DNA sequencing (English Wikipedia)

Kawashima, Eric H.; Laurent Farinelli; Pascal Mayer (12 May 2005). "Patent: Method of nucleic acid amplification". Archived from the original on 22 February 2013. Retrieved 22 December 2012.

bio-itworld.com

"Bio-IT World". bio-itworld.com. Archived from the original on 29 July 2020. Retrieved 16 November 2015.

bioethics.gov

"Privacy and Progress in Whole Genome Sequencing" (PDF). Presidential Commission for the Study of Bioethical Issues. Archived from the original (PDF) on 12 June 2015. Retrieved 20 May 2015.

bostonglobe.com

Johnson, Carolyn Y. (12 March 2015). "A physicist, biologist, Nobel laureate, CEO, and now, artist". The Boston Globe. Retrieved 3 February 2025.
Hartnett, Kevin (12 May 2013). "The DNA in your garbage: up for grabs". The Boston Globe. Retrieved 2 January 2023.

cnn.com

Hunt, Katie (17 February 2021). "World's oldest DNA sequenced from a mammoth that lived more than a million years ago". CNN. Retrieved 17 February 2021.

completegenomics.com

brandonvd. "About Us – Complete Genomics". Complete Genomics. Retrieved 2 July 2018.

cornell.edu

mbg.cornell.edu

"Ray Wu Faculty Profile". Cornell University. Archived from the original on 4 March 2009.

