Epigenomics (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Epigenomics" in English language version.

refsWebsite

Global rank English rank

60nih.gov

4^th place

38doi.org

2^nd place

11semanticscholar.org

11^th place

8^th place

7harvard.edu

18^th place

17^th place

2arxiv.org

69^th place

59^th place

1ku.dk

5,396^th place

4,339^th place

1whatisepigenetics.com

low place

1rug.nl

2,779^th place

1,997^th place

1handle.net

102^nd place

76^th place

1biorxiv.org

5,061^st place

5,698^th place

arxiv.org

Sedighi M, Sengupta AM (November 2007). "Epigenetic chromatin silencing: bistability and front propagation". Physical Biology. 4 (4): 246–55. arXiv:0710.3889. Bibcode:2007PhBio...4..246S. doi:10.1088/1478-3975/4/4/002. PMC 2267688. PMID 17991991.
Teif VB, Rippe K (October 2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.

biorxiv.org

Simpson JT, Workman RE, Zuzarte PC, David M, Dursi LJ, Timp W (April 2017). "Detecting DNA cytosine methylation using nanopore sequencing" (PDF). Nature Methods. 14 (4): 407–410. doi:10.1038/nmeth.4184. PMID 28218898. S2CID 16152628.

doi.org

Alabert C, Groth A (February 2012). "Chromatin replication and epigenome maintenance" (PDF). Nature Reviews. Molecular Cell Biology. 13 (3): 153–67. doi:10.1038/nrm3288. PMID 22358331. S2CID 10911203.
Ghosh S, Sinha JK, Raghunath M (September 2016). "Epigenomic maintenance through dietary intervention can facilitate DNA repair process to slow down the progress of premature aging". IUBMB Life. 68 (9): 717–21. doi:10.1002/iub.1532. PMID 27364681.
Zhu J, Adli M, Zou JY, Verstappen G, Coyne M, Zhang X, et al. (January 2013). "Genome-wide chromatin state transitions associated with developmental and environmental cues". Cell. 152 (3): 642–54. doi:10.1016/j.cell.2012.12.033. PMC 3563935. PMID 23333102.
Laird PW (March 2010). "Principles and challenges of genomewide DNA methylation analysis". Nature Reviews. Genetics. 11 (3): 191–203. doi:10.1038/nrg2732. PMID 20125086. S2CID 6780101.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes & Development. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, et al. (May 2007). "High-resolution profiling of histone methylations in the human genome". Cell. 129 (4): 823–37. doi:10.1016/j.cell.2007.05.009. PMID 17512414. S2CID 6326093.
Kouzarides T (February 2007). "Chromatin modifications and their function". Cell. 128 (4): 693–705. doi:10.1016/j.cell.2007.02.005. PMID 17320507. S2CID 11691263.
Gross DS, Garrard WT (1988). "Nuclease hypersensitive sites in chromatin". Annual Review of Biochemistry. 57: 159–97. doi:10.1146/annurev.bi.57.070188.001111. PMID 3052270.
Eads CA, Danenberg KD, Kawakami K, Saltz LB, Blake C, Shibata D, et al. (April 2000). "MethyLight: a high-throughput assay to measure DNA methylation". Nucleic Acids Research. 28 (8): 32e–0. doi:10.1093/nar/28.8.e32. PMC 102836. PMID 10734209.
van der Ploeg LH, Flavell RA (April 1980). "DNA methylation in the human gamma delta beta-globin locus in erythroid and nonerythroid tissues". Cell. 19 (4): 947–58. doi:10.1016/0092-8674(80)90086-0. PMID 6247075. S2CID 54324289.
Johannes F, Colot V, Jansen RC (November 2008). "Epigenome dynamics: a quantitative genetics perspective" (PDF). Nature Reviews. Genetics. 9 (11): 883–90. doi:10.1038/nrg2467. hdl:11370/731f6c62-6749-4e67-aa72-c2242f95527a. PMID 18927581. S2CID 7641577.
Trucchi E, Mazzarella AB, Gilfillan GD, Lorenzo MT, Schönswetter P, Paun O (April 2016). "BsRADseq: screening DNA methylation in natural populations of non-model species". Molecular Ecology. 25 (8): 1697–1713. doi:10.1111/mec.13550. PMC 4949719. PMID 26818626.
van Gurp TP, Wagemaker NC, Wouters B, Vergeer P, Ouborg JN, Verhoeven KJ (April 2016). "epiGBS: reference-free reduced representation bisulfite sequencing". Nature Methods. 13 (4): 322–324. doi:10.1038/nmeth.3763. PMID 26855363. S2CID 10457615.
Paun O, Verhoeven KJ, Richards CL (January 2019). "Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics". The New Phytologist. 221 (2): 738–742. doi:10.1111/nph.15388. PMC 6504643. PMID 30121954.
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, et al. (February 2015). "Integrative analysis of 111 reference human epigenomes". Nature. 518 (7539): 317–30. Bibcode:2015Natur.518..317.. doi:10.1038/nature14248. PMC 4530010. PMID 25693563.
Pennacchio LA, Bickmore W, Dean A, Nobrega MA, Bejerano G (April 2013). "Enhancers: five essential questions". Nature Reviews. Genetics. 14 (4): 288–95. doi:10.1038/nrg3458. PMC 4445073. PMID 23503198.
