Biology Monte Carlo method (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Biology Monte Carlo method" in English language version.

refsWebsite

Global rank English rank

9doi.org

2^nd place

9worldcat.org

5^th place

9nih.gov

4^th place

4semanticscholar.org

11^th place

8^th place

2harvard.edu

18^th place

17^th place

1unibas.ch

low place

1psu.edu

207^th place

136^th place

1uiuc.edu

3,087^th place

2,519^th place

doi.org

van der Straaten, T.A.; Kathawala, G.; Trellakis, A.; Eisenberg §, R.S.; Ravaioli, U. (2005-02-15). "BioMOCA—a Boltzmann transport Monte Carlo model for ion channel simulation". Molecular Simulation. 31 (2–3). Informa UK Limited: 151–171. doi:10.1080/08927020412331308700. ISSN 0892-7022. S2CID 96166501.
Toghraee, Reza; Mashl, R. Jay; Lee, Kyu Il; Jakobsson, Eric; Ravaioli, Umberto (2009). "Simulation of charge transport in ion channels and nanopores with anisotropic permittivity". Journal of Computational Electronics. 8 (2). Springer Science and Business Media LLC: 98–109. doi:10.1007/s10825-009-0272-4. ISSN 1569-8025. PMC 2863032. PMID 20445807.
Warshel, Arieh; Russell, Stephen T. (1984). "Calculations of electrostatic interactions in biological systems and in solutions". Quarterly Reviews of Biophysics. 17 (3). Cambridge University Press (CUP): 283–422. doi:10.1017/s0033583500005333. ISSN 0033-5835. PMID 6098916. S2CID 42166505.
Schutz, Claudia N.; Warshel, Arieh (2001). "What are the dielectric "constants" of proteins and how to validate electrostatic models?". Proteins: Structure, Function, and Genetics. 44 (4). Wiley: 400–417. doi:10.1002/prot.1106. ISSN 0887-3585. PMID 11484218. S2CID 9912122.
Warshel, Arieh; Papazyan, Arno (1998). "Electrostatic effects in macromolecules: fundamental concepts and practical modeling". Current Opinion in Structural Biology. 8 (2). Elsevier BV: 211–217. doi:10.1016/s0959-440x(98)80041-9. ISSN 0959-440X. PMID 9631295.
Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.
Baker, N. A.; Sept, D.; Holst, M. J.; McCammon, J. A. (2001). "The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers". IBM Journal of Research and Development. 45 (3.4). IBM: 427–438. CiteSeerX 10.1.1.5.3629. doi:10.1147/rd.453.0427. ISSN 0018-8646.
Im, Wonpil; Roux, Benoı̂t (2002). "Ion Permeation and Selectivity of OmpF Porin: A Theoretical Study Based on Molecular Dynamics, Brownian Dynamics, and Continuum Electrodiffusion Theory". Journal of Molecular Biology. 322 (4). Elsevier BV: 851–869. doi:10.1016/s0022-2836(02)00778-7. ISSN 0022-2836. PMID 12270719.
Wang, Hai-Long; Toghraee, Reza; Papke, David; Cheng, Xiao-Lin; McCammon, J. Andrew; Ravaioli, Umberto; Sine, Steven M. (2009). "Single-Channel Current Through Nicotinic Receptor Produced by Closure of Binding Site C-Loop". Biophysical Journal. 96 (9). Elsevier BV: 3582–3590. Bibcode:2009BpJ....96.3582W. doi:10.1016/j.bpj.2009.02.020. ISSN 0006-3495. PMC 2711404. PMID 19413963.

harvard.edu

ui.adsabs.harvard.edu

Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.
Wang, Hai-Long; Toghraee, Reza; Papke, David; Cheng, Xiao-Lin; McCammon, J. Andrew; Ravaioli, Umberto; Sine, Steven M. (2009). "Single-Channel Current Through Nicotinic Receptor Produced by Closure of Binding Site C-Loop". Biophysical Journal. 96 (9). Elsevier BV: 3582–3590. Bibcode:2009BpJ....96.3582W. doi:10.1016/j.bpj.2009.02.020. ISSN 0006-3495. PMC 2711404. PMID 19413963.