doi.org

"Next-generation" remains in broad use as of 2019. For instance, Straiton J, Free T, Sawyer A, Martin J (February 2019). "From Sanger Sequencing to Genome Databases and Beyond". BioTechniques. 66 (2): 60–63. doi:10.2144/btn-2019-0011. PMID 30744413. Next-generation sequencing (NGS) technologies have revolutionized genomic research. (opening sentence of the article)
Behjati S, Tarpey PS (December 2013). "What is next generation sequencing?". Archives of Disease in Childhood: Education and Practice Edition. 98 (6): 236–8. doi:10.1136/archdischild-2013-304340. PMC 3841808. PMID 23986538.
Chmielecki J, Meyerson M (14 January 2014). "DNA sequencing of cancer: what have we learned?". Annual Review of Medicine. 65 (1): 63–79. doi:10.1146/annurev-med-060712-200152. PMID 24274178.
Abate AR, Hung T, Sperling RA, Mary P, Rotem A, Agresti JJ, et al. (December 2013). "DNA sequence analysis with droplet-based microfluidics". Lab on a Chip. 13 (24): 4864–9. doi:10.1039/c3lc50905b. PMC 4090915. PMID 24185402.
Pekin D, Skhiri Y, Baret JC, Le Corre D, Mazutis L, Salem CB, et al. (July 2011). "Quantitative and sensitive detection of rare mutations using droplet-based microfluidics". Lab on a Chip. 11 (13): 2156–66. doi:10.1039/c1lc20128j. PMID 21594292.
Olsvik O, Wahlberg J, Petterson B, Uhlén M, Popovic T, Wachsmuth IK, Fields PI (January 1993). "Use of automated sequencing of polymerase chain reaction-generated amplicons to identify three types of cholera toxin subunit B in Vibrio cholerae O1 strains". J. Clin. Microbiol. 31 (1): 22–25. doi:10.1128/JCM.31.1.22-25.1993. PMC 262614. PMID 7678018.
Pettersson E, Lundeberg J, Ahmadian A (February 2009). "Generations of sequencing technologies". Genomics. 93 (2): 105–11. doi:10.1016/j.ygeno.2008.10.003. PMID 18992322.
Jay E, Bambara R, Padmanabhan R, Wu R (March 1974). "DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping". Nucleic Acids Research. 1 (3): 331–53. doi:10.1093/nar/1.3.331. PMC 344020. PMID 10793670.
Callaway, Ewen (17 February 2021). "Million-year-old mammoth genomes shatter record for oldest ancient DNA – Permafrost-preserved teeth, up to 1.6 million years old, identify a new kind of mammoth in Siberia". Nature. 590 (7847): 537–538. Bibcode:2021Natur.590..537C. doi:10.1038/d41586-021-00436-x. PMID 33597786.
Castro, Christina; Marine, Rachel; Ramos, Edward; Ng, Terry Fei Fan (2019). "The effect of variant interference on de novo assembly for viral deep sequencing". BMC Genomics. 21 (1): 421. bioRxiv 10.1101/815480. doi:10.1186/s12864-020-06801-w. PMC 7306937. PMID 32571214.
Wohl, Shirlee; Schaffner, Stephen F.; Sabeti, Pardis C. (2016). "Genomic Analysis of Viral Outbreaks". Annual Review of Virology. 3 (1): 173–195. doi:10.1146/annurev-virology-110615-035747. PMC 5210220. PMID 27501264.
Boycott, Kym M.; Vanstone, Megan R.; Bulman, Dennis E.; MacKenzie, Alex E. (October 2013). "Rare-disease genetics in the era of next-generation sequencing: discovery to translation". Nature Reviews Genetics. 14 (10): 681–691. doi:10.1038/nrg3555. PMID 23999272. S2CID 8496181.
Bean, Lora; Funke, Birgit; Carlston, Colleen M.; Gannon, Jennifer L.; Kantarci, Sibel; Krock, Bryan L.; Zhang, Shulin; Bayrak-Toydemir, Pinar (March 2020). "Diagnostic gene sequencing panels: from design to report—a technical standard of the American College of Medical Genetics and Genomics (ACMG)". Genetics in Medicine. 22 (3): 453–461. doi:10.1038/s41436-019-0666-z. ISSN 1098-3600. PMID 31732716.
Schleusener V, Köser CU, Beckert P, Niemann S, Feuerriegel S (2017). "Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools". Sci Rep. 7: 46327. Bibcode:2017NatSR...746327S. doi:10.1038/srep46327. PMC 7365310. PMID 28425484.
Mahé P, El Azami M, Barlas P, Tournoud M (2019). "A large scale evaluation of TBProfiler and Mykrobe for antibiotic resistance prediction in Mycobacterium tuberculosis". PeerJ. 7: e6857. doi:10.7717/peerj.6857. PMC 6500375. PMID 31106066.
Bradley, Phelim; Gordon, N. Claire; Walker, Timothy M.; Dunn, Laura; Heys, Simon; Huang, Bill; Earle, Sarah; Pankhurst, Louise J.; Anson, Luke; de Cesare, Mariateresa; Piazza, Paolo; Votintseva, Antonina A.; Golubchik, Tanya; Wilson, Daniel J.; Wyllie, David H.; Diel, Roland; Niemann, Stefan; Feuerriegel, Silke; Kohl, Thomas A.; Ismail, Nazir; Omar, Shaheed V.; Smith, E. Grace; Buck, David; McVean, Gil; Walker, A. Sarah; Peto, Tim E. A.; Crook, Derrick W.; Iqbal, Zamin (21 December 2015). "Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis". Nature Communications. 6 (1): 10063. Bibcode:2015NatCo...610063B. doi:10.1038/ncomms10063. PMC 4703848. PMID 26686880.
Moréra S, Larivière L, Kurzeck J, Aschke-Sonnenborn U, Freemont PS, Janin J, Rüger W (August 2001). "High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding". Journal of Molecular Biology. 311 (3): 569–77. doi:10.1006/jmbi.2001.4905. PMID 11493010.
Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA, Gehrke C (April 1982). "Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells". Nucleic Acids Research. 10 (8): 2709–21. doi:10.1093/nar/10.8.2709. PMC 320645. PMID 7079182.
Ehrlich M, Wang RY (June 1981). "5-Methylcytosine in eukaryotic DNA". Science. 212 (4501): 1350–7. Bibcode:1981Sci...212.1350E. doi:10.1126/science.6262918. PMID 6262918.
Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, et al. (November 2011). "Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine". Nature Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Czernecki, Dariusz; Bonhomme, Frédéric; Kaminski, Pierre-Alexandre; Delarue, Marc (5 August 2021). "Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA". Nature Communications. 12 (1): 4710. Bibcode:2021NatCo..12.4710C. doi:10.1038/s41467-021-25064-x. PMC 8342488. PMID 34354070. S2CID 233745192.
Watson JD, Crick FH (1953). "The structure of DNA". Cold Spring Harb. Symp. Quant. Biol. 18: 123–31. doi:10.1101/SQB.1953.018.01.020. PMID 13168976.
Min Jou W, Haegeman G, Ysebaert M, Fiers W (May 1972). "Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein". Nature. 237 (5350): 82–8. Bibcode:1972Natur.237...82J. doi:10.1038/237082a0. PMID 4555447. S2CID 4153893.
Fiers W, Contreras R, Duerinck F, Haegeman G, Iserentant D, Merregaert J, Min Jou W, Molemans F, Raeymaekers A, Van den Berghe A, Volckaert G, Ysebaert M (April 1976). "Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene". Nature. 260 (5551): 500–7. Bibcode:1976Natur.260..500F. doi:10.1038/260500a0. PMID 1264203. S2CID 4289674.
Ozsolak F, Milos PM (February 2011). "RNA sequencing: advances, challenges and opportunities". Nature Reviews Genetics. 12 (2): 87–98. doi:10.1038/nrg2934. PMC 3031867. PMID 21191423.
Padmanabhan R, Jay E, Wu R (June 1974). "Chemical synthesis of a primer and its use in the sequence analysis of the lysozyme gene of bacteriophage T4". Proceedings of the National Academy of Sciences of the United States of America. 71 (6): 2510–4. Bibcode:1974PNAS...71.2510P. doi:10.1073/pnas.71.6.2510. PMC 388489. PMID 4526223.
Onaga LA (June 2014). "Ray Wu as Fifth Business: Demonstrating Collective Memory in the History of DNA Sequencing". Studies in the History and Philosophy of Science. Part C. 46: 1–14. doi:10.1016/j.shpsc.2013.12.006. PMID 24565976.
Wu R (1972). "Nucleotide sequence analysis of DNA". Nature New Biology. 236 (68): 198–200. doi:10.1038/newbio236198a0. PMID 4553110.
Padmanabhan R, Wu R (1972). "Nucleotide sequence analysis of DNA. IX. Use of oligonucleotides of defined sequence as primers in DNA sequence analysis". Biochem. Biophys. Res. Commun. 48 (5): 1295–302. doi:10.1016/0006-291X(72)90852-2. PMID 4560009.
Wu R, Tu CD, Padmanabhan R (1973). "Nucleotide sequence analysis of DNA. XII. The chemical synthesis and sequence analysis of a dodecadeoxynucleotide which binds to the endolysin gene of bacteriophage lambda". Biochem. Biophys. Res. Commun. 55 (4): 1092–99. doi:10.1016/S0006-291X(73)80007-5. PMID 4358929.
Maxam AM, Gilbert W (February 1977). "A new method for sequencing DNA". Proc. Natl. Acad. Sci. USA. 74 (2): 560–64. Bibcode:1977PNAS...74..560M. doi:10.1073/pnas.74.2.560. PMC 392330. PMID 265521.
Gilbert W, Maxam A (December 1973). "The Nucleotide Sequence of the lac Operator". Proc. Natl. Acad. Sci. U.S.A. 70 (12): 3581–84. Bibcode:1973PNAS...70.3581G. doi:10.1073/pnas.70.12.3581. PMC 427284. PMID 4587255.
Sanger, F.; Coulson, A. R. (25 May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". Journal of Molecular Biology. 94 (3): 441–448. doi:10.1016/0022-2836(75)90213-2. ISSN 0022-2836. PMID 1100841.
Deharvengt, Sophie J.; Petersen, Lauren M.; Jung, Hou-Sung; Tsongalis, Gregory J. (2020). "Nucleic acid analysis in the clinical laboratory". Contemporary Practice in Clinical Chemistry. pp. 215–234. doi:10.1016/B978-0-12-815499-1.00013-2. ISBN 978-0-12-815499-1.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Elsayed, Fadwa A.; Grolleman, Judith E.; Ragunathan, Abiramy; Buchanan, Daniel D.; van Wezel, Tom; de Voer, Richarda M.; Boot, Arnoud; Stojovska, Marija Staninova; Mahmood, Khalid; Clendenning, Mark; de Miranda, Noel; Dymerska, Dagmara; Egmond, Demi van; Gallinger, Steven; Georgeson, Peter; Hoogerbrugge, Nicoline; Hopper, John L.; Jansen, Erik A.M.; Jenkins, Mark A.; Joo, Jihoon E.; Kuiper, Roland P.; Ligtenberg, Marjolijn J.L.; Lubinski, Jan; Macrae, Finlay A.; Morreau, Hans; Newcomb, Polly; Nielsen, Maartje; Palles, Claire; Park, Daniel J.; Pope, Bernard J.; Rosty, Christophe; Ruiz Ponte, Clara; Schackert, Hans K.; Sijmons, Rolf H.; Tomlinson, Ian P.; Tops, Carli M.J.; Vreede, Lilian; Walker, Romy; Win, Aung K. (December 2020). "Monoallelic NTHL1 Loss-of-Function Variants and Risk of Polyposis and Colorectal Cancer". Gastroenterology. 159 (6): 2241–2243.e6. doi:10.1053/j.gastro.2020.08.042. hdl:2066/228713. PMC 7899696. PMID 32860789.
Sanger F, Nicklen S, Coulson AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc. Natl. Acad. Sci. USA. 74 (12): 5463–77. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Beck S, Pohl FM (1984). "DNA sequencing with direct blotting electrophoresis". EMBO J. 3 (12): 2905–09. doi:10.1002/j.1460-2075.1984.tb02230.x. PMC 557787. PMID 6396083.
Feldmann H, et al. (1994). "Complete DNA sequence of yeast chromosome II". EMBO J. 13 (24): 5795–809. doi:10.1002/j.1460-2075.1994.tb06923.x. PMC 395553. PMID 7813418.
Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE (12 June 1986). "Fluorescence Detection in Automated DNA Sequence Analysis". Nature. 321 (6071): 674–79. Bibcode:1986Natur.321..674S. doi:10.1038/321674a0. PMID 3713851. S2CID 27800972.
Prober JM, Trainor GL, Dam RJ, Hobbs FW, Robertson CW, Zagursky RJ, Cocuzza AJ, Jensen MA, Baumeister K (16 October 1987). "A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides". Science. 238 (4825): 336–41. Bibcode:1987Sci...238..336P. doi:10.1126/science.2443975. PMID 2443975.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF (June 1991). "Complementary DNA sequencing: expressed sequence tags and human genome project". Science. 252 (5013): 1651–56. Bibcode:1991Sci...252.1651A. doi:10.1126/science.2047873. PMID 2047873. S2CID 13436211.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM (July 1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (February 2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Venter JC, Adams MD, et al. (February 2001). "The sequence of the human genome". Science. 291 (5507): 1304–51. Bibcode:2001Sci...291.1304V. doi:10.1126/science.1058040. PMID 11181995.
Yang, Aimin; Zhang, Wei; Wang, Jiahao; Yang, Ke; Han, Yang; Zhang, Limin (2020). "Review on the Application of Machine Learning Algorithms in the Sequence Data Mining of DNA". Frontiers in Bioengineering and Biotechnology. 8: 1032. doi:10.3389/fbioe.2020.01032. PMC 7498545. PMID 33015010.
Ronaghi M, Karamohamed S, Pettersson B, Uhlén M, Nyrén P (1996). "Real-time DNA sequencing using detection of pyrophosphate release". Analytical Biochemistry. 242 (1): 84–89. doi:10.1006/abio.1996.0432. PMID 8923969.
Ewing B, Green P (March 1998). "Base-calling of automated sequencer traces using phred. II. Error probabilities". Genome Res. 8 (3): 186–94. doi:10.1101/gr.8.3.186. PMID 9521922.
Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J, Corcoran K (2000). "Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays". Nature Biotechnology. 18 (6): 630–34. doi:10.1038/76469. PMID 10835600. S2CID 13884154.
Sanger F, Coulson AR (May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". J. Mol. Biol. 94 (3): 441–48. doi:10.1016/0022-2836(75)90213-2. PMID 1100841.
Nyren, P.; Pettersson, B.; Uhlen, M. (January 1993). "Solid Phase DNA Minisequencing by an Enzymatic Luminometric Inorganic Pyrophosphate Detection Assay". Analytical Biochemistry. 208 (1): 171–175. doi:10.1006/abio.1993.1024. PMID 8382019.
Ronaghi, Mostafa; Uhlén, Mathias; Nyrén, Pål (17 July 1998). "A Sequencing Method Based on Real-Time Pyrophosphate". Science. 281 (5375): 363–365. doi:10.1126/science.281.5375.363. PMID 9705713. S2CID 26331871.
Quail MA, Gu Y, Swerdlow H, Mayho M (2012). "Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation". Electrophoresis. 33 (23): 3521–28. doi:10.1002/elps.201200128. PMID 23147856. S2CID 39818212.
Duhaime MB, Deng L, Poulos BT, Sullivan MB (2012). "Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method". Environ. Microbiol. 14 (9): 2526–37. Bibcode:2012EnvMi..14.2526D. doi:10.1111/j.1462-2920.2012.02791.x. PMC 3466414. PMID 22713159.
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012). "Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species". PLOS ONE. 7 (5): e37135. Bibcode:2012PLoSO...737135P. doi:10.1371/journal.pone.0037135. PMC 3365034. PMID 22675423.
Williams R, Peisajovich SG, Miller OJ, Magdassi S, Tawfik DS, Griffiths AD (2006). "Amplification of complex gene libraries by emulsion PCR". Nature Methods. 3 (7): 545–50. doi:10.1038/nmeth896. PMID 16791213. S2CID 27459628.
Margulies M, Egholm M, et al. (September 2005). "Genome Sequencing in Open Microfabricated High Density Picoliter Reactors". Nature. 437 (7057): 376–80. Bibcode:2005Natur.437..376M. doi:10.1038/nature03959. PMC 1464427. PMID 16056220.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Goodwin S, McPherson JD, McCombie WR (May 2016). "Coming of age: ten years of next-generation sequencing technologies". Nature Reviews Genetics. 17 (6): 333–51. doi:10.1038/nrg.2016.49. PMC 10373632. PMID 27184599. S2CID 8295541.
Staden R (11 June 1979). "A strategy of DNA sequencing employing computer programs". Nucleic Acids Research. 6 (7): 2601–10. doi:10.1093/nar/6.7.2601. PMC 327874. PMID 461197.
de Magalhães JP, Finch CE, Janssens G (2010). "Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions". Ageing Research Reviews. 9 (3): 315–23. doi:10.1016/j.arr.2009.10.006. PMC 2878865. PMID 19900591.
Grada A (August 2013). "Next-generation sequencing: methodology and application". J Invest Dermatol. 133 (8): e11. doi:10.1038/jid.2013.248. PMID 23856935.
Hall N (May 2007). "Advanced sequencing technologies and their wider impact in microbiology". J. Exp. Biol. 210 (Pt 9): 1518–25. Bibcode:2007JExpB.210.1518H. doi:10.1242/jeb.001370. PMID 17449817.
Church GM (January 2006). "Genomes for all". Sci. Am. 294 (1): 46–54. Bibcode:2006SciAm.294a..46C. doi:10.1038/scientificamerican0106-46. PMID 16468433. S2CID 28769137.(subscription required)