Zhang Z, Pugh BF (January 2011). "High-resolution genome-wide mapping of the primary structure of chromatin". Cell. 144 (2): 175–86. doi:10.1016/j.cell.2011.01.003. PMC 3061432. PMID 21241889.
Axel R (July 1975). "Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease". Biochemistry. 14 (13): 2921–5. doi:10.1021/bi00684a020. PMID 1148185.
Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, et al. (October 2017). "Genome-wide prediction of DNase I hypersensitivity using gene expression". Nature Communications. 8 (1): 1038. Bibcode:2017NatCo...8.1038Z. doi:10.1038/s41467-017-01188-x. PMC 5715040. PMID 29051481.
Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, et al. (ENCODE Project Consortium) (September 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature. 489 (7414): 57–74. Bibcode:2012Natur.489...57T. doi:10.1038/nature11247. PMC 3439153. PMID 22955616.
He HH, Meyer CA, Hu SS, Chen MW, Zang C, Liu Y, et al. (January 2014). "Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification". Nature Methods. 11 (1): 73–78. doi:10.1038/nmeth.2762. PMC 18771. PMID 24317252.
Tsompana M, Buck MJ (20 November 2014). "Chromatin accessibility: a window into the genome". Epigenetics & Chromatin. 7 (1): 33. doi:10.1186/1756-8935-7-33. PMC 4253006. PMID 25473421.
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD (June 2007). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–85. doi:10.1101/gr.5533506. PMC 1891346. PMID 17179217.
Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ (December 2013). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–8. doi:10.1038/nmeth.2688. PMC 3959825. PMID 24097267.
Schadt EE, Banerjee O, Fang G, Feng Z, Wong WH, Zhang X, et al. (January 2013). "Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases". Genome Research. 23 (1): 129–41. doi:10.1101/gr.136739.111. PMC 3530673. PMID 23093720.
Davis BM, Chao MC, Waldor MK (April 2013). "Entering the era of bacterial epigenomics with single molecule real time DNA sequencing". Current Opinion in Microbiology. 16 (2): 192–8. doi:10.1016/j.mib.2013.01.011. PMC 3646917. PMID 23434113.
Lluch-Senar M, Luong K, Lloréns-Rico V, Delgado J, Fang G, Spittle K, et al. (2013). "Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution". PLOS Genetics. 9 (1): e1003191. doi:10.1371/journal.pgen.1003191. PMC 3536716. PMID 23300489.
Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, et al. (December 2012). "The methylomes of six bacteria". Nucleic Acids Research. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, et al. (December 2012). "Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing". Nature Biotechnology. 30 (12): 1232–9. doi:10.1038/nbt.2432. PMC 3879109. PMID 23138224.
Simpson JT, Workman RE, Zuzarte PC, David M, Dursi LJ, Timp W (April 2017). "Detecting DNA cytosine methylation using nanopore sequencing" (PDF). Nature Methods. 14 (4): 407–410. doi:10.1038/nmeth.4184. PMID 28218898. S2CID 16152628.
Laszlo AH, Derrington IM, Brinkerhoff H, Langford KW, Nova IC, Samson JM, et al. (November 2013). "Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): 18904–9. Bibcode:2013PNAS..11018904L. doi:10.1073/pnas.1310240110. PMC 3839702. PMID 24167255.
Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, et al. (April 2018). "Nanopore sequencing and assembly of a human genome with ultra-long reads". Nature Biotechnology. 36 (4): 338–345. doi:10.1038/nbt.4060. PMC 5889714. PMID 29431738.
Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, Clark TA, et al. (June 2010). "Direct detection of DNA methylation during single-molecule, real-time sequencing". Nature Methods. 7 (6): 461–5. doi:10.1038/nmeth.1459. PMC 2879396. PMID 20453866.
Yang Y, Scott SA (2017). "DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS)". Functional Genomics. Methods in Molecular Biology. Vol. 1654. pp. 125–134. doi:10.1007/978-1-4939-7231-9_8. ISBN 978-1-4939-7230-2. PMID 28986786.
Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Sedighi M, Sengupta AM (November 2007). "Epigenetic chromatin silencing: bistability and front propagation". Physical Biology. 4 (4): 246–55. arXiv:0710.3889. Bibcode:2007PhBio...4..246S. doi:10.1088/1478-3975/4/4/002. PMC 2267688. PMID 17991991.
Dodd IB, Micheelsen MA, Sneppen K, Thon G (May 2007). "Theoretical analysis of epigenetic cell memory by nucleosome modification". Cell. 129 (4): 813–22. doi:10.1016/j.cell.2007.02.053. PMID 17512413. S2CID 16091877.
Teif VB, Rippe K (October 2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.

