivan, R.; Vandrovcova, J.; Tariq, H.; Yau, W. Y.; Humphrey, J.; Jaunmuktane, Z.; Sivakumar, P.; Polke, J.; Ilyas, M.; Tribollet, E.; Tomaselli, P. J.; Devigili, G.; Callegari, I.; Versino, M.; Salpietro, V.; Efthymiou, S.; Kaski, D.; Wood, N. W.; Andrade, N. S.; Buglo, E.; Rebelo, A.; Rossor, A. M.; Bronstein, A.; Fratta, P.; Marques, W. J.; Züchner, S.; Reilly, M. M.; Houlden, H. (2019). "Biallelic expansion of an intronic repeat in RFC1 is a common cause of late-onset ataxia". Nat Genet. 51 (4): 649–658. doi:10.1038/s41588-019-0372-4. PMC 6709527. PMID 30926972.

semanticscholar.org

api.semanticscholar.org

Schmid, Carl W; Deininger, Prescott L (1975). "Sequence organization of the human genome". Cell. 6 (3): 345–58. doi:10.1016/0092-8674(75)90184-1. PMID 1052772. S2CID 42804857.
Szmulewicz, Martin N; Novick, Gabriel E; Herrera, Rene J (1998). "Effects of Alu insertions on gene function". Electrophoresis. 19 (8–9): 1260–4. doi:10.1002/elps.1150190806. PMID 9694261. S2CID 45917758.
Kidwell, Margaret G; Lisch, Damon R (2001). "Perspective: Transposable Elements, Parasitic Dna, and Genome Evolution". Evolution. 55 (1): 1–24. doi:10.1554/0014-3820(2001)055[0001:ptepda]2.0.co;2. PMID 11263730. S2CID 25273865.
Richard Shen, M; Batzer, Mark A; Deininger, Prescott L (1991). "Evolution of the master Alu gene(s)". Journal of Molecular Evolution. 33 (4): 311–20. Bibcode:1991JMolE..33..311R. doi:10.1007/bf02102862. PMID 1774786. S2CID 13091552.
Ullu E, Tschudi C (1984). "Alu sequences are processed 7SL RNA genes". Nature. 312 (5990): 171–2. Bibcode:1984Natur.312..171U. doi:10.1038/312171a0. PMID 6209580. S2CID 4328237.
Weichenrieder, Oliver; Wild, Klemens; Strub, Katharina; Cusack, Stephen (2000). "Structure and assembly of the Alu domain of the mammalian signal recognition particle". Nature. 408 (6809): 167–73. Bibcode:2000Natur.408..167W. doi:10.1038/35041507. PMID 11089964. S2CID 4427070.
Terreros, Maria C.; Alfonso-Sanchez, Miguel A.; Novick; Luis; Lacau; Lowery; Regueiro; Herrera (September 11, 2009). "Insights on human evolution: an analysis of Alu insertion polymorphisms". Journal of Human Genetics. 54 (10): 603–611. doi:10.1038/jhg.2009.86. PMID 19745832. S2CID 8153502.
Chimpanzee Sequencing Analysis Consortium (2005). "Initial sequence of the chimpanzee genome and comparison with the human genome". Nature. 437 (7055): 69–87. Bibcode:2005Natur.437...69.. doi:10.1038/nature04072. PMID 16136131. S2CID 2638825.
Norris, J; Fan, D; Aleman, C; Marks, J. R; Futreal, P. A; Wiseman, R. W; Iglehart, J. D; Deininger, P. L; McDonnell, D. P (1995). "Identification of a new subclass of Alu DNA repeats that can function as estrogen receptor-dependent transcriptional enhancers". The Journal of Biological Chemistry. 270 (39): 22777–82. doi:10.1074/jbc.270.39.22777. PMID 7559405. S2CID 45796017.
Deininger, Prescott L; Batzer, Mark A (1999). "Alu Repeats and Human Disease". Molecular Genetics and Metabolism. 67 (3): 183–93. doi:10.1006/mgme.1999.2864. PMID 10381326. S2CID 15651921.
Batzer, Mark A; Deininger, Prescott L (2002). "Alu Repeats and Human Genomic Diversity". Nature Reviews Genetics. 3 (5): 370–9. doi:10.1038/nrg798. PMID 11988762. S2CID 205486422.
Nyström-Lahti, Minna; Kristo, Paula; Nicolaides, Nicholas C; Chang, Sheng-Yung; Aaltonen, Lauri A; Moisio, Anu-Liisa; Järvinen, Heikki J; Mecklin, Jukka-Pekka; Kinzler, Kenneth W; Vogelstein, Bert; de la Chapelle, Albert; Peltomäki, Päivi (1995). "Founding mutations and Alu-mediated recombination in hereditary colon cancer". Nature Medicine. 1 (11): 1203–6. doi:10.1038/nm1195-1203. PMID 7584997. S2CID 39468812.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.
Puthucheary, Zudin; Skipworth, James RA; Rawal, Jai; Loosemore, Mike; Van Someren, Ken; Montgomery, Hugh E (2011). "The ACE Gene and Human Performance". Sports Medicine. 41 (6): 433–48. doi:10.2165/11588720-000000000-00000. PMID 21615186. S2CID 42531424.
Dulai, K. S; von Dornum, M; Mollon, J. D; Hunt, D. M (1999). "The evolution of trichromatic color vision by opsin gene duplication in New World and Old World primates". Genome Research. 9 (7): 629–38. doi:10.1101/gr.9.7.629. PMID 10413401. S2CID 10637615.