Schuster SC (January 2008). "Next-generation sequencing transforms today's biology". Nat. Methods. 5 (1): 16–18. doi:10.1038/nmeth1156. PMID 18165802. S2CID 1465786.
ten Bosch JR, Grody WW (2008). "Keeping Up with the Next Generation". The Journal of Molecular Diagnostics. 10 (6): 484–92. doi:10.2353/jmoldx.2008.080027. PMC 2570630. PMID 18832462.
Tucker T, Marra M, Friedman JM (2009). "Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine". The American Journal of Human Genetics. 85 (2): 142–54. doi:10.1016/j.ajhg.2009.06.022. PMC 2725244. PMID 19679224.
Straiton J, Free T, Sawyer A, Martin J (February 2019). "From Sanger sequencing to genome databases and beyond". BioTechniques. 66 (2). Future Science: 60–63. doi:10.2144/btn-2019-0011. PMID 30744413.
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (1 January 2012). "A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and illumina MiSeq sequencers". BMC Genomics. 13 (1): 341. doi:10.1186/1471-2164-13-341. PMC 3431227. PMID 22827831.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (1 January 2012). "Comparison of Next-Generation Sequencing Systems". Journal of Biomedicine and Biotechnology. 2012: 251364. doi:10.1155/2012/251364. PMC 3398667. PMID 22829749.
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J (2013). "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data". Nat. Methods. 10 (6): 563–69. doi:10.1038/nmeth.2474. PMID 23644548. S2CID 205421576.
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK (25 August 2011). "Origins of the Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N Engl J Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Tran B, Brown AM, Bedard PL, Winquist E, Goss GD, Hotte SJ, Welch SA, Hirte HW, Zhang T, Stein LD, Ferretti V, Watt S, Jiao W, Ng K, Ghai S, Shaw P, Petrocelli T, Hudson TJ, Neel BG, Onetto N, Siu LL, McPherson JD, Kamel-Reid S, Dancey JE (1 January 2012). "Feasibility of real time next generation sequencing of cancer genes linked to drug response: Results from a clinical trial". Int. J. Cancer. 132 (7): 1547–55. doi:10.1002/ijc.27817. PMID 22948899. S2CID 72705.(subscription required)
Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, Fomenkov A, Turner SW, Korlach J, Roberts RJ (2 October 2012). "The methylomes of six bacteria". Nucleic Acids Research. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
van Vliet AH (1 January 2010). "Next generation sequencing of microbial transcriptomes: challenges and opportunities". FEMS Microbiology Letters. 302 (1): 1–7. doi:10.1111/j.1574-6968.2009.01767.x. PMID 19735299.
Huang YF, Chen SC, Chiang YS, Chen TH, Chiu KP (2012). "Palindromic sequence impedes sequencing-by-ligation mechanism". BMC Systems Biology. 6 (Suppl 2): S10. doi:10.1186/1752-0509-6-S2-S10. PMC 3521181. PMID 23281822.
Loose, Matthew; Rakyan, Vardhman; Holmes, Nadine; Payne, Alexander (3 May 2018). "Whale watching with BulkVis: A graphical viewer for Oxford Nanopore bulk fast5 files". bioRxiv 10.1101/312256.
Clarke J, Wu HC, Jayasinghe L, Patel A, Reid S, Bayley H (April 2009). "Continuous base identification for single-molecule nanopore DNA sequencing". Nature Nanotechnology. 4 (4): 265–70. Bibcode:2009NatNa...4..265C. doi:10.1038/nnano.2009.12. PMID 19350039.
dela Torre R, Larkin J, Singer A, Meller A (2012). "Fabrication and characterization of solid-state nanopore arrays for high-throughput DNA sequencing". Nanotechnology. 23 (38): 385308. Bibcode:2012Nanot..23L5308D. doi:10.1088/0957-4484/23/38/385308. PMC 3557807. PMID 22948520.
Pathak B, Lofas H, Prasongkit J, Grigoriev A, Ahuja R, Scheicher RH (2012). "Double-functionalized nanopore-embedded gold electrodes for rapid DNA sequencing". Applied Physics Letters. 100 (2): 023701. Bibcode:2012ApPhL.100b3701P. doi:10.1063/1.3673335.
Korlach J, Marks PJ, Cicero RL, Gray JJ, Murphy DL, Roitman DB, Pham TT, Otto GA, Foquet M, Turner SW (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". Proceedings of the National Academy of Sciences. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (9 September 2005). "Accurate multiplex polony sequencing of an evolved bacterial genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Bentley DR, Balasubramanian S, et al. (2008). "Accurate whole human genome sequencing using reversible terminator chemistry". Nature. 456 (7218): 53–59. Bibcode:2008Natur.456...53B. doi:10.1038/nature07517. PMC 2581791. PMID 18987734.
Canard B, Sarfati RS (October 1994). "DNA polymerase fluorescent substrates with reversible 3'-tags". Gene. 148 (1): 1–6. doi:10.1016/0378-1119(94)90226-7. PMID 7523248.
Mardis ER (2008). "Next-generation DNA sequencing methods". Annu Rev Genom Hum Genet. 9: 387–402. doi:10.1146/annurev.genom.9.081307.164359. PMID 18576944.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, et al. (January 2010). "Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, et al. (May 2017). "A reference human genome dataset of the BGISEQ-500 sequencer". GigaScience. 6 (5): 1–9. doi:10.1093/gigascience/gix024. PMC 5467036. PMID 28379488.
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM (July 2008). "A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning". Genome Res. 18 (7): 1051–63. doi:10.1101/gr.076463.108. PMC 2493394. PMID 18477713.
Rusk N (2011). "Torrents of sequence". Nat Methods. 8 (1): 44. doi:10.1038/nmeth.f.330. S2CID 41040192.
Drmanac R, Sparks AB, et al. (2010). "Human Genome Sequencing Using Unchained Base Reads in Self-Assembling DNA Nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Porreca GJ (2010). "Genome Sequencing on Nanoballs". Nature Biotechnology. 28 (1): 43–44. doi:10.1038/nbt0110-43. PMID 20062041. S2CID 54557996.
Thompson JF, Steinmann KE (October 2010). "Single molecule sequencing with a HeliScope genetic analysis system". Current Protocols in Molecular Biology. Chapter 7: Unit7.10. doi:10.1002/0471142727.mb0710s92. PMC 2954431. PMID 20890904.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Sara El-Metwally; Osama M. Ouda; Mohamed Helmy (2014). "New Horizons in Next-Generation Sequencing". Next Generation Sequencing Technologies and Challenges in Sequence Assembly. SpringerBriefs in Systems Biology. Vol. 7. Next Generation Sequencing Technologies and Challenges in Sequence Assembly, Springer Briefs in Systems Biology Volume 7. pp. 51–59. doi:10.1007/978-1-4939-0715-1_6. ISBN 978-1-4939-0714-4.
Fair RB, Khlystov A, Tailor TD, Ivanov V, Evans RD, Srinivasan V, Pamula VK, Pollack MG, Griffin PB, Zhou J (January 2007). "Chemical and Biological Applications of Digital-Microfluidic Devices". IEEE Design & Test of Computers. 24 (1): 10–24. CiteSeerX 10.1.1.559.1440. doi:10.1109/MDT.2007.8. hdl:10161/6987. S2CID 10122940.
Boles DJ, Benton JL, Siew GJ, Levy MH, Thwar PK, Sandahl MA, et al. (November 2011). "Droplet-based pyrosequencing using digital microfluidics". Analytical Chemistry. 83 (22): 8439–47. doi:10.1021/ac201416j. PMC 3690483. PMID 21932784.
Zilionis R, Nainys J, Veres A, Savova V, Zemmour D, Klein AM, Mazutis L (January 2017). "Single-cell barcoding and sequencing using droplet microfluidics". Nature Protocols. 12 (1): 44–73. doi:10.1038/nprot.2016.154. PMID 27929523. S2CID 767782.
Xu M, Fujita D, Hanagata N (December 2009). "Perspectives and challenges of emerging single-molecule DNA sequencing technologies". Small. 5 (23): 2638–49. doi:10.1002/smll.200900976. PMID 19904762.
Schadt EE, Turner S, Kasarskis A (2010). "A window into third-generation sequencing". Human Molecular Genetics. 19 (R2): R227–40. doi:10.1093/hmg/ddq416. PMID 20858600.
Xu M, Endres RG, Arakawa Y (2007). "The electronic properties of DNA bases". Small. 3 (9): 1539–43. doi:10.1002/smll.200600732. PMID 17786897.
Di Ventra M (2013). "Fast DNA sequencing by electrical means inches closer". Nanotechnology. 24 (34): 342501. Bibcode:2013Nanot..24H2501D. doi:10.1088/0957-4484/24/34/342501. PMID 23899780. S2CID 140101884.
Ohshiro T, Matsubara K, Tsutsui M, Furuhashi M, Taniguchi M, Kawai T (2012). "Single-molecule electrical random resequencing of DNA and RNA". Sci Rep. 2: 501. Bibcode:2012NatSR...2..501O. doi:10.1038/srep00501. PMC 3392642. PMID 22787559.
Hanna GJ, Johnson VA, Kuritzkes DR, Richman DD, Martinez-Picado J, Sutton L, Hazelwood JD, D'Aquila RT (1 July 2000). "Comparison of Sequencing by Hybridization and Cycle Sequencing for Genotyping of Human Immunodeficiency Virus Type 1 Reverse Transcriptase". J. Clin. Microbiol. 38 (7): 2715–21. doi:10.1128/JCM.38.7.2715-2721.2000. PMC 87006. PMID 10878069.
Morey M, Fernández-Marmiesse A, Castiñeiras D, Fraga JM, Couce ML, Cocho JA (2013). "A glimpse into past, present, and future DNA sequencing". Molecular Genetics and Metabolism. 110 (1–2): 3–24. doi:10.1016/j.ymgme.2013.04.024. hdl:20.500.11940/2036. PMID 23742747.
Qin Y, Schneider TM, Brenner MP (2012). Gibas C (ed.). "Sequencing by Hybridization of Long Targets". PLOS ONE. 7 (5): e35819. Bibcode:2012PLoSO...735819Q. doi:10.1371/journal.pone.0035819. PMC 3344849. PMID 22574124.
Edwards JR, Ruparel H, Ju J (2005). "Mass-spectrometry DNA sequencing". Mutation Research. 573 (1–2): 3–12. Bibcode:2005MRFMM.573....3E. doi:10.1016/j.mrfmmm.2004.07.021. PMID 15829234.
Hall TA, Budowle B, Jiang Y, Blyn L, Eshoo M, Sannes-Lowery KA, Sampath R, Drader JJ, Hannis JC, Harrell P, Samant V, White N, Ecker DJ, Hofstadler SA (2005). "Base composition analysis of human mitochondrial DNA using electrospray ionization mass spectrometry: A novel tool for the identification and differentiation of humans". Analytical Biochemistry. 344 (1): 53–69. doi:10.1016/j.ab.2005.05.028. PMID 16054106.
Howard R, Encheva V, Thomson J, Bache K, Chan YT, Cowen S, Debenham P, Dixon A, Krause JU, Krishan E, Moore D, Moore V, Ojo M, Rodrigues S, Stokes P, Walker J, Zimmermann W, Barallon R (15 June 2011). "Comparative analysis of human mitochondrial DNA from World War I bone samples by DNA sequencing and ESI-TOF mass spectrometry". Forensic Science International: Genetics. 7 (1): 1–9. doi:10.1016/j.fsigen.2011.05.009. PMID 21683667.
Monforte JA, Becker CH (1 March 1997). "High-throughput DNA analysis by time-of-flight mass spectrometry". Nature Medicine. 3 (3): 360–62. doi:10.1038/nm0397-360. PMID 9055869. S2CID 28386145.
Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM (8 February 2010). "Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics". Proceedings of the National Academy of Sciences. 107 (9): 4371–76. Bibcode:2010PNAS..107.4371B. doi:10.1073/pnas.0911295107. PMC 2840111. PMID 20142485.
Kan CW, Fredlake CP, Doherty EA, Barron AE (1 November 2004). "DNA sequencing and genotyping in miniaturized electrophoresis systems". Electrophoresis. 25 (21–22): 3564–88. doi:10.1002/elps.200406161. PMID 15565709. S2CID 4851728.
Chen YJ, Roller EE, Huang X (2010). "DNA sequencing by denaturation: experimental proof of concept with an integrated fluidic device". Lab on a Chip. 10 (9): 1153–59. doi:10.1039/b921417h. PMC 2881221. PMID 20390134.
Bell DC, Thomas WK, Murtagh KM, Dionne CA, Graham AC, Anderson JE, Glover WR (9 October 2012). "DNA Base Identification by Electron Microscopy". Microscopy and Microanalysis. 18 (5): 1049–53. Bibcode:2012MiMic..18.1049B. doi:10.1017/S1431927612012615. PMID 23046798. S2CID 25713635.
Pareek CS, Smoczynski R, Tretyn A (November 2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Pareek CS, Smoczynski R, Tretyn A (2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Fujimori S, Hirai N, Ohashi H, Masuoka K, Nishikimi A, Fukui Y, Washio T, Oshikubo T, Yamashita T, Miyamoto-Sato E (2012). "Next-generation sequencing coupled with a cell-free display technology for high-throughput production of reliable interactome data". Scientific Reports. 2: 691. Bibcode:2012NatSR...2..691F. doi:10.1038/srep00691. PMC 3466446. PMID 23056904.
Harbers M (2008). "The Current Status of cDNA Cloning". Genomics. 91 (3): 232–42. doi:10.1016/j.ygeno.2007.11.004. PMID 18222633.
Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, et al. (2014). "Comparison of Library Preparation Methods Reveals Their Impact on Interpretation of Metatranscriptomic Data". BMC Genomics. 15 (1): 912–12. doi:10.1186/1471-2164-15-912. PMC 4213505. PMID 25331572.
Severin J, Lizio M, Harshbarger J, Kawaji H, Daub CO, Hayashizaki Y, Bertin N, Forrest AR (2014). "Interactive visualization and analysis of large-scale sequencing datasets using ZENBU". Nat. Biotechnol. 32 (3): 217–19. doi:10.1038/nbt.2840. PMID 24727769. S2CID 26575621.
Shmilovici A, Ben-Gal I (2007). "Using a VOM model for reconstructing potential coding regions in EST sequences" (PDF). Computational Statistics. 22 (1): 49–69. doi:10.1007/s00180-007-0021-8. S2CID 2737235. Archived from the original (PDF) on 31 May 2020. Retrieved 10 January 2014.
Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM (2013). "An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis". PLOS ONE. 8 (12): e85024. Bibcode:2013PLoSO...885024D. doi:10.1371/journal.pone.0085024. PMC 3871669. PMID 24376861.
Martin, Marcel (2 May 2011). "Cutadapt removes adapter sequences from high-throughput sequencing reads". EMBnet.journal. 17 (1): 10. doi:10.14806/ej.17.1.200.
Smeds L, Künstner A (19 October 2011). "ConDeTri--a content dependent read trimmer for Illumina data". PLOS ONE. 6 (10): e26314. Bibcode:2011PLoSO...626314S. doi:10.1371/journal.pone.0026314. PMC 3198461. PMID 22039460.
Prezza N, Del Fabbro C, Vezzi F, De Paoli E, Policriti A (2012). "Erne-Bs5". Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine. Vol. 12. pp. 12–19. doi:10.1145/2382936.2382938. ISBN 9781450316705. S2CID 5673753.
Schmieder R, Edwards R (March 2011). "Quality control and preprocessing of metagenomic datasets". Bioinformatics. 27 (6): 863–4. doi:10.1093/bioinformatics/btr026. PMC 3051327. PMID 21278185.
Bolger AM, Lohse M, Usadel B (August 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–20. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Cox MP, Peterson DA, Biggs PJ (September 2010). "SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data". BMC Bioinformatics. 11 (1): 485. doi:10.1186/1471-2105-11-485. PMC 2956736. PMID 20875133.
Murray TH (January 1991). "Ethical issues in human genome research". FASEB Journal. 5 (1): 55–60. doi:10.1096/fasebj.5.1.1825074. PMID 1825074. S2CID 20009748.
Robertson JA (August 2003). "The $1000 genome: ethical and legal issues in whole genome sequencing of individuals". The American Journal of Bioethics. 3 (3): W–IF1. doi:10.1162/152651603322874762. PMID 14735880. S2CID 15357657.
Goldenberg AJ, Sharp RR (February 2012). "The ethical hazards and programmatic challenges of genomic newborn screening". JAMA. 307 (5): 461–2. doi:10.1001/jama.2012.68. PMC 3868436. PMID 22298675.
Bloss CS, Schork NJ, Topol EJ (February 2011). "Effect of direct-to-consumer genomewide profiling to assess disease risk". The New England Journal of Medicine. 364 (6): 524–34. doi:10.1056/NEJMoa1011893. PMC 3786730. PMID 21226570.
Sajeer P, Muhammad (4 May 2023). "Disruptive technology: Exploring the ethical, legal, political, and societal implications of nanopore sequencing technology". EMBO Reports. 24 (5): e56619. doi:10.15252/embr.202256619. PMC 10157308. PMID 36988424. S2CID 257803254.