handle.net

hdl.handle.net

Johannes F, Colot V, Jansen RC (November 2008). "Epigenome dynamics: a quantitative genetics perspective" (PDF). Nature Reviews. Genetics. 9 (11): 883–90. doi:10.1038/nrg2467. hdl:11370/731f6c62-6749-4e67-aa72-c2242f95527a. PMID 18927581. S2CID 7641577.

harvard.edu

ui.adsabs.harvard.edu

Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, et al. (February 2015). "Integrative analysis of 111 reference human epigenomes". Nature. 518 (7539): 317–30. Bibcode:2015Natur.518..317.. doi:10.1038/nature14248. PMC 4530010. PMID 25693563.
Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, et al. (October 2017). "Genome-wide prediction of DNase I hypersensitivity using gene expression". Nature Communications. 8 (1): 1038. Bibcode:2017NatCo...8.1038Z. doi:10.1038/s41467-017-01188-x. PMC 5715040. PMID 29051481.
Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, et al. (ENCODE Project Consortium) (September 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature. 489 (7414): 57–74. Bibcode:2012Natur.489...57T. doi:10.1038/nature11247. PMC 3439153. PMID 22955616.
Laszlo AH, Derrington IM, Brinkerhoff H, Langford KW, Nova IC, Samson JM, et al. (November 2013). "Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): 18904–9. Bibcode:2013PNAS..11018904L. doi:10.1073/pnas.1310240110. PMC 3839702. PMID 24167255.
Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Sedighi M, Sengupta AM (November 2007). "Epigenetic chromatin silencing: bistability and front propagation". Physical Biology. 4 (4): 246–55. arXiv:0710.3889. Bibcode:2007PhBio...4..246S. doi:10.1088/1478-3975/4/4/002. PMC 2267688. PMID 17991991.
Teif VB, Rippe K (October 2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.

ku.dk

curis.ku.dk

Alabert C, Groth A (February 2012). "Chromatin replication and epigenome maintenance" (PDF). Nature Reviews. Molecular Cell Biology. 13 (3): 153–67. doi:10.1038/nrm3288. PMID 22358331. S2CID 10911203.