nih.gov

pubmed.ncbi.nlm.nih.gov

Toghraee, Reza; Mashl, R. Jay; Lee, Kyu Il; Jakobsson, Eric; Ravaioli, Umberto (2009). "Simulation of charge transport in ion channels and nanopores with anisotropic permittivity". Journal of Computational Electronics. 8 (2). Springer Science and Business Media LLC: 98–109. doi:10.1007/s10825-009-0272-4. ISSN 1569-8025. PMC 2863032. PMID 20445807.
Warshel, Arieh; Russell, Stephen T. (1984). "Calculations of electrostatic interactions in biological systems and in solutions". Quarterly Reviews of Biophysics. 17 (3). Cambridge University Press (CUP): 283–422. doi:10.1017/s0033583500005333. ISSN 0033-5835. PMID 6098916. S2CID 42166505.
Schutz, Claudia N.; Warshel, Arieh (2001). "What are the dielectric "constants" of proteins and how to validate electrostatic models?". Proteins: Structure, Function, and Genetics. 44 (4). Wiley: 400–417. doi:10.1002/prot.1106. ISSN 0887-3585. PMID 11484218. S2CID 9912122.
Warshel, Arieh; Papazyan, Arno (1998). "Electrostatic effects in macromolecules: fundamental concepts and practical modeling". Current Opinion in Structural Biology. 8 (2). Elsevier BV: 211–217. doi:10.1016/s0959-440x(98)80041-9. ISSN 0959-440X. PMID 9631295.
Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.
Im, Wonpil; Roux, Benoı̂t (2002). "Ion Permeation and Selectivity of OmpF Porin: A Theoretical Study Based on Molecular Dynamics, Brownian Dynamics, and Continuum Electrodiffusion Theory". Journal of Molecular Biology. 322 (4). Elsevier BV: 851–869. doi:10.1016/s0022-2836(02)00778-7. ISSN 0022-2836. PMID 12270719.
Wang, Hai-Long; Toghraee, Reza; Papke, David; Cheng, Xiao-Lin; McCammon, J. Andrew; Ravaioli, Umberto; Sine, Steven M. (2009). "Single-Channel Current Through Nicotinic Receptor Produced by Closure of Binding Site C-Loop". Biophysical Journal. 96 (9). Elsevier BV: 3582–3590. Bibcode:2009BpJ....96.3582W. doi:10.1016/j.bpj.2009.02.020. ISSN 0006-3495. PMC 2711404. PMID 19413963.

ncbi.nlm.nih.gov

Toghraee, Reza; Mashl, R. Jay; Lee, Kyu Il; Jakobsson, Eric; Ravaioli, Umberto (2009). "Simulation of charge transport in ion channels and nanopores with anisotropic permittivity". Journal of Computational Electronics. 8 (2). Springer Science and Business Media LLC: 98–109. doi:10.1007/s10825-009-0272-4. ISSN 1569-8025. PMC 2863032. PMID 20445807.
Wang, Hai-Long; Toghraee, Reza; Papke, David; Cheng, Xiao-Lin; McCammon, J. Andrew; Ravaioli, Umberto; Sine, Steven M. (2009). "Single-Channel Current Through Nicotinic Receptor Produced by Closure of Binding Site C-Loop". Biophysical Journal. 96 (9). Elsevier BV: 3582–3590. Bibcode:2009BpJ....96.3582W. doi:10.1016/j.bpj.2009.02.020. ISSN 0006-3495. PMC 2711404. PMID 19413963.

psu.edu

citeseerx.ist.psu.edu

Baker, N. A.; Sept, D.; Holst, M. J.; McCammon, J. A. (2001). "The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers". IBM Journal of Research and Development. 45 (3.4). IBM: 427–438. CiteSeerX 10.1.1.5.3629. doi:10.1147/rd.453.0427. ISSN 0018-8646.

semanticscholar.org

api.semanticscholar.org

van der Straaten, T.A.; Kathawala, G.; Trellakis, A.; Eisenberg §, R.S.; Ravaioli, U. (2005-02-15). "BioMOCA—a Boltzmann transport Monte Carlo model for ion channel simulation". Molecular Simulation. 31 (2–3). Informa UK Limited: 151–171. doi:10.1080/08927020412331308700. ISSN 0892-7022. S2CID 96166501.
Warshel, Arieh; Russell, Stephen T. (1984). "Calculations of electrostatic interactions in biological systems and in solutions". Quarterly Reviews of Biophysics. 17 (3). Cambridge University Press (CUP): 283–422. doi:10.1017/s0033583500005333. ISSN 0033-5835. PMID 6098916. S2CID 42166505.
Schutz, Claudia N.; Warshel, Arieh (2001). "What are the dielectric "constants" of proteins and how to validate electrostatic models?". Proteins: Structure, Function, and Genetics. 44 (4). Wiley: 400–417. doi:10.1002/prot.1106. ISSN 0887-3585. PMID 11484218. S2CID 9912122.
Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.