espacenet.com

worldwide.espacenet.com

"Espacenet – Bibliographic data". worldwide.espacenet.com.
US patent 20060029957, ZS Genetics, "Systems and methods of analyzing nucleic acid polymers and related components", issued 14 July 2005

flxlexblog.wordpress.com

"De novo bacterial genome assembly: a solved problem?". 5 July 2013.

genome.gov

Wetterstrand, Kris. "DNA Sequencing Costs: Data from the NHGRI Genome Sequencing Program (GSP)". National Human Genome Research Institute. Retrieved 30 May 2013.
"Grant Information". National Human Genome Research Institute (NHGRI).
Statement of Administration policy, Executive Office of the President, Office of Management and Budget, 27 April 2007
National Human Genome Research Institute (21 May 2008). "President Bush Signs the Genetic Information Nondiscrimination Act of 2008". Retrieved 17 February 2014.

genomeweb.com

"After a Year of Testing, Two Early PacBio Customers Expect More Routine Use of RS Sequencer in 2012". GenomeWeb. 10 January 2012.(registration required)
"PacBio Sales Start to Pick Up as Company Delivers on Product Enhancements". 12 February 2013.
"PacBio Launches Higher-Throughput, Lower-Cost Single-Molecule Sequencing System". October 2015.

github.com

Mykrobe, Mykrobe-tools, 24 December 2022, retrieved 2 January 2023

globenewswire.com

"Pacific Biosciences Introduces New Chemistry With Longer Read Lengths to Detect Novel Features in DNA Sequence and Advance Genome Studies of Large Organisms" (Press release). 2013.

google.ge

Canard B, Sarfati S (13 October 1994), Novel derivatives usable for the sequencing of nucleic acids, retrieved 9 March 2016

handle.net

hdl.handle.net

Elsayed, Fadwa A.; Grolleman, Judith E.; Ragunathan, Abiramy; Buchanan, Daniel D.; van Wezel, Tom; de Voer, Richarda M.; Boot, Arnoud; Stojovska, Marija Staninova; Mahmood, Khalid; Clendenning, Mark; de Miranda, Noel; Dymerska, Dagmara; Egmond, Demi van; Gallinger, Steven; Georgeson, Peter; Hoogerbrugge, Nicoline; Hopper, John L.; Jansen, Erik A.M.; Jenkins, Mark A.; Joo, Jihoon E.; Kuiper, Roland P.; Ligtenberg, Marjolijn J.L.; Lubinski, Jan; Macrae, Finlay A.; Morreau, Hans; Newcomb, Polly; Nielsen, Maartje; Palles, Claire; Park, Daniel J.; Pope, Bernard J.; Rosty, Christophe; Ruiz Ponte, Clara; Schackert, Hans K.; Sijmons, Rolf H.; Tomlinson, Ian P.; Tops, Carli M.J.; Vreede, Lilian; Walker, Romy; Win, Aung K. (December 2020). "Monoallelic NTHL1 Loss-of-Function Variants and Risk of Polyposis and Colorectal Cancer". Gastroenterology. 159 (6): 2241–2243.e6. doi:10.1053/j.gastro.2020.08.042. hdl:2066/228713. PMC 7899696. PMID 32860789.
Fair RB, Khlystov A, Tailor TD, Ivanov V, Evans RD, Srinivasan V, Pamula VK, Pollack MG, Griffin PB, Zhou J (January 2007). "Chemical and Biological Applications of Digital-Microfluidic Devices". IEEE Design & Test of Computers. 24 (1): 10–24. CiteSeerX 10.1.1.559.1440. doi:10.1109/MDT.2007.8. hdl:10161/6987. S2CID 10122940.
Morey M, Fernández-Marmiesse A, Castiñeiras D, Fraga JM, Couce ML, Cocho JA (2013). "A glimpse into past, present, and future DNA sequencing". Molecular Genetics and Metabolism. 110 (1–2): 3–24. doi:10.1016/j.ymgme.2013.04.024. hdl:20.500.11940/2036. PMID 23742747.

harvard.edu

ui.adsabs.harvard.edu

Callaway, Ewen (17 February 2021). "Million-year-old mammoth genomes shatter record for oldest ancient DNA – Permafrost-preserved teeth, up to 1.6 million years old, identify a new kind of mammoth in Siberia". Nature. 590 (7847): 537–538. Bibcode:2021Natur.590..537C. doi:10.1038/d41586-021-00436-x. PMID 33597786.
Schleusener V, Köser CU, Beckert P, Niemann S, Feuerriegel S (2017). "Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools". Sci Rep. 7: 46327. Bibcode:2017NatSR...746327S. doi:10.1038/srep46327. PMC 7365310. PMID 28425484.
Bradley, Phelim; Gordon, N. Claire; Walker, Timothy M.; Dunn, Laura; Heys, Simon; Huang, Bill; Earle, Sarah; Pankhurst, Louise J.; Anson, Luke; de Cesare, Mariateresa; Piazza, Paolo; Votintseva, Antonina A.; Golubchik, Tanya; Wilson, Daniel J.; Wyllie, David H.; Diel, Roland; Niemann, Stefan; Feuerriegel, Silke; Kohl, Thomas A.; Ismail, Nazir; Omar, Shaheed V.; Smith, E. Grace; Buck, David; McVean, Gil; Walker, A. Sarah; Peto, Tim E. A.; Crook, Derrick W.; Iqbal, Zamin (21 December 2015). "Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis". Nature Communications. 6 (1): 10063. Bibcode:2015NatCo...610063B. doi:10.1038/ncomms10063. PMC 4703848. PMID 26686880.
Ehrlich M, Wang RY (June 1981). "5-Methylcytosine in eukaryotic DNA". Science. 212 (4501): 1350–7. Bibcode:1981Sci...212.1350E. doi:10.1126/science.6262918. PMID 6262918.
Czernecki, Dariusz; Bonhomme, Frédéric; Kaminski, Pierre-Alexandre; Delarue, Marc (5 August 2021). "Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA". Nature Communications. 12 (1): 4710. Bibcode:2021NatCo..12.4710C. doi:10.1038/s41467-021-25064-x. PMC 8342488. PMID 34354070. S2CID 233745192.
Min Jou W, Haegeman G, Ysebaert M, Fiers W (May 1972). "Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein". Nature. 237 (5350): 82–8. Bibcode:1972Natur.237...82J. doi:10.1038/237082a0. PMID 4555447. S2CID 4153893.
Fiers W, Contreras R, Duerinck F, Haegeman G, Iserentant D, Merregaert J, Min Jou W, Molemans F, Raeymaekers A, Van den Berghe A, Volckaert G, Ysebaert M (April 1976). "Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene". Nature. 260 (5551): 500–7. Bibcode:1976Natur.260..500F. doi:10.1038/260500a0. PMID 1264203. S2CID 4289674.
Padmanabhan R, Jay E, Wu R (June 1974). "Chemical synthesis of a primer and its use in the sequence analysis of the lysozyme gene of bacteriophage T4". Proceedings of the National Academy of Sciences of the United States of America. 71 (6): 2510–4. Bibcode:1974PNAS...71.2510P. doi:10.1073/pnas.71.6.2510. PMC 388489. PMID 4526223.
Maxam AM, Gilbert W (February 1977). "A new method for sequencing DNA". Proc. Natl. Acad. Sci. USA. 74 (2): 560–64. Bibcode:1977PNAS...74..560M. doi:10.1073/pnas.74.2.560. PMC 392330. PMID 265521.
Gilbert W, Maxam A (December 1973). "The Nucleotide Sequence of the lac Operator". Proc. Natl. Acad. Sci. U.S.A. 70 (12): 3581–84. Bibcode:1973PNAS...70.3581G. doi:10.1073/pnas.70.12.3581. PMC 427284. PMID 4587255.
Sanger F, Nicklen S, Coulson AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc. Natl. Acad. Sci. USA. 74 (12): 5463–77. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE (12 June 1986). "Fluorescence Detection in Automated DNA Sequence Analysis". Nature. 321 (6071): 674–79. Bibcode:1986Natur.321..674S. doi:10.1038/321674a0. PMID 3713851. S2CID 27800972.
Prober JM, Trainor GL, Dam RJ, Hobbs FW, Robertson CW, Zagursky RJ, Cocuzza AJ, Jensen MA, Baumeister K (16 October 1987). "A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides". Science. 238 (4825): 336–41. Bibcode:1987Sci...238..336P. doi:10.1126/science.2443975. PMID 2443975.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF (June 1991). "Complementary DNA sequencing: expressed sequence tags and human genome project". Science. 252 (5013): 1651–56. Bibcode:1991Sci...252.1651A. doi:10.1126/science.2047873. PMID 2047873. S2CID 13436211.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM (July 1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (February 2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Venter JC, Adams MD, et al. (February 2001). "The sequence of the human genome". Science. 291 (5507): 1304–51. Bibcode:2001Sci...291.1304V. doi:10.1126/science.1058040. PMID 11181995.
Duhaime MB, Deng L, Poulos BT, Sullivan MB (2012). "Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method". Environ. Microbiol. 14 (9): 2526–37. Bibcode:2012EnvMi..14.2526D. doi:10.1111/j.1462-2920.2012.02791.x. PMC 3466414. PMID 22713159.
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012). "Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species". PLOS ONE. 7 (5): e37135. Bibcode:2012PLoSO...737135P. doi:10.1371/journal.pone.0037135. PMC 3365034. PMID 22675423.
Margulies M, Egholm M, et al. (September 2005). "Genome Sequencing in Open Microfabricated High Density Picoliter Reactors". Nature. 437 (7057): 376–80. Bibcode:2005Natur.437..376M. doi:10.1038/nature03959. PMC 1464427. PMID 16056220.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Hall N (May 2007). "Advanced sequencing technologies and their wider impact in microbiology". J. Exp. Biol. 210 (Pt 9): 1518–25. Bibcode:2007JExpB.210.1518H. doi:10.1242/jeb.001370. PMID 17449817.
Church GM (January 2006). "Genomes for all". Sci. Am. 294 (1): 46–54. Bibcode:2006SciAm.294a..46C. doi:10.1038/scientificamerican0106-46. PMID 16468433. S2CID 28769137.(subscription required)
Clarke J, Wu HC, Jayasinghe L, Patel A, Reid S, Bayley H (April 2009). "Continuous base identification for single-molecule nanopore DNA sequencing". Nature Nanotechnology. 4 (4): 265–70. Bibcode:2009NatNa...4..265C. doi:10.1038/nnano.2009.12. PMID 19350039.
dela Torre R, Larkin J, Singer A, Meller A (2012). "Fabrication and characterization of solid-state nanopore arrays for high-throughput DNA sequencing". Nanotechnology. 23 (38): 385308. Bibcode:2012Nanot..23L5308D. doi:10.1088/0957-4484/23/38/385308. PMC 3557807. PMID 22948520.
Pathak B, Lofas H, Prasongkit J, Grigoriev A, Ahuja R, Scheicher RH (2012). "Double-functionalized nanopore-embedded gold electrodes for rapid DNA sequencing". Applied Physics Letters. 100 (2): 023701. Bibcode:2012ApPhL.100b3701P. doi:10.1063/1.3673335.
Korlach J, Marks PJ, Cicero RL, Gray JJ, Murphy DL, Roitman DB, Pham TT, Otto GA, Foquet M, Turner SW (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". Proceedings of the National Academy of Sciences. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (9 September 2005). "Accurate multiplex polony sequencing of an evolved bacterial genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Bentley DR, Balasubramanian S, et al. (2008). "Accurate whole human genome sequencing using reversible terminator chemistry". Nature. 456 (7218): 53–59. Bibcode:2008Natur.456...53B. doi:10.1038/nature07517. PMC 2581791. PMID 18987734.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, et al. (January 2010). "Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Drmanac R, Sparks AB, et al. (2010). "Human Genome Sequencing Using Unchained Base Reads in Self-Assembling DNA Nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Di Ventra M (2013). "Fast DNA sequencing by electrical means inches closer". Nanotechnology. 24 (34): 342501. Bibcode:2013Nanot..24H2501D. doi:10.1088/0957-4484/24/34/342501. PMID 23899780. S2CID 140101884.
Ohshiro T, Matsubara K, Tsutsui M, Furuhashi M, Taniguchi M, Kawai T (2012). "Single-molecule electrical random resequencing of DNA and RNA". Sci Rep. 2: 501. Bibcode:2012NatSR...2..501O. doi:10.1038/srep00501. PMC 3392642. PMID 22787559.
Qin Y, Schneider TM, Brenner MP (2012). Gibas C (ed.). "Sequencing by Hybridization of Long Targets". PLOS ONE. 7 (5): e35819. Bibcode:2012PLoSO...735819Q. doi:10.1371/journal.pone.0035819. PMC 3344849. PMID 22574124.
Edwards JR, Ruparel H, Ju J (2005). "Mass-spectrometry DNA sequencing". Mutation Research. 573 (1–2): 3–12. Bibcode:2005MRFMM.573....3E. doi:10.1016/j.mrfmmm.2004.07.021. PMID 15829234.
Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM (8 February 2010). "Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics". Proceedings of the National Academy of Sciences. 107 (9): 4371–76. Bibcode:2010PNAS..107.4371B. doi:10.1073/pnas.0911295107. PMC 2840111. PMID 20142485.
Bell DC, Thomas WK, Murtagh KM, Dionne CA, Graham AC, Anderson JE, Glover WR (9 October 2012). "DNA Base Identification by Electron Microscopy". Microscopy and Microanalysis. 18 (5): 1049–53. Bibcode:2012MiMic..18.1049B. doi:10.1017/S1431927612012615. PMID 23046798. S2CID 25713635.
Fujimori S, Hirai N, Ohashi H, Masuoka K, Nishikimi A, Fukui Y, Washio T, Oshikubo T, Yamashita T, Miyamoto-Sato E (2012). "Next-generation sequencing coupled with a cell-free display technology for high-throughput production of reliable interactome data". Scientific Reports. 2: 691. Bibcode:2012NatSR...2..691F. doi:10.1038/srep00691. PMC 3466446. PMID 23056904.
Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM (2013). "An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis". PLOS ONE. 8 (12): e85024. Bibcode:2013PLoSO...885024D. doi:10.1371/journal.pone.0085024. PMC 3871669. PMID 24376861.
Smeds L, Künstner A (19 October 2011). "ConDeTri--a content dependent read trimmer for Illumina data". PLOS ONE. 6 (10): e26314. Bibcode:2011PLoSO...626314S. doi:10.1371/journal.pone.0026314. PMC 3198461. PMID 22039460.