snpedia.com

"SNP in the promoter region of the myeloperoxidase MPO gene". SNPedia. Archived from the original on 2010-05-21. Retrieved 2010-03-14.^{[unreliable medical source?]}

umich.edu

deepblue.lib.umich.edu

Lander, Eric S; Linton, Lauren M; Birren, Bruce; Nusbaum, Chad; Zody, Michael C; Baldwin, Jennifer; Devon, Keri; Dewar, Ken; Doyle, Michael; Fitzhugh, William; Funke, Roel; Gage, Diane; Harris, Katrina; Heaford, Andrew; Howland, John; Kann, Lisa; Lehoczky, Jessica; Levine, Rosie; McEwan, Paul; McKernan, Kevin; Meldrim, James; Mesirov, Jill P; Miranda, Cher; Morris, William; Naylor, Jerome; Raymond, Christina; Rosetti, Mark; Santos, Ralph; Sheridan, Andrew; et al. (2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.

unige.ch

archive-ouverte.unige.ch

Weichenrieder, Oliver; Wild, Klemens; Strub, Katharina; Cusack, Stephen (2000). "Structure and assembly of the Alu domain of the mammalian signal recognition particle". Nature. 408 (6809): 167–73. Bibcode:2000Natur.408..167W. doi:10.1038/35041507. PMID 11089964. S2CID 4427070.

web.archive.org

"SNP in the promoter region of the myeloperoxidase MPO gene". SNPedia. Archived from the original on 2010-05-21. Retrieved 2010-03-14.^{[unreliable medical source?]}

worldcat.org

search.worldcat.org

Arcot, Santosh S.; Wang, Zhenyuan; Weber, James L.; Deininger, Prescott L.; Batzer, Mark A. (September 1995). "Alu Repeats: A Source for the Genesis of Primate Microsatellites". Genomics. 29 (1): 136–144. doi:10.1006/geno.1995.1224. ISSN 0888-7543. PMID 8530063.
Fukuda, Shinichi; Varshney, Akhil; Fowler, Benjamin J.; Wang, Shao-bin; Narendran, Siddharth; Ambati, Kameshwari; Yasuma, Tetsuhiro; Magagnoli, Joseph; Leung, Hannah; Hirahara, Shuichiro; Nagasaka, Yosuke (2021-02-09). "Cytoplasmic synthesis of endogenous Alu complementary DNA via reverse transcription and implications in age-related macular degeneration". Proceedings of the National Academy of Sciences. 118 (6): e2022751118. Bibcode:2021PNAS..11822751F. doi:10.1073/pnas.2022751118. ISSN 0027-8424. PMC 8017980. PMID 33526699. S2CID 231761522.