uiuc.edu

ks.uiuc.edu

"VMD - Visual Molecular Dynamics". www.ks.uiuc.edu.

unibas.ch

edoc.unibas.ch

Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.

worldcat.org

search.worldcat.org

van der Straaten, T.A.; Kathawala, G.; Trellakis, A.; Eisenberg §, R.S.; Ravaioli, U. (2005-02-15). "BioMOCA—a Boltzmann transport Monte Carlo model for ion channel simulation". Molecular Simulation. 31 (2–3). Informa UK Limited: 151–171. doi:10.1080/08927020412331308700. ISSN 0892-7022. S2CID 96166501.
Toghraee, Reza; Mashl, R. Jay; Lee, Kyu Il; Jakobsson, Eric; Ravaioli, Umberto (2009). "Simulation of charge transport in ion channels and nanopores with anisotropic permittivity". Journal of Computational Electronics. 8 (2). Springer Science and Business Media LLC: 98–109. doi:10.1007/s10825-009-0272-4. ISSN 1569-8025. PMC 2863032. PMID 20445807.
Warshel, Arieh; Russell, Stephen T. (1984). "Calculations of electrostatic interactions in biological systems and in solutions". Quarterly Reviews of Biophysics. 17 (3). Cambridge University Press (CUP): 283–422. doi:10.1017/s0033583500005333. ISSN 0033-5835. PMID 6098916. S2CID 42166505.
Schutz, Claudia N.; Warshel, Arieh (2001). "What are the dielectric "constants" of proteins and how to validate electrostatic models?". Proteins: Structure, Function, and Genetics. 44 (4). Wiley: 400–417. doi:10.1002/prot.1106. ISSN 0887-3585. PMID 11484218. S2CID 9912122.
Warshel, Arieh; Papazyan, Arno (1998). "Electrostatic effects in macromolecules: fundamental concepts and practical modeling". Current Opinion in Structural Biology. 8 (2). Elsevier BV: 211–217. doi:10.1016/s0959-440x(98)80041-9. ISSN 0959-440X. PMID 9631295.
Roux, Benoît; Allen, Toby; Bernèche, Simon; Im, Wonpil (2004). "Theoretical and computational models of biological ion channels" (PDF). Quarterly Reviews of Biophysics. 37 (1). Cambridge University Press (CUP): 15–103. Bibcode:2004APS..MAR.J7004R. doi:10.1017/s0033583504003968. ISSN 0033-5835. PMID 17390604. S2CID 6213437.
Baker, N. A.; Sept, D.; Holst, M. J.; McCammon, J. A. (2001). "The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers". IBM Journal of Research and Development. 45 (3.4). IBM: 427–438. CiteSeerX 10.1.1.5.3629. doi:10.1147/rd.453.0427. ISSN 0018-8646.
Im, Wonpil; Roux, Benoı̂t (2002). "Ion Permeation and Selectivity of OmpF Porin: A Theoretical Study Based on Molecular Dynamics, Brownian Dynamics, and Continuum Electrodiffusion Theory". Journal of Molecular Biology. 322 (4). Elsevier BV: 851–869. doi:10.1016/s0022-2836(02)00778-7. ISSN 0022-2836. PMID 12270719.
Wang, Hai-Long; Toghraee, Reza; Papke, David; Cheng, Xiao-Lin; McCammon, J. Andrew; Ravaioli, Umberto; Sine, Steven M. (2009). "Single-Channel Current Through Nicotinic Receptor Produced by Closure of Binding Site C-Loop". Biophysical Journal. 96 (9). Elsevier BV: 3582–3590. Bibcode:2009BpJ....96.3582W. doi:10.1016/j.bpj.2009.02.020. ISSN 0006-3495. PMC 2711404. PMID 19413963.