mcb.harvard.edu

"The Harvard Nanopore Group". Mcb.harvard.edu. Archived from the original on 21 February 2002. Retrieved 15 November 2009.

helicosbio.com

"HeliScope Gene Sequencing / Genetic Analyzer System : Helicos BioSciences". 2 November 2009. Archived from the original on 2 November 2009.

illumina.com

"Quality Scores for Next-Generation Sequencing" (PDF). Illumina. 31 October 2011. Retrieved 8 May 2018.
"Scalable Nucleic Acid Quality Assessments for Illumina Next-Generation Sequencing Library Prep" (PDF). Retrieved 27 December 2017.

mgitech.cn

en.mgitech.cn

"BGI and MGISEQ". en.mgitech.cn. Retrieved 5 July 2018.

nature.com

blogs.nature.com

Baker, Monya (11 October 2012). "US ethics panel reports on DNA sequencing and privacy". Nature News Blog.

nih.gov

pubmed.ncbi.nlm.nih.gov

"Next-generation" remains in broad use as of 2019. For instance, Straiton J, Free T, Sawyer A, Martin J (February 2019). "From Sanger Sequencing to Genome Databases and Beyond". BioTechniques. 66 (2): 60–63. doi:10.2144/btn-2019-0011. PMID 30744413. Next-generation sequencing (NGS) technologies have revolutionized genomic research. (opening sentence of the article)
Behjati S, Tarpey PS (December 2013). "What is next generation sequencing?". Archives of Disease in Childhood: Education and Practice Edition. 98 (6): 236–8. doi:10.1136/archdischild-2013-304340. PMC 3841808. PMID 23986538.
Chmielecki J, Meyerson M (14 January 2014). "DNA sequencing of cancer: what have we learned?". Annual Review of Medicine. 65 (1): 63–79. doi:10.1146/annurev-med-060712-200152. PMID 24274178.
Abate AR, Hung T, Sperling RA, Mary P, Rotem A, Agresti JJ, et al. (December 2013). "DNA sequence analysis with droplet-based microfluidics". Lab on a Chip. 13 (24): 4864–9. doi:10.1039/c3lc50905b. PMC 4090915. PMID 24185402.
Pekin D, Skhiri Y, Baret JC, Le Corre D, Mazutis L, Salem CB, et al. (July 2011). "Quantitative and sensitive detection of rare mutations using droplet-based microfluidics". Lab on a Chip. 11 (13): 2156–66. doi:10.1039/c1lc20128j. PMID 21594292.
Olsvik O, Wahlberg J, Petterson B, Uhlén M, Popovic T, Wachsmuth IK, Fields PI (January 1993). "Use of automated sequencing of polymerase chain reaction-generated amplicons to identify three types of cholera toxin subunit B in Vibrio cholerae O1 strains". J. Clin. Microbiol. 31 (1): 22–25. doi:10.1128/JCM.31.1.22-25.1993. PMC 262614. PMID 7678018.
Pettersson E, Lundeberg J, Ahmadian A (February 2009). "Generations of sequencing technologies". Genomics. 93 (2): 105–11. doi:10.1016/j.ygeno.2008.10.003. PMID 18992322.
Jay E, Bambara R, Padmanabhan R, Wu R (March 1974). "DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping". Nucleic Acids Research. 1 (3): 331–53. doi:10.1093/nar/1.3.331. PMC 344020. PMID 10793670.
Callaway, Ewen (17 February 2021). "Million-year-old mammoth genomes shatter record for oldest ancient DNA – Permafrost-preserved teeth, up to 1.6 million years old, identify a new kind of mammoth in Siberia". Nature. 590 (7847): 537–538. Bibcode:2021Natur.590..537C. doi:10.1038/d41586-021-00436-x. PMID 33597786.
Castro, Christina; Marine, Rachel; Ramos, Edward; Ng, Terry Fei Fan (2019). "The effect of variant interference on de novo assembly for viral deep sequencing". BMC Genomics. 21 (1): 421. bioRxiv 10.1101/815480. doi:10.1186/s12864-020-06801-w. PMC 7306937. PMID 32571214.
Wohl, Shirlee; Schaffner, Stephen F.; Sabeti, Pardis C. (2016). "Genomic Analysis of Viral Outbreaks". Annual Review of Virology. 3 (1): 173–195. doi:10.1146/annurev-virology-110615-035747. PMC 5210220. PMID 27501264.
Boycott, Kym M.; Vanstone, Megan R.; Bulman, Dennis E.; MacKenzie, Alex E. (October 2013). "Rare-disease genetics in the era of next-generation sequencing: discovery to translation". Nature Reviews Genetics. 14 (10): 681–691. doi:10.1038/nrg3555. PMID 23999272. S2CID 8496181.
Bean, Lora; Funke, Birgit; Carlston, Colleen M.; Gannon, Jennifer L.; Kantarci, Sibel; Krock, Bryan L.; Zhang, Shulin; Bayrak-Toydemir, Pinar (March 2020). "Diagnostic gene sequencing panels: from design to report—a technical standard of the American College of Medical Genetics and Genomics (ACMG)". Genetics in Medicine. 22 (3): 453–461. doi:10.1038/s41436-019-0666-z. ISSN 1098-3600. PMID 31732716.
Schleusener V, Köser CU, Beckert P, Niemann S, Feuerriegel S (2017). "Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools". Sci Rep. 7: 46327. Bibcode:2017NatSR...746327S. doi:10.1038/srep46327. PMC 7365310. PMID 28425484.
Mahé P, El Azami M, Barlas P, Tournoud M (2019). "A large scale evaluation of TBProfiler and Mykrobe for antibiotic resistance prediction in Mycobacterium tuberculosis". PeerJ. 7: e6857. doi:10.7717/peerj.6857. PMC 6500375. PMID 31106066.
Bradley, Phelim; Gordon, N. Claire; Walker, Timothy M.; Dunn, Laura; Heys, Simon; Huang, Bill; Earle, Sarah; Pankhurst, Louise J.; Anson, Luke; de Cesare, Mariateresa; Piazza, Paolo; Votintseva, Antonina A.; Golubchik, Tanya; Wilson, Daniel J.; Wyllie, David H.; Diel, Roland; Niemann, Stefan; Feuerriegel, Silke; Kohl, Thomas A.; Ismail, Nazir; Omar, Shaheed V.; Smith, E. Grace; Buck, David; McVean, Gil; Walker, A. Sarah; Peto, Tim E. A.; Crook, Derrick W.; Iqbal, Zamin (21 December 2015). "Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis". Nature Communications. 6 (1): 10063. Bibcode:2015NatCo...610063B. doi:10.1038/ncomms10063. PMC 4703848. PMID 26686880.
Moréra S, Larivière L, Kurzeck J, Aschke-Sonnenborn U, Freemont PS, Janin J, Rüger W (August 2001). "High resolution crystal structures of T4 phage beta-glucosyltransferase: induced fit and effect of substrate and metal binding". Journal of Molecular Biology. 311 (3): 569–77. doi:10.1006/jmbi.2001.4905. PMID 11493010.
Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA, Gehrke C (April 1982). "Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells". Nucleic Acids Research. 10 (8): 2709–21. doi:10.1093/nar/10.8.2709. PMC 320645. PMID 7079182.
Ehrlich M, Wang RY (June 1981). "5-Methylcytosine in eukaryotic DNA". Science. 212 (4501): 1350–7. Bibcode:1981Sci...212.1350E. doi:10.1126/science.6262918. PMID 6262918.
Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, et al. (November 2011). "Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine". Nature Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Czernecki, Dariusz; Bonhomme, Frédéric; Kaminski, Pierre-Alexandre; Delarue, Marc (5 August 2021). "Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA". Nature Communications. 12 (1): 4710. Bibcode:2021NatCo..12.4710C. doi:10.1038/s41467-021-25064-x. PMC 8342488. PMID 34354070. S2CID 233745192.
Watson JD, Crick FH (1953). "The structure of DNA". Cold Spring Harb. Symp. Quant. Biol. 18: 123–31. doi:10.1101/SQB.1953.018.01.020. PMID 13168976.
Min Jou W, Haegeman G, Ysebaert M, Fiers W (May 1972). "Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein". Nature. 237 (5350): 82–8. Bibcode:1972Natur.237...82J. doi:10.1038/237082a0. PMID 4555447. S2CID 4153893.
Fiers W, Contreras R, Duerinck F, Haegeman G, Iserentant D, Merregaert J, Min Jou W, Molemans F, Raeymaekers A, Van den Berghe A, Volckaert G, Ysebaert M (April 1976). "Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene". Nature. 260 (5551): 500–7. Bibcode:1976Natur.260..500F. doi:10.1038/260500a0. PMID 1264203. S2CID 4289674.
Ozsolak F, Milos PM (February 2011). "RNA sequencing: advances, challenges and opportunities". Nature Reviews Genetics. 12 (2): 87–98. doi:10.1038/nrg2934. PMC 3031867. PMID 21191423.
Padmanabhan R, Jay E, Wu R (June 1974). "Chemical synthesis of a primer and its use in the sequence analysis of the lysozyme gene of bacteriophage T4". Proceedings of the National Academy of Sciences of the United States of America. 71 (6): 2510–4. Bibcode:1974PNAS...71.2510P. doi:10.1073/pnas.71.6.2510. PMC 388489. PMID 4526223.
Onaga LA (June 2014). "Ray Wu as Fifth Business: Demonstrating Collective Memory in the History of DNA Sequencing". Studies in the History and Philosophy of Science. Part C. 46: 1–14. doi:10.1016/j.shpsc.2013.12.006. PMID 24565976.
Wu R (1972). "Nucleotide sequence analysis of DNA". Nature New Biology. 236 (68): 198–200. doi:10.1038/newbio236198a0. PMID 4553110.
Padmanabhan R, Wu R (1972). "Nucleotide sequence analysis of DNA. IX. Use of oligonucleotides of defined sequence as primers in DNA sequence analysis". Biochem. Biophys. Res. Commun. 48 (5): 1295–302. doi:10.1016/0006-291X(72)90852-2. PMID 4560009.
Wu R, Tu CD, Padmanabhan R (1973). "Nucleotide sequence analysis of DNA. XII. The chemical synthesis and sequence analysis of a dodecadeoxynucleotide which binds to the endolysin gene of bacteriophage lambda". Biochem. Biophys. Res. Commun. 55 (4): 1092–99. doi:10.1016/S0006-291X(73)80007-5. PMID 4358929.
Maxam AM, Gilbert W (February 1977). "A new method for sequencing DNA". Proc. Natl. Acad. Sci. USA. 74 (2): 560–64. Bibcode:1977PNAS...74..560M. doi:10.1073/pnas.74.2.560. PMC 392330. PMID 265521.
Gilbert W, Maxam A (December 1973). "The Nucleotide Sequence of the lac Operator". Proc. Natl. Acad. Sci. U.S.A. 70 (12): 3581–84. Bibcode:1973PNAS...70.3581G. doi:10.1073/pnas.70.12.3581. PMC 427284. PMID 4587255.
Sanger, F.; Coulson, A. R. (25 May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". Journal of Molecular Biology. 94 (3): 441–448. doi:10.1016/0022-2836(75)90213-2. ISSN 0022-2836. PMID 1100841.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Elsayed, Fadwa A.; Grolleman, Judith E.; Ragunathan, Abiramy; Buchanan, Daniel D.; van Wezel, Tom; de Voer, Richarda M.; Boot, Arnoud; Stojovska, Marija Staninova; Mahmood, Khalid; Clendenning, Mark; de Miranda, Noel; Dymerska, Dagmara; Egmond, Demi van; Gallinger, Steven; Georgeson, Peter; Hoogerbrugge, Nicoline; Hopper, John L.; Jansen, Erik A.M.; Jenkins, Mark A.; Joo, Jihoon E.; Kuiper, Roland P.; Ligtenberg, Marjolijn J.L.; Lubinski, Jan; Macrae, Finlay A.; Morreau, Hans; Newcomb, Polly; Nielsen, Maartje; Palles, Claire; Park, Daniel J.; Pope, Bernard J.; Rosty, Christophe; Ruiz Ponte, Clara; Schackert, Hans K.; Sijmons, Rolf H.; Tomlinson, Ian P.; Tops, Carli M.J.; Vreede, Lilian; Walker, Romy; Win, Aung K. (December 2020). "Monoallelic NTHL1 Loss-of-Function Variants and Risk of Polyposis and Colorectal Cancer". Gastroenterology. 159 (6): 2241–2243.e6. doi:10.1053/j.gastro.2020.08.042. hdl:2066/228713. PMC 7899696. PMID 32860789.
Sanger F, Nicklen S, Coulson AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc. Natl. Acad. Sci. USA. 74 (12): 5463–77. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Beck S, Pohl FM (1984). "DNA sequencing with direct blotting electrophoresis". EMBO J. 3 (12): 2905–09. doi:10.1002/j.1460-2075.1984.tb02230.x. PMC 557787. PMID 6396083.
Feldmann H, et al. (1994). "Complete DNA sequence of yeast chromosome II". EMBO J. 13 (24): 5795–809. doi:10.1002/j.1460-2075.1994.tb06923.x. PMC 395553. PMID 7813418.
Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE (12 June 1986). "Fluorescence Detection in Automated DNA Sequence Analysis". Nature. 321 (6071): 674–79. Bibcode:1986Natur.321..674S. doi:10.1038/321674a0. PMID 3713851. S2CID 27800972.
Prober JM, Trainor GL, Dam RJ, Hobbs FW, Robertson CW, Zagursky RJ, Cocuzza AJ, Jensen MA, Baumeister K (16 October 1987). "A system for rapid DNA sequencing with fluorescent chain-terminating dideoxynucleotides". Science. 238 (4825): 336–41. Bibcode:1987Sci...238..336P. doi:10.1126/science.2443975. PMID 2443975.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF (June 1991). "Complementary DNA sequencing: expressed sequence tags and human genome project". Science. 252 (5013): 1651–56. Bibcode:1991Sci...252.1651A. doi:10.1126/science.2047873. PMID 2047873. S2CID 13436211.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, Bult CJ, Tomb JF, Dougherty BA, Merrick JM (July 1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (February 2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.
Venter JC, Adams MD, et al. (February 2001). "The sequence of the human genome". Science. 291 (5507): 1304–51. Bibcode:2001Sci...291.1304V. doi:10.1126/science.1058040. PMID 11181995.
Yang, Aimin; Zhang, Wei; Wang, Jiahao; Yang, Ke; Han, Yang; Zhang, Limin (2020). "Review on the Application of Machine Learning Algorithms in the Sequence Data Mining of DNA". Frontiers in Bioengineering and Biotechnology. 8: 1032. doi:10.3389/fbioe.2020.01032. PMC 7498545. PMID 33015010.
Ronaghi M, Karamohamed S, Pettersson B, Uhlén M, Nyrén P (1996). "Real-time DNA sequencing using detection of pyrophosphate release". Analytical Biochemistry. 242 (1): 84–89. doi:10.1006/abio.1996.0432. PMID 8923969.
Ewing B, Green P (March 1998). "Base-calling of automated sequencer traces using phred. II. Error probabilities". Genome Res. 8 (3): 186–94. doi:10.1101/gr.8.3.186. PMID 9521922.
Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J, Corcoran K (2000). "Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays". Nature Biotechnology. 18 (6): 630–34. doi:10.1038/76469. PMID 10835600. S2CID 13884154.
"maxam gilbert sequencing". PubMed.
Sanger F, Coulson AR (May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". J. Mol. Biol. 94 (3): 441–48. doi:10.1016/0022-2836(75)90213-2. PMID 1100841.
Nyren, P.; Pettersson, B.; Uhlen, M. (January 1993). "Solid Phase DNA Minisequencing by an Enzymatic Luminometric Inorganic Pyrophosphate Detection Assay". Analytical Biochemistry. 208 (1): 171–175. doi:10.1006/abio.1993.1024. PMID 8382019.
Ronaghi, Mostafa; Uhlén, Mathias; Nyrén, Pål (17 July 1998). "A Sequencing Method Based on Real-Time Pyrophosphate". Science. 281 (5375): 363–365. doi:10.1126/science.281.5375.363. PMID 9705713. S2CID 26331871.
Quail MA, Gu Y, Swerdlow H, Mayho M (2012). "Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation". Electrophoresis. 33 (23): 3521–28. doi:10.1002/elps.201200128. PMID 23147856. S2CID 39818212.
Duhaime MB, Deng L, Poulos BT, Sullivan MB (2012). "Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method". Environ. Microbiol. 14 (9): 2526–37. Bibcode:2012EnvMi..14.2526D. doi:10.1111/j.1462-2920.2012.02791.x. PMC 3466414. PMID 22713159.
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012). "Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species". PLOS ONE. 7 (5): e37135. Bibcode:2012PLoSO...737135P. doi:10.1371/journal.pone.0037135. PMC 3365034. PMID 22675423.
Williams R, Peisajovich SG, Miller OJ, Magdassi S, Tawfik DS, Griffiths AD (2006). "Amplification of complex gene libraries by emulsion PCR". Nature Methods. 3 (7): 545–50. doi:10.1038/nmeth896. PMID 16791213. S2CID 27459628.
Margulies M, Egholm M, et al. (September 2005). "Genome Sequencing in Open Microfabricated High Density Picoliter Reactors". Nature. 437 (7057): 376–80. Bibcode:2005Natur.437..376M. doi:10.1038/nature03959. PMC 1464427. PMID 16056220.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Goodwin S, McPherson JD, McCombie WR (May 2016). "Coming of age: ten years of next-generation sequencing technologies". Nature Reviews Genetics. 17 (6): 333–51. doi:10.1038/nrg.2016.49. PMC 10373632. PMID 27184599. S2CID 8295541.
Staden R (11 June 1979). "A strategy of DNA sequencing employing computer programs". Nucleic Acids Research. 6 (7): 2601–10. doi:10.1093/nar/6.7.2601. PMC 327874. PMID 461197.
de Magalhães JP, Finch CE, Janssens G (2010). "Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions". Ageing Research Reviews. 9 (3): 315–23. doi:10.1016/j.arr.2009.10.006. PMC 2878865. PMID 19900591.
Grada A (August 2013). "Next-generation sequencing: methodology and application". J Invest Dermatol. 133 (8): e11. doi:10.1038/jid.2013.248. PMID 23856935.
Hall N (May 2007). "Advanced sequencing technologies and their wider impact in microbiology". J. Exp. Biol. 210 (Pt 9): 1518–25. Bibcode:2007JExpB.210.1518H. doi:10.1242/jeb.001370. PMID 17449817.
Church GM (January 2006). "Genomes for all". Sci. Am. 294 (1): 46–54. Bibcode:2006SciAm.294a..46C. doi:10.1038/scientificamerican0106-46. PMID 16468433. S2CID 28769137.(subscription required)
Schuster SC (January 2008). "Next-generation sequencing transforms today's biology". Nat. Methods. 5 (1): 16–18. doi:10.1038/nmeth1156. PMID 18165802. S2CID 1465786.
ten Bosch JR, Grody WW (2008). "Keeping Up with the Next Generation". The Journal of Molecular Diagnostics. 10 (6): 484–92. doi:10.2353/jmoldx.2008.080027. PMC 2570630. PMID 18832462.
Tucker T, Marra M, Friedman JM (2009). "Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine". The American Journal of Human Genetics. 85 (2): 142–54. doi:10.1016/j.ajhg.2009.06.022. PMC 2725244. PMID 19679224.
Straiton J, Free T, Sawyer A, Martin J (February 2019). "From Sanger sequencing to genome databases and beyond". BioTechniques. 66 (2). Future Science: 60–63. doi:10.2144/btn-2019-0011. PMID 30744413.
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (1 January 2012). "A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and illumina MiSeq sequencers". BMC Genomics. 13 (1): 341. doi:10.1186/1471-2164-13-341. PMC 3431227. PMID 22827831.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (1 January 2012). "Comparison of Next-Generation Sequencing Systems". Journal of Biomedicine and Biotechnology. 2012: 251364. doi:10.1155/2012/251364. PMC 3398667. PMID 22829749.
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J (2013). "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data". Nat. Methods. 10 (6): 563–69. doi:10.1038/nmeth.2474. PMID 23644548. S2CID 205421576.
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK (25 August 2011). "Origins of the Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N Engl J Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Tran B, Brown AM, Bedard PL, Winquist E, Goss GD, Hotte SJ, Welch SA, Hirte HW, Zhang T, Stein LD, Ferretti V, Watt S, Jiao W, Ng K, Ghai S, Shaw P, Petrocelli T, Hudson TJ, Neel BG, Onetto N, Siu LL, McPherson JD, Kamel-Reid S, Dancey JE (1 January 2012). "Feasibility of real time next generation sequencing of cancer genes linked to drug response: Results from a clinical trial". Int. J. Cancer. 132 (7): 1547–55. doi:10.1002/ijc.27817. PMID 22948899. S2CID 72705.(subscription required)
Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, Fomenkov A, Turner SW, Korlach J, Roberts RJ (2 October 2012). "The methylomes of six bacteria". Nucleic Acids Research. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
van Vliet AH (1 January 2010). "Next generation sequencing of microbial transcriptomes: challenges and opportunities". FEMS Microbiology Letters. 302 (1): 1–7. doi:10.1111/j.1574-6968.2009.01767.x. PMID 19735299.
Huang YF, Chen SC, Chiang YS, Chen TH, Chiu KP (2012). "Palindromic sequence impedes sequencing-by-ligation mechanism". BMC Systems Biology. 6 (Suppl 2): S10. doi:10.1186/1752-0509-6-S2-S10. PMC 3521181. PMID 23281822.
Clarke J, Wu HC, Jayasinghe L, Patel A, Reid S, Bayley H (April 2009). "Continuous base identification for single-molecule nanopore DNA sequencing". Nature Nanotechnology. 4 (4): 265–70. Bibcode:2009NatNa...4..265C. doi:10.1038/nnano.2009.12. PMID 19350039.
dela Torre R, Larkin J, Singer A, Meller A (2012). "Fabrication and characterization of solid-state nanopore arrays for high-throughput DNA sequencing". Nanotechnology. 23 (38): 385308. Bibcode:2012Nanot..23L5308D. doi:10.1088/0957-4484/23/38/385308. PMC 3557807. PMID 22948520.
Korlach J, Marks PJ, Cicero RL, Gray JJ, Murphy DL, Roitman DB, Pham TT, Otto GA, Foquet M, Turner SW (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". Proceedings of the National Academy of Sciences. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (9 September 2005). "Accurate multiplex polony sequencing of an evolved bacterial genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Bentley DR, Balasubramanian S, et al. (2008). "Accurate whole human genome sequencing using reversible terminator chemistry". Nature. 456 (7218): 53–59. Bibcode:2008Natur.456...53B. doi:10.1038/nature07517. PMC 2581791. PMID 18987734.
Canard B, Sarfati RS (October 1994). "DNA polymerase fluorescent substrates with reversible 3'-tags". Gene. 148 (1): 1–6. doi:10.1016/0378-1119(94)90226-7. PMID 7523248.
Mardis ER (2008). "Next-generation DNA sequencing methods". Annu Rev Genom Hum Genet. 9: 387–402. doi:10.1146/annurev.genom.9.081307.164359. PMID 18576944.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, et al. (January 2010). "Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, et al. (May 2017). "A reference human genome dataset of the BGISEQ-500 sequencer". GigaScience. 6 (5): 1–9. doi:10.1093/gigascience/gix024. PMC 5467036. PMID 28379488.
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM (July 2008). "A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning". Genome Res. 18 (7): 1051–63. doi:10.1101/gr.076463.108. PMC 2493394. PMID 18477713.
Drmanac R, Sparks AB, et al. (2010). "Human Genome Sequencing Using Unchained Base Reads in Self-Assembling DNA Nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Porreca GJ (2010). "Genome Sequencing on Nanoballs". Nature Biotechnology. 28 (1): 43–44. doi:10.1038/nbt0110-43. PMID 20062041. S2CID 54557996.
Thompson JF, Steinmann KE (October 2010). "Single molecule sequencing with a HeliScope genetic analysis system". Current Protocols in Molecular Biology. Chapter 7: Unit7.10. doi:10.1002/0471142727.mb0710s92. PMC 2954431. PMID 20890904.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Boles DJ, Benton JL, Siew GJ, Levy MH, Thwar PK, Sandahl MA, et al. (November 2011). "Droplet-based pyrosequencing using digital microfluidics". Analytical Chemistry. 83 (22): 8439–47. doi:10.1021/ac201416j. PMC 3690483. PMID 21932784.
Zilionis R, Nainys J, Veres A, Savova V, Zemmour D, Klein AM, Mazutis L (January 2017). "Single-cell barcoding and sequencing using droplet microfluidics". Nature Protocols. 12 (1): 44–73. doi:10.1038/nprot.2016.154. PMID 27929523. S2CID 767782.
Xu M, Fujita D, Hanagata N (December 2009). "Perspectives and challenges of emerging single-molecule DNA sequencing technologies". Small. 5 (23): 2638–49. doi:10.1002/smll.200900976. PMID 19904762.
Schadt EE, Turner S, Kasarskis A (2010). "A window into third-generation sequencing". Human Molecular Genetics. 19 (R2): R227–40. doi:10.1093/hmg/ddq416. PMID 20858600.
Xu M, Endres RG, Arakawa Y (2007). "The electronic properties of DNA bases". Small. 3 (9): 1539–43. doi:10.1002/smll.200600732. PMID 17786897.
Di Ventra M (2013). "Fast DNA sequencing by electrical means inches closer". Nanotechnology. 24 (34): 342501. Bibcode:2013Nanot..24H2501D. doi:10.1088/0957-4484/24/34/342501. PMID 23899780. S2CID 140101884.
Ohshiro T, Matsubara K, Tsutsui M, Furuhashi M, Taniguchi M, Kawai T (2012). "Single-molecule electrical random resequencing of DNA and RNA". Sci Rep. 2: 501. Bibcode:2012NatSR...2..501O. doi:10.1038/srep00501. PMC 3392642. PMID 22787559.
Hanna GJ, Johnson VA, Kuritzkes DR, Richman DD, Martinez-Picado J, Sutton L, Hazelwood JD, D'Aquila RT (1 July 2000). "Comparison of Sequencing by Hybridization and Cycle Sequencing for Genotyping of Human Immunodeficiency Virus Type 1 Reverse Transcriptase". J. Clin. Microbiol. 38 (7): 2715–21. doi:10.1128/JCM.38.7.2715-2721.2000. PMC 87006. PMID 10878069.
Morey M, Fernández-Marmiesse A, Castiñeiras D, Fraga JM, Couce ML, Cocho JA (2013). "A glimpse into past, present, and future DNA sequencing". Molecular Genetics and Metabolism. 110 (1–2): 3–24. doi:10.1016/j.ymgme.2013.04.024. hdl:20.500.11940/2036. PMID 23742747.
Qin Y, Schneider TM, Brenner MP (2012). Gibas C (ed.). "Sequencing by Hybridization of Long Targets". PLOS ONE. 7 (5): e35819. Bibcode:2012PLoSO...735819Q. doi:10.1371/journal.pone.0035819. PMC 3344849. PMID 22574124.
Edwards JR, Ruparel H, Ju J (2005). "Mass-spectrometry DNA sequencing". Mutation Research. 573 (1–2): 3–12. Bibcode:2005MRFMM.573....3E. doi:10.1016/j.mrfmmm.2004.07.021. PMID 15829234.
Hall TA, Budowle B, Jiang Y, Blyn L, Eshoo M, Sannes-Lowery KA, Sampath R, Drader JJ, Hannis JC, Harrell P, Samant V, White N, Ecker DJ, Hofstadler SA (2005). "Base composition analysis of human mitochondrial DNA using electrospray ionization mass spectrometry: A novel tool for the identification and differentiation of humans". Analytical Biochemistry. 344 (1): 53–69. doi:10.1016/j.ab.2005.05.028. PMID 16054106.
Howard R, Encheva V, Thomson J, Bache K, Chan YT, Cowen S, Debenham P, Dixon A, Krause JU, Krishan E, Moore D, Moore V, Ojo M, Rodrigues S, Stokes P, Walker J, Zimmermann W, Barallon R (15 June 2011). "Comparative analysis of human mitochondrial DNA from World War I bone samples by DNA sequencing and ESI-TOF mass spectrometry". Forensic Science International: Genetics. 7 (1): 1–9. doi:10.1016/j.fsigen.2011.05.009. PMID 21683667.
Monforte JA, Becker CH (1 March 1997). "High-throughput DNA analysis by time-of-flight mass spectrometry". Nature Medicine. 3 (3): 360–62. doi:10.1038/nm0397-360. PMID 9055869. S2CID 28386145.
Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM (8 February 2010). "Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics". Proceedings of the National Academy of Sciences. 107 (9): 4371–76. Bibcode:2010PNAS..107.4371B. doi:10.1073/pnas.0911295107. PMC 2840111. PMID 20142485.
Kan CW, Fredlake CP, Doherty EA, Barron AE (1 November 2004). "DNA sequencing and genotyping in miniaturized electrophoresis systems". Electrophoresis. 25 (21–22): 3564–88. doi:10.1002/elps.200406161. PMID 15565709. S2CID 4851728.
Chen YJ, Roller EE, Huang X (2010). "DNA sequencing by denaturation: experimental proof of concept with an integrated fluidic device". Lab on a Chip. 10 (9): 1153–59. doi:10.1039/b921417h. PMC 2881221. PMID 20390134.
Bell DC, Thomas WK, Murtagh KM, Dionne CA, Graham AC, Anderson JE, Glover WR (9 October 2012). "DNA Base Identification by Electron Microscopy". Microscopy and Microanalysis. 18 (5): 1049–53. Bibcode:2012MiMic..18.1049B. doi:10.1017/S1431927612012615. PMID 23046798. S2CID 25713635.
Pareek CS, Smoczynski R, Tretyn A (November 2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Pareek CS, Smoczynski R, Tretyn A (2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Fujimori S, Hirai N, Ohashi H, Masuoka K, Nishikimi A, Fukui Y, Washio T, Oshikubo T, Yamashita T, Miyamoto-Sato E (2012). "Next-generation sequencing coupled with a cell-free display technology for high-throughput production of reliable interactome data". Scientific Reports. 2: 691. Bibcode:2012NatSR...2..691F. doi:10.1038/srep00691. PMC 3466446. PMID 23056904.
Harbers M (2008). "The Current Status of cDNA Cloning". Genomics. 91 (3): 232–42. doi:10.1016/j.ygeno.2007.11.004. PMID 18222633.
Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, et al. (2014). "Comparison of Library Preparation Methods Reveals Their Impact on Interpretation of Metatranscriptomic Data". BMC Genomics. 15 (1): 912–12. doi:10.1186/1471-2164-15-912. PMC 4213505. PMID 25331572.
Severin J, Lizio M, Harshbarger J, Kawaji H, Daub CO, Hayashizaki Y, Bertin N, Forrest AR (2014). "Interactive visualization and analysis of large-scale sequencing datasets using ZENBU". Nat. Biotechnol. 32 (3): 217–19. doi:10.1038/nbt.2840. PMID 24727769. S2CID 26575621.
Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM (2013). "An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis". PLOS ONE. 8 (12): e85024. Bibcode:2013PLoSO...885024D. doi:10.1371/journal.pone.0085024. PMC 3871669. PMID 24376861.
Smeds L, Künstner A (19 October 2011). "ConDeTri--a content dependent read trimmer for Illumina data". PLOS ONE. 6 (10): e26314. Bibcode:2011PLoSO...626314S. doi:10.1371/journal.pone.0026314. PMC 3198461. PMID 22039460.
Schmieder R, Edwards R (March 2011). "Quality control and preprocessing of metagenomic datasets". Bioinformatics. 27 (6): 863–4. doi:10.1093/bioinformatics/btr026. PMC 3051327. PMID 21278185.
Bolger AM, Lohse M, Usadel B (August 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–20. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Cox MP, Peterson DA, Biggs PJ (September 2010). "SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data". BMC Bioinformatics. 11 (1): 485. doi:10.1186/1471-2105-11-485. PMC 2956736. PMID 20875133.
Murray TH (January 1991). "Ethical issues in human genome research". FASEB Journal. 5 (1): 55–60. doi:10.1096/fasebj.5.1.1825074. PMID 1825074. S2CID 20009748.
Robertson JA (August 2003). "The $1000 genome: ethical and legal issues in whole genome sequencing of individuals". The American Journal of Bioethics. 3 (3): W–IF1. doi:10.1162/152651603322874762. PMID 14735880. S2CID 15357657.
Goldenberg AJ, Sharp RR (February 2012). "The ethical hazards and programmatic challenges of genomic newborn screening". JAMA. 307 (5): 461–2. doi:10.1001/jama.2012.68. PMC 3868436. PMID 22298675.
Bloss CS, Schork NJ, Topol EJ (February 2011). "Effect of direct-to-consumer genomewide profiling to assess disease risk". The New England Journal of Medicine. 364 (6): 524–34. doi:10.1056/NEJMoa1011893. PMC 3786730. PMID 21226570.
Sajeer P, Muhammad (4 May 2023). "Disruptive technology: Exploring the ethical, legal, political, and societal implications of nanopore sequencing technology". EMBO Reports. 24 (5): e56619. doi:10.15252/embr.202256619. PMC 10157308. PMID 36988424. S2CID 257803254.

ncbi.nlm.nih.gov

Behjati S, Tarpey PS (December 2013). "What is next generation sequencing?". Archives of Disease in Childhood: Education and Practice Edition. 98 (6): 236–8. doi:10.1136/archdischild-2013-304340. PMC 3841808. PMID 23986538.
Abate AR, Hung T, Sperling RA, Mary P, Rotem A, Agresti JJ, et al. (December 2013). "DNA sequence analysis with droplet-based microfluidics". Lab on a Chip. 13 (24): 4864–9. doi:10.1039/c3lc50905b. PMC 4090915. PMID 24185402.
Olsvik O, Wahlberg J, Petterson B, Uhlén M, Popovic T, Wachsmuth IK, Fields PI (January 1993). "Use of automated sequencing of polymerase chain reaction-generated amplicons to identify three types of cholera toxin subunit B in Vibrio cholerae O1 strains". J. Clin. Microbiol. 31 (1): 22–25. doi:10.1128/JCM.31.1.22-25.1993. PMC 262614. PMID 7678018.
Jay E, Bambara R, Padmanabhan R, Wu R (March 1974). "DNA sequence analysis: a general, simple and rapid method for sequencing large oligodeoxyribonucleotide fragments by mapping". Nucleic Acids Research. 1 (3): 331–53. doi:10.1093/nar/1.3.331. PMC 344020. PMID 10793670.
Castro, Christina; Marine, Rachel; Ramos, Edward; Ng, Terry Fei Fan (2019). "The effect of variant interference on de novo assembly for viral deep sequencing". BMC Genomics. 21 (1): 421. bioRxiv 10.1101/815480. doi:10.1186/s12864-020-06801-w. PMC 7306937. PMID 32571214.
Wohl, Shirlee; Schaffner, Stephen F.; Sabeti, Pardis C. (2016). "Genomic Analysis of Viral Outbreaks". Annual Review of Virology. 3 (1): 173–195. doi:10.1146/annurev-virology-110615-035747. PMC 5210220. PMID 27501264.
Schleusener V, Köser CU, Beckert P, Niemann S, Feuerriegel S (2017). "Mycobacterium tuberculosis resistance prediction and lineage classification from genome sequencing: comparison of automated analysis tools". Sci Rep. 7: 46327. Bibcode:2017NatSR...746327S. doi:10.1038/srep46327. PMC 7365310. PMID 28425484.
Mahé P, El Azami M, Barlas P, Tournoud M (2019). "A large scale evaluation of TBProfiler and Mykrobe for antibiotic resistance prediction in Mycobacterium tuberculosis". PeerJ. 7: e6857. doi:10.7717/peerj.6857. PMC 6500375. PMID 31106066.
Bradley, Phelim; Gordon, N. Claire; Walker, Timothy M.; Dunn, Laura; Heys, Simon; Huang, Bill; Earle, Sarah; Pankhurst, Louise J.; Anson, Luke; de Cesare, Mariateresa; Piazza, Paolo; Votintseva, Antonina A.; Golubchik, Tanya; Wilson, Daniel J.; Wyllie, David H.; Diel, Roland; Niemann, Stefan; Feuerriegel, Silke; Kohl, Thomas A.; Ismail, Nazir; Omar, Shaheed V.; Smith, E. Grace; Buck, David; McVean, Gil; Walker, A. Sarah; Peto, Tim E. A.; Crook, Derrick W.; Iqbal, Zamin (21 December 2015). "Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis". Nature Communications. 6 (1): 10063. Bibcode:2015NatCo...610063B. doi:10.1038/ncomms10063. PMC 4703848. PMID 26686880.
Ehrlich M, Gama-Sosa MA, Huang LH, Midgett RM, Kuo KC, McCune RA, Gehrke C (April 1982). "Amount and distribution of 5-methylcytosine in human DNA from different types of tissues of cells". Nucleic Acids Research. 10 (8): 2709–21. doi:10.1093/nar/10.8.2709. PMC 320645. PMID 7079182.
Song CX, Clark TA, Lu XY, Kislyuk A, Dai Q, Turner SW, et al. (November 2011). "Sensitive and specific single-molecule sequencing of 5-hydroxymethylcytosine". Nature Methods. 9 (1): 75–7. doi:10.1038/nmeth.1779. PMC 3646335. PMID 22101853.
Czernecki, Dariusz; Bonhomme, Frédéric; Kaminski, Pierre-Alexandre; Delarue, Marc (5 August 2021). "Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA". Nature Communications. 12 (1): 4710. Bibcode:2021NatCo..12.4710C. doi:10.1038/s41467-021-25064-x. PMC 8342488. PMID 34354070. S2CID 233745192.
Ozsolak F, Milos PM (February 2011). "RNA sequencing: advances, challenges and opportunities". Nature Reviews Genetics. 12 (2): 87–98. doi:10.1038/nrg2934. PMC 3031867. PMID 21191423.
Padmanabhan R, Jay E, Wu R (June 1974). "Chemical synthesis of a primer and its use in the sequence analysis of the lysozyme gene of bacteriophage T4". Proceedings of the National Academy of Sciences of the United States of America. 71 (6): 2510–4. Bibcode:1974PNAS...71.2510P. doi:10.1073/pnas.71.6.2510. PMC 388489. PMID 4526223.
Maxam AM, Gilbert W (February 1977). "A new method for sequencing DNA". Proc. Natl. Acad. Sci. USA. 74 (2): 560–64. Bibcode:1977PNAS...74..560M. doi:10.1073/pnas.74.2.560. PMC 392330. PMID 265521.
Gilbert W, Maxam A (December 1973). "The Nucleotide Sequence of the lac Operator". Proc. Natl. Acad. Sci. U.S.A. 70 (12): 3581–84. Bibcode:1973PNAS...70.3581G. doi:10.1073/pnas.70.12.3581. PMC 427284. PMID 4587255.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Elsayed, Fadwa A.; Grolleman, Judith E.; Ragunathan, Abiramy; Buchanan, Daniel D.; van Wezel, Tom; de Voer, Richarda M.; Boot, Arnoud; Stojovska, Marija Staninova; Mahmood, Khalid; Clendenning, Mark; de Miranda, Noel; Dymerska, Dagmara; Egmond, Demi van; Gallinger, Steven; Georgeson, Peter; Hoogerbrugge, Nicoline; Hopper, John L.; Jansen, Erik A.M.; Jenkins, Mark A.; Joo, Jihoon E.; Kuiper, Roland P.; Ligtenberg, Marjolijn J.L.; Lubinski, Jan; Macrae, Finlay A.; Morreau, Hans; Newcomb, Polly; Nielsen, Maartje; Palles, Claire; Park, Daniel J.; Pope, Bernard J.; Rosty, Christophe; Ruiz Ponte, Clara; Schackert, Hans K.; Sijmons, Rolf H.; Tomlinson, Ian P.; Tops, Carli M.J.; Vreede, Lilian; Walker, Romy; Win, Aung K. (December 2020). "Monoallelic NTHL1 Loss-of-Function Variants and Risk of Polyposis and Colorectal Cancer". Gastroenterology. 159 (6): 2241–2243.e6. doi:10.1053/j.gastro.2020.08.042. hdl:2066/228713. PMC 7899696. PMID 32860789.
Sanger F, Nicklen S, Coulson AR (December 1977). "DNA sequencing with chain-terminating inhibitors". Proc. Natl. Acad. Sci. USA. 74 (12): 5463–77. Bibcode:1977PNAS...74.5463S. doi:10.1073/pnas.74.12.5463. PMC 431765. PMID 271968.
Beck S, Pohl FM (1984). "DNA sequencing with direct blotting electrophoresis". EMBO J. 3 (12): 2905–09. doi:10.1002/j.1460-2075.1984.tb02230.x. PMC 557787. PMID 6396083.
Feldmann H, et al. (1994). "Complete DNA sequence of yeast chromosome II". EMBO J. 13 (24): 5795–809. doi:10.1002/j.1460-2075.1994.tb06923.x. PMC 395553. PMID 7813418.
Yang, Aimin; Zhang, Wei; Wang, Jiahao; Yang, Ke; Han, Yang; Zhang, Limin (2020). "Review on the Application of Machine Learning Algorithms in the Sequence Data Mining of DNA". Frontiers in Bioengineering and Biotechnology. 8: 1032. doi:10.3389/fbioe.2020.01032. PMC 7498545. PMID 33015010.
Duhaime MB, Deng L, Poulos BT, Sullivan MB (2012). "Towards quantitative metagenomics of wild viruses and other ultra-low concentration DNA samples: a rigorous assessment and optimization of the linker amplification method". Environ. Microbiol. 14 (9): 2526–37. Bibcode:2012EnvMi..14.2526D. doi:10.1111/j.1462-2920.2012.02791.x. PMC 3466414. PMID 22713159.
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012). "Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species". PLOS ONE. 7 (5): e37135. Bibcode:2012PLoSO...737135P. doi:10.1371/journal.pone.0037135. PMC 3365034. PMID 22675423.
Margulies M, Egholm M, et al. (September 2005). "Genome Sequencing in Open Microfabricated High Density Picoliter Reactors". Nature. 437 (7057): 376–80. Bibcode:2005Natur.437..376M. doi:10.1038/nature03959. PMC 1464427. PMID 16056220.
Goodwin S, McPherson JD, McCombie WR (May 2016). "Coming of age: ten years of next-generation sequencing technologies". Nature Reviews Genetics. 17 (6): 333–51. doi:10.1038/nrg.2016.49. PMC 10373632. PMID 27184599. S2CID 8295541.
Staden R (11 June 1979). "A strategy of DNA sequencing employing computer programs". Nucleic Acids Research. 6 (7): 2601–10. doi:10.1093/nar/6.7.2601. PMC 327874. PMID 461197.
de Magalhães JP, Finch CE, Janssens G (2010). "Next-generation sequencing in aging research: emerging applications, problems, pitfalls and possible solutions". Ageing Research Reviews. 9 (3): 315–23. doi:10.1016/j.arr.2009.10.006. PMC 2878865. PMID 19900591.
ten Bosch JR, Grody WW (2008). "Keeping Up with the Next Generation". The Journal of Molecular Diagnostics. 10 (6): 484–92. doi:10.2353/jmoldx.2008.080027. PMC 2570630. PMID 18832462.
Tucker T, Marra M, Friedman JM (2009). "Massively Parallel Sequencing: The Next Big Thing in Genetic Medicine". The American Journal of Human Genetics. 85 (2): 142–54. doi:10.1016/j.ajhg.2009.06.022. PMC 2725244. PMID 19679224.
Quail MA, Smith M, Coupland P, Otto TD, Harris SR, Connor TR, Bertoni A, Swerdlow HP, Gu Y (1 January 2012). "A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and illumina MiSeq sequencers". BMC Genomics. 13 (1): 341. doi:10.1186/1471-2164-13-341. PMC 3431227. PMID 22827831.
Liu L, Li Y, Li S, Hu N, He Y, Pong R, Lin D, Lu L, Law M (1 January 2012). "Comparison of Next-Generation Sequencing Systems". Journal of Biomedicine and Biotechnology. 2012: 251364. doi:10.1155/2012/251364. PMC 3398667. PMID 22829749.
Rasko DA, Webster DR, Sahl JW, Bashir A, Boisen N, Scheutz F, Paxinos EE, Sebra R, Chin CS, Iliopoulos D, Klammer A, Peluso P, Lee L, Kislyuk AO, Bullard J, Kasarskis A, Wang S, Eid J, Rank D, Redman JC, Steyert SR, Frimodt-Møller J, Struve C, Petersen AM, Krogfelt KA, Nataro JP, Schadt EE, Waldor MK (25 August 2011). "Origins of the Strain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany". N Engl J Med. 365 (8): 709–17. doi:10.1056/NEJMoa1106920. PMC 3168948. PMID 21793740.
Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, Fomenkov A, Turner SW, Korlach J, Roberts RJ (2 October 2012). "The methylomes of six bacteria". Nucleic Acids Research. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Huang YF, Chen SC, Chiang YS, Chen TH, Chiu KP (2012). "Palindromic sequence impedes sequencing-by-ligation mechanism". BMC Systems Biology. 6 (Suppl 2): S10. doi:10.1186/1752-0509-6-S2-S10. PMC 3521181. PMID 23281822.
dela Torre R, Larkin J, Singer A, Meller A (2012). "Fabrication and characterization of solid-state nanopore arrays for high-throughput DNA sequencing". Nanotechnology. 23 (38): 385308. Bibcode:2012Nanot..23L5308D. doi:10.1088/0957-4484/23/38/385308. PMC 3557807. PMID 22948520.
Korlach J, Marks PJ, Cicero RL, Gray JJ, Murphy DL, Roitman DB, Pham TT, Otto GA, Foquet M, Turner SW (2008). "Selective aluminum passivation for targeted immobilization of single DNA polymerase molecules in zero-mode waveguide nanostructures". Proceedings of the National Academy of Sciences. 105 (4): 1176–81. Bibcode:2008PNAS..105.1176K. doi:10.1073/pnas.0710982105. PMC 2234111. PMID 18216253.
Bentley DR, Balasubramanian S, et al. (2008). "Accurate whole human genome sequencing using reversible terminator chemistry". Nature. 456 (7218): 53–59. Bibcode:2008Natur.456...53B. doi:10.1038/nature07517. PMC 2581791. PMID 18987734.
Huang J, Liang X, Xuan Y, Geng C, Li Y, Lu H, et al. (May 2017). "A reference human genome dataset of the BGISEQ-500 sequencer". GigaScience. 6 (5): 1–9. doi:10.1093/gigascience/gix024. PMC 5467036. PMID 28379488.
Valouev A, Ichikawa J, Tonthat T, Stuart J, Ranade S, Peckham H, Zeng K, Malek JA, Costa G, McKernan K, Sidow A, Fire A, Johnson SM (July 2008). "A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning". Genome Res. 18 (7): 1051–63. doi:10.1101/gr.076463.108. PMC 2493394. PMID 18477713.
Thompson JF, Steinmann KE (October 2010). "Single molecule sequencing with a HeliScope genetic analysis system". Current Protocols in Molecular Biology. Chapter 7: Unit7.10. doi:10.1002/0471142727.mb0710s92. PMC 2954431. PMID 20890904.
Heather, James M.; Chain, Benjamin (January 2016). "The sequence of sequencers: The history of sequencing DNA". Genomics. 107 (1): 1–8. doi:10.1016/j.ygeno.2015.11.003. PMC 4727787. PMID 26554401.
Boles DJ, Benton JL, Siew GJ, Levy MH, Thwar PK, Sandahl MA, et al. (November 2011). "Droplet-based pyrosequencing using digital microfluidics". Analytical Chemistry. 83 (22): 8439–47. doi:10.1021/ac201416j. PMC 3690483. PMID 21932784.
Ohshiro T, Matsubara K, Tsutsui M, Furuhashi M, Taniguchi M, Kawai T (2012). "Single-molecule electrical random resequencing of DNA and RNA". Sci Rep. 2: 501. Bibcode:2012NatSR...2..501O. doi:10.1038/srep00501. PMC 3392642. PMID 22787559.
Hanna GJ, Johnson VA, Kuritzkes DR, Richman DD, Martinez-Picado J, Sutton L, Hazelwood JD, D'Aquila RT (1 July 2000). "Comparison of Sequencing by Hybridization and Cycle Sequencing for Genotyping of Human Immunodeficiency Virus Type 1 Reverse Transcriptase". J. Clin. Microbiol. 38 (7): 2715–21. doi:10.1128/JCM.38.7.2715-2721.2000. PMC 87006. PMID 10878069.
Qin Y, Schneider TM, Brenner MP (2012). Gibas C (ed.). "Sequencing by Hybridization of Long Targets". PLOS ONE. 7 (5): e35819. Bibcode:2012PLoSO...735819Q. doi:10.1371/journal.pone.0035819. PMC 3344849. PMID 22574124.
Beres SB, Carroll RK, Shea PR, Sitkiewicz I, Martinez-Gutierrez JC, Low DE, McGeer A, Willey BM, Green K, Tyrrell GJ, Goldman TD, Feldgarden M, Birren BW, Fofanov Y, Boos J, Wheaton WD, Honisch C, Musser JM (8 February 2010). "Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics". Proceedings of the National Academy of Sciences. 107 (9): 4371–76. Bibcode:2010PNAS..107.4371B. doi:10.1073/pnas.0911295107. PMC 2840111. PMID 20142485.
Chen YJ, Roller EE, Huang X (2010). "DNA sequencing by denaturation: experimental proof of concept with an integrated fluidic device". Lab on a Chip. 10 (9): 1153–59. doi:10.1039/b921417h. PMC 2881221. PMID 20390134.
Pareek CS, Smoczynski R, Tretyn A (November 2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Pareek CS, Smoczynski R, Tretyn A (2011). "Sequencing technologies and genome sequencing". Journal of Applied Genetics. 52 (4): 413–35. doi:10.1007/s13353-011-0057-x. PMC 3189340. PMID 21698376.
Fujimori S, Hirai N, Ohashi H, Masuoka K, Nishikimi A, Fukui Y, Washio T, Oshikubo T, Yamashita T, Miyamoto-Sato E (2012). "Next-generation sequencing coupled with a cell-free display technology for high-throughput production of reliable interactome data". Scientific Reports. 2: 691. Bibcode:2012NatSR...2..691F. doi:10.1038/srep00691. PMC 3466446. PMID 23056904.
Alberti A, Belser C, Engelen S, Bertrand L, Orvain C, Brinas L, Cruaud C, et al. (2014). "Comparison of Library Preparation Methods Reveals Their Impact on Interpretation of Metatranscriptomic Data". BMC Genomics. 15 (1): 912–12. doi:10.1186/1471-2164-15-912. PMC 4213505. PMID 25331572.
Del Fabbro C, Scalabrin S, Morgante M, Giorgi FM (2013). "An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis". PLOS ONE. 8 (12): e85024. Bibcode:2013PLoSO...885024D. doi:10.1371/journal.pone.0085024. PMC 3871669. PMID 24376861.
Smeds L, Künstner A (19 October 2011). "ConDeTri--a content dependent read trimmer for Illumina data". PLOS ONE. 6 (10): e26314. Bibcode:2011PLoSO...626314S. doi:10.1371/journal.pone.0026314. PMC 3198461. PMID 22039460.
Schmieder R, Edwards R (March 2011). "Quality control and preprocessing of metagenomic datasets". Bioinformatics. 27 (6): 863–4. doi:10.1093/bioinformatics/btr026. PMC 3051327. PMID 21278185.
Bolger AM, Lohse M, Usadel B (August 2014). "Trimmomatic: a flexible trimmer for Illumina sequence data". Bioinformatics. 30 (15): 2114–20. doi:10.1093/bioinformatics/btu170. PMC 4103590. PMID 24695404.
Cox MP, Peterson DA, Biggs PJ (September 2010). "SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data". BMC Bioinformatics. 11 (1): 485. doi:10.1186/1471-2105-11-485. PMC 2956736. PMID 20875133.
Goldenberg AJ, Sharp RR (February 2012). "The ethical hazards and programmatic challenges of genomic newborn screening". JAMA. 307 (5): 461–2. doi:10.1001/jama.2012.68. PMC 3868436. PMID 22298675.
Bloss CS, Schork NJ, Topol EJ (February 2011). "Effect of direct-to-consumer genomewide profiling to assess disease risk". The New England Journal of Medicine. 364 (6): 524–34. doi:10.1056/NEJMoa1011893. PMC 3786730. PMID 21226570.
Sajeer P, Muhammad (4 May 2023). "Disruptive technology: Exploring the ethical, legal, political, and societal implications of nanopore sequencing technology". EMBO Reports. 24 (5): e56619. doi:10.15252/embr.202256619. PMC 10157308. PMID 36988424. S2CID 257803254.

nih.gov

"First complete sequence of a human genome". National Institutes of Health (NIH). 11 April 2022. Retrieved 6 February 2025.
"First complete sequence of a human genome". National Institutes of Health (NIH). 11 April 2022. Retrieved 6 February 2025.

pmc.ncbi.nlm.nih.gov

Heather JM, Chain B. The sequence of sequencers: The history of sequencing DNA. Genomics. 2016 Jan;107(1):1-8. doi: 10.1016/j.ygeno.2015.11.003. Epub 2015 Nov 10. PMID: 26554401; PMCID: PMC4727787.

nobelprize.org

Gilbert, W. DNA sequencing and gene structure. Nobel lecture, 8 December 1980.

nytimes.com

Harmon, Amy (24 February 2008). "Insurance Fears Lead Many to Shun DNA Tests". The New York Times. Retrieved 20 May 2015.

ox.ac.uk

innovation.ox.ac.uk

Mykrobe predictor –Antibiotic resistance prediction for S. aureus and M. tuberculosis from whole genome sequence data

pacb.com

"Direct detection and sequencing of damaged DNA bases". PacBio. Retrieved 31 July 2024.
"New Software, Polymerase for Sequel System Boost Throughput and Affordability – PacBio". 7 March 2018.

patentlens.net

Kawashima, Eric H.; Laurent Farinelli; Pascal Mayer (12 May 2005). "Patent: Method of nucleic acid amplification". Archived from the original on 22 February 2013. Retrieved 22 December 2012.

physorg.com

"Nanopore Sequencing Could Slash DNA Analysis Costs".

psu.edu

citeseerx.ist.psu.edu

Fair RB, Khlystov A, Tailor TD, Ivanov V, Evans RD, Srinivasan V, Pamula VK, Pollack MG, Griffin PB, Zhou J (January 2007). "Chemical and Biological Applications of Digital-Microfluidic Devices". IEEE Design & Test of Computers. 24 (1): 10–24. CiteSeerX 10.1.1.559.1440. doi:10.1109/MDT.2007.8. hdl:10161/6987. S2CID 10122940.

sandiegomics.com

"2022 Sequencing Market Share – Same as It Ever Was (For Now)". 25 June 2023.

sciencedirect.com

Sanger, F.; Coulson, A. R. (25 May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". Journal of Molecular Biology. 94 (3): 441–448. doi:10.1016/0022-2836(75)90213-2. ISSN 0022-2836. PMID 1100841.

semanticscholar.org

api.semanticscholar.org

Boycott, Kym M.; Vanstone, Megan R.; Bulman, Dennis E.; MacKenzie, Alex E. (October 2013). "Rare-disease genetics in the era of next-generation sequencing: discovery to translation". Nature Reviews Genetics. 14 (10): 681–691. doi:10.1038/nrg3555. PMID 23999272. S2CID 8496181.
Czernecki, Dariusz; Bonhomme, Frédéric; Kaminski, Pierre-Alexandre; Delarue, Marc (5 August 2021). "Characterization of a triad of genes in cyanophage S-2L sufficient to replace adenine by 2-aminoadenine in bacterial DNA". Nature Communications. 12 (1): 4710. Bibcode:2021NatCo..12.4710C. doi:10.1038/s41467-021-25064-x. PMC 8342488. PMID 34354070. S2CID 233745192.
Min Jou W, Haegeman G, Ysebaert M, Fiers W (May 1972). "Nucleotide sequence of the gene coding for the bacteriophage MS2 coat protein". Nature. 237 (5350): 82–8. Bibcode:1972Natur.237...82J. doi:10.1038/237082a0. PMID 4555447. S2CID 4153893.
Fiers W, Contreras R, Duerinck F, Haegeman G, Iserentant D, Merregaert J, Min Jou W, Molemans F, Raeymaekers A, Van den Berghe A, Volckaert G, Ysebaert M (April 1976). "Complete nucleotide sequence of bacteriophage MS2 RNA: primary and secondary structure of the replicase gene". Nature. 260 (5551): 500–7. Bibcode:1976Natur.260..500F. doi:10.1038/260500a0. PMID 1264203. S2CID 4289674.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, Hutchison CA, Slocombe PM, Smith M (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Smith LM, Sanders JZ, Kaiser RJ, Hughes P, Dodd C, Connell CR, Heiner C, Kent SB, Hood LE (12 June 1986). "Fluorescence Detection in Automated DNA Sequence Analysis". Nature. 321 (6071): 674–79. Bibcode:1986Natur.321..674S. doi:10.1038/321674a0. PMID 3713851. S2CID 27800972.
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF (June 1991). "Complementary DNA sequencing: expressed sequence tags and human genome project". Science. 252 (5013): 1651–56. Bibcode:1991Sci...252.1651A. doi:10.1126/science.2047873. PMID 2047873. S2CID 13436211.
Brenner S, Johnson M, Bridgham J, Golda G, Lloyd DH, Johnson D, Luo S, McCurdy S, Foy M, Ewan M, Roth R, George D, Eletr S, Albrecht G, Vermaas E, Williams SR, Moon K, Burcham T, Pallas M, DuBridge RB, Kirchner J, Fearon K, Mao J, Corcoran K (2000). "Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays". Nature Biotechnology. 18 (6): 630–34. doi:10.1038/76469. PMID 10835600. S2CID 13884154.
Ronaghi, Mostafa; Uhlén, Mathias; Nyrén, Pål (17 July 1998). "A Sequencing Method Based on Real-Time Pyrophosphate". Science. 281 (5375): 363–365. doi:10.1126/science.281.5375.363. PMID 9705713. S2CID 26331871.
Quail MA, Gu Y, Swerdlow H, Mayho M (2012). "Evaluation and optimisation of preparative semi-automated electrophoresis systems for Illumina library preparation". Electrophoresis. 33 (23): 3521–28. doi:10.1002/elps.201200128. PMID 23147856. S2CID 39818212.
Williams R, Peisajovich SG, Miller OJ, Magdassi S, Tawfik DS, Griffiths AD (2006). "Amplification of complex gene libraries by emulsion PCR". Nature Methods. 3 (7): 545–50. doi:10.1038/nmeth896. PMID 16791213. S2CID 27459628.
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (2005). "Accurate Multiplex Polony Sequencing of an Evolved Bacterial Genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Goodwin S, McPherson JD, McCombie WR (May 2016). "Coming of age: ten years of next-generation sequencing technologies". Nature Reviews Genetics. 17 (6): 333–51. doi:10.1038/nrg.2016.49. PMC 10373632. PMID 27184599. S2CID 8295541.
Church GM (January 2006). "Genomes for all". Sci. Am. 294 (1): 46–54. Bibcode:2006SciAm.294a..46C. doi:10.1038/scientificamerican0106-46. PMID 16468433. S2CID 28769137.(subscription required)
Schuster SC (January 2008). "Next-generation sequencing transforms today's biology". Nat. Methods. 5 (1): 16–18. doi:10.1038/nmeth1156. PMID 18165802. S2CID 1465786.
Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J (2013). "Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data". Nat. Methods. 10 (6): 563–69. doi:10.1038/nmeth.2474. PMID 23644548. S2CID 205421576.
Tran B, Brown AM, Bedard PL, Winquist E, Goss GD, Hotte SJ, Welch SA, Hirte HW, Zhang T, Stein LD, Ferretti V, Watt S, Jiao W, Ng K, Ghai S, Shaw P, Petrocelli T, Hudson TJ, Neel BG, Onetto N, Siu LL, McPherson JD, Kamel-Reid S, Dancey JE (1 January 2012). "Feasibility of real time next generation sequencing of cancer genes linked to drug response: Results from a clinical trial". Int. J. Cancer. 132 (7): 1547–55. doi:10.1002/ijc.27817. PMID 22948899. S2CID 72705.(subscription required)
Shendure J, Porreca GJ, Reppas NB, Lin X, McCutcheon JP, Rosenbaum AM, Wang MD, Zhang K, Mitra RD, Church GM (9 September 2005). "Accurate multiplex polony sequencing of an evolved bacterial genome". Science. 309 (5741): 1728–32. Bibcode:2005Sci...309.1728S. doi:10.1126/science.1117389. PMID 16081699. S2CID 11405973.
Drmanac R, Sparks AB, Callow MJ, Halpern AL, Burns NL, Kermani BG, et al. (January 2010). "Human genome sequencing using unchained base reads on self-assembling DNA nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Rusk N (2011). "Torrents of sequence". Nat Methods. 8 (1): 44. doi:10.1038/nmeth.f.330. S2CID 41040192.
Drmanac R, Sparks AB, et al. (2010). "Human Genome Sequencing Using Unchained Base Reads in Self-Assembling DNA Nanoarrays". Science. 327 (5961): 78–81. Bibcode:2010Sci...327...78D. doi:10.1126/science.1181498. PMID 19892942. S2CID 17309571.
Porreca GJ (2010). "Genome Sequencing on Nanoballs". Nature Biotechnology. 28 (1): 43–44. doi:10.1038/nbt0110-43. PMID 20062041. S2CID 54557996.
Fair RB, Khlystov A, Tailor TD, Ivanov V, Evans RD, Srinivasan V, Pamula VK, Pollack MG, Griffin PB, Zhou J (January 2007). "Chemical and Biological Applications of Digital-Microfluidic Devices". IEEE Design & Test of Computers. 24 (1): 10–24. CiteSeerX 10.1.1.559.1440. doi:10.1109/MDT.2007.8. hdl:10161/6987. S2CID 10122940.
Zilionis R, Nainys J, Veres A, Savova V, Zemmour D, Klein AM, Mazutis L (January 2017). "Single-cell barcoding and sequencing using droplet microfluidics". Nature Protocols. 12 (1): 44–73. doi:10.1038/nprot.2016.154. PMID 27929523. S2CID 767782.
Di Ventra M (2013). "Fast DNA sequencing by electrical means inches closer". Nanotechnology. 24 (34): 342501. Bibcode:2013Nanot..24H2501D. doi:10.1088/0957-4484/24/34/342501. PMID 23899780. S2CID 140101884.
Monforte JA, Becker CH (1 March 1997). "High-throughput DNA analysis by time-of-flight mass spectrometry". Nature Medicine. 3 (3): 360–62. doi:10.1038/nm0397-360. PMID 9055869. S2CID 28386145.
Kan CW, Fredlake CP, Doherty EA, Barron AE (1 November 2004). "DNA sequencing and genotyping in miniaturized electrophoresis systems". Electrophoresis. 25 (21–22): 3564–88. doi:10.1002/elps.200406161. PMID 15565709. S2CID 4851728.
Bell DC, Thomas WK, Murtagh KM, Dionne CA, Graham AC, Anderson JE, Glover WR (9 October 2012). "DNA Base Identification by Electron Microscopy". Microscopy and Microanalysis. 18 (5): 1049–53. Bibcode:2012MiMic..18.1049B. doi:10.1017/S1431927612012615. PMID 23046798. S2CID 25713635.
Severin J, Lizio M, Harshbarger J, Kawaji H, Daub CO, Hayashizaki Y, Bertin N, Forrest AR (2014). "Interactive visualization and analysis of large-scale sequencing datasets using ZENBU". Nat. Biotechnol. 32 (3): 217–19. doi:10.1038/nbt.2840. PMID 24727769. S2CID 26575621.
Shmilovici A, Ben-Gal I (2007). "Using a VOM model for reconstructing potential coding regions in EST sequences" (PDF). Computational Statistics. 22 (1): 49–69. doi:10.1007/s00180-007-0021-8. S2CID 2737235. Archived from the original (PDF) on 31 May 2020. Retrieved 10 January 2014.
Prezza N, Del Fabbro C, Vezzi F, De Paoli E, Policriti A (2012). "Erne-Bs5". Proceedings of the ACM Conference on Bioinformatics, Computational Biology and Biomedicine. Vol. 12. pp. 12–19. doi:10.1145/2382936.2382938. ISBN 9781450316705. S2CID 5673753.
Murray TH (January 1991). "Ethical issues in human genome research". FASEB Journal. 5 (1): 55–60. doi:10.1096/fasebj.5.1.1825074. PMID 1825074. S2CID 20009748.
Robertson JA (August 2003). "The $1000 genome: ethical and legal issues in whole genome sequencing of individuals". The American Journal of Bioethics. 3 (3): W–IF1. doi:10.1162/152651603322874762. PMID 14735880. S2CID 15357657.
Sajeer P, Muhammad (4 May 2023). "Disruptive technology: Exploring the ethical, legal, political, and societal implications of nanopore sequencing technology". EMBO Reports. 24 (5): e56619. doi:10.15252/embr.202256619. PMC 10157308. PMID 36988424. S2CID 257803254.

seqll.com

"tSMS SeqLL Technical Explanation". SeqLL. Archived from the original on 8 August 2014. Retrieved 9 August 2015.

slate.com

Hughes, Virginia (7 January 2013). "It's Time To Stop Obsessing About the Dangers of Genetic Information". Slate Magazine. Retrieved 22 May 2015.

tau.ac.il

eng.tau.ac.il

Shmilovici A, Ben-Gal I (2007). "Using a VOM model for reconstructing potential coding regions in EST sequences" (PDF). Computational Statistics. 22 (1): 49–69. doi:10.1007/s00180-007-0021-8. S2CID 2737235. Archived from the original (PDF) on 31 May 2020. Retrieved 10 January 2014.

theconversation.com

"Introducing 'dark DNA' – the phenomenon that could change how we think about evolution". 24 August 2017.
Curtis C, Hereward J (29 August 2017). "From the crime scene to the courtroom: the journey of a DNA sample". The Conversation.
Hartley, Gabrielle (31 March 2022). "The Human Genome Project pieced together only 92% of the DNA – now scientists have finally filled in the remaining 8%". The Conversation. Retrieved 6 February 2025.

theguardian.com

Henderson, Mark (9 September 2013). "Human genome sequencing: the real ethical dilemmas". The Guardian. Retrieved 20 May 2015.

thermofisher.com

"Ion 520 & Ion 530 ExT Kit-Chef – Thermo Fisher Scientific". thermofisher.com.

time.com

healthland.time.com

Rochman, Bonnie (25 October 2012). "What Your Doctor Isn't Telling You About Your DNA". Time. Retrieved 22 May 2015.

tvo.org

"Michael Mosley vs the superbugs". Archived from the original on 24 November 2020. Retrieved 21 October 2019.

umich.edu

deepblue.lib.umich.edu

Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (February 2001). "Initial sequencing and analysis of the human genome" (PDF). Nature. 409 (6822): 860–921. Bibcode:2001Natur.409..860L. doi:10.1038/35057062. PMID 11237011.

web.archive.org

"Michael Mosley vs the superbugs". Archived from the original on 24 November 2020. Retrieved 21 October 2019.
"Ray Wu Faculty Profile". Cornell University. Archived from the original on 4 March 2009.
"Applied Biosystems – File Not Found (404 Error)". 16 May 2008. Archived from the original on 16 May 2008.
"Raw accuracy". Archived from the original on 30 March 2018. Retrieved 29 March 2018.
"Bio-IT World". bio-itworld.com. Archived from the original on 29 July 2020. Retrieved 16 November 2015.
"HeliScope Gene Sequencing / Genetic Analyzer System : Helicos BioSciences". 2 November 2009. Archived from the original on 2 November 2009.
"tSMS SeqLL Technical Explanation". SeqLL. Archived from the original on 8 August 2014. Retrieved 9 August 2015.
"The Harvard Nanopore Group". Mcb.harvard.edu. Archived from the original on 21 February 2002. Retrieved 15 November 2009.
"Archon Genomics XPRIZE". Archon Genomics XPRIZE. Archived from the original on 17 June 2013. Retrieved 9 August 2007.
Shmilovici A, Ben-Gal I (2007). "Using a VOM model for reconstructing potential coding regions in EST sequences" (PDF). Computational Statistics. 22 (1): 49–69. doi:10.1007/s00180-007-0021-8. S2CID 2737235. Archived from the original (PDF) on 31 May 2020. Retrieved 10 January 2014.
"Privacy and Progress in Whole Genome Sequencing" (PDF). Presidential Commission for the Study of Bioethical Issues. Archived from the original (PDF) on 12 June 2015. Retrieved 20 May 2015.

whatisbiotechnology.org

Marks, L. "The path to DNA sequencing: The life and work of Frederick Sanger". What is Biotechnology?. Retrieved 27 June 2023.
Marks, L. "The next frontier: Human viruses". What is Biotechnology?. Retrieved 27 June 2023.

worldcat.org

search.worldcat.org

Bean, Lora; Funke, Birgit; Carlston, Colleen M.; Gannon, Jennifer L.; Kantarci, Sibel; Krock, Bryan L.; Zhang, Shulin; Bayrak-Toydemir, Pinar (March 2020). "Diagnostic gene sequencing panels: from design to report—a technical standard of the American College of Medical Genetics and Genomics (ACMG)". Genetics in Medicine. 22 (3): 453–461. doi:10.1038/s41436-019-0666-z. ISSN 1098-3600. PMID 31732716.
Sanger, F.; Coulson, A. R. (25 May 1975). "A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase". Journal of Molecular Biology. 94 (3): 441–448. doi:10.1016/0022-2836(75)90213-2. ISSN 0022-2836. PMID 1100841.

wou.edu

"Chapter 5: Investigating DNA". Chemistry. Retrieved 31 January 2025.

xprize.org

genomics.xprize.org

"Archon Genomics XPRIZE". Archon Genomics XPRIZE. Archived from the original on 17 June 2013. Retrieved 9 August 2007.

zenodo.org

Pathak B, Lofas H, Prasongkit J, Grigoriev A, Ahuja R, Scheicher RH (2012). "Double-functionalized nanopore-embedded gold electrodes for rapid DNA sequencing". Applied Physics Letters. 100 (2): 023701. Bibcode:2012ApPhL.100b3701P. doi:10.1063/1.3673335.
Di Ventra M (2013). "Fast DNA sequencing by electrical means inches closer". Nanotechnology. 24 (34): 342501. Bibcode:2013Nanot..24H2501D. doi:10.1088/0957-4484/24/34/342501. PMID 23899780. S2CID 140101884.