nih.gov

pubmed.ncbi.nlm.nih.gov

Alabert C, Groth A (February 2012). "Chromatin replication and epigenome maintenance" (PDF). Nature Reviews. Molecular Cell Biology. 13 (3): 153–67. doi:10.1038/nrm3288. PMID 22358331. S2CID 10911203.
Ghosh S, Sinha JK, Raghunath M (September 2016). "Epigenomic maintenance through dietary intervention can facilitate DNA repair process to slow down the progress of premature aging". IUBMB Life. 68 (9): 717–21. doi:10.1002/iub.1532. PMID 27364681.
Zhu J, Adli M, Zou JY, Verstappen G, Coyne M, Zhang X, et al. (January 2013). "Genome-wide chromatin state transitions associated with developmental and environmental cues". Cell. 152 (3): 642–54. doi:10.1016/j.cell.2012.12.033. PMC 3563935. PMID 23333102.
Laird PW (March 2010). "Principles and challenges of genomewide DNA methylation analysis". Nature Reviews. Genetics. 11 (3): 191–203. doi:10.1038/nrg2732. PMID 20125086. S2CID 6780101.
Bird A (January 2002). "DNA methylation patterns and epigenetic memory". Genes & Development. 16 (1): 6–21. doi:10.1101/gad.947102. PMID 11782440.
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, et al. (May 2007). "High-resolution profiling of histone methylations in the human genome". Cell. 129 (4): 823–37. doi:10.1016/j.cell.2007.05.009. PMID 17512414. S2CID 6326093.
Kouzarides T (February 2007). "Chromatin modifications and their function". Cell. 128 (4): 693–705. doi:10.1016/j.cell.2007.02.005. PMID 17320507. S2CID 11691263.
Gross DS, Garrard WT (1988). "Nuclease hypersensitive sites in chromatin". Annual Review of Biochemistry. 57: 159–97. doi:10.1146/annurev.bi.57.070188.001111. PMID 3052270.
Eads CA, Danenberg KD, Kawakami K, Saltz LB, Blake C, Shibata D, et al. (April 2000). "MethyLight: a high-throughput assay to measure DNA methylation". Nucleic Acids Research. 28 (8): 32e–0. doi:10.1093/nar/28.8.e32. PMC 102836. PMID 10734209.
van der Ploeg LH, Flavell RA (April 1980). "DNA methylation in the human gamma delta beta-globin locus in erythroid and nonerythroid tissues". Cell. 19 (4): 947–58. doi:10.1016/0092-8674(80)90086-0. PMID 6247075. S2CID 54324289.
Johannes F, Colot V, Jansen RC (November 2008). "Epigenome dynamics: a quantitative genetics perspective" (PDF). Nature Reviews. Genetics. 9 (11): 883–90. doi:10.1038/nrg2467. hdl:11370/731f6c62-6749-4e67-aa72-c2242f95527a. PMID 18927581. S2CID 7641577.
Trucchi E, Mazzarella AB, Gilfillan GD, Lorenzo MT, Schönswetter P, Paun O (April 2016). "BsRADseq: screening DNA methylation in natural populations of non-model species". Molecular Ecology. 25 (8): 1697–1713. doi:10.1111/mec.13550. PMC 4949719. PMID 26818626.
van Gurp TP, Wagemaker NC, Wouters B, Vergeer P, Ouborg JN, Verhoeven KJ (April 2016). "epiGBS: reference-free reduced representation bisulfite sequencing". Nature Methods. 13 (4): 322–324. doi:10.1038/nmeth.3763. PMID 26855363. S2CID 10457615.
Paun O, Verhoeven KJ, Richards CL (January 2019). "Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics". The New Phytologist. 221 (2): 738–742. doi:10.1111/nph.15388. PMC 6504643. PMID 30121954.
Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, et al. (February 2015). "Integrative analysis of 111 reference human epigenomes". Nature. 518 (7539): 317–30. Bibcode:2015Natur.518..317.. doi:10.1038/nature14248. PMC 4530010. PMID 25693563.
Pennacchio LA, Bickmore W, Dean A, Nobrega MA, Bejerano G (April 2013). "Enhancers: five essential questions". Nature Reviews. Genetics. 14 (4): 288–95. doi:10.1038/nrg3458. PMC 4445073. PMID 23503198.
Zhang Z, Pugh BF (January 2011). "High-resolution genome-wide mapping of the primary structure of chromatin". Cell. 144 (2): 175–86. doi:10.1016/j.cell.2011.01.003. PMC 3061432. PMID 21241889.
Axel R (July 1975). "Cleavage of DNA in nuclei and chromatin with staphylococcal nuclease". Biochemistry. 14 (13): 2921–5. doi:10.1021/bi00684a020. PMID 1148185.
Zhou W, Sherwood B, Ji Z, Xue Y, Du F, Bai J, et al. (October 2017). "Genome-wide prediction of DNase I hypersensitivity using gene expression". Nature Communications. 8 (1): 1038. Bibcode:2017NatCo...8.1038Z. doi:10.1038/s41467-017-01188-x. PMC 5715040. PMID 29051481.
Aldred SF, Collins PJ, Davis CA, Doyle F, Epstein CB, Frietze S, et al. (ENCODE Project Consortium) (September 2012). "An integrated encyclopedia of DNA elements in the human genome". Nature. 489 (7414): 57–74. Bibcode:2012Natur.489...57T. doi:10.1038/nature11247. PMC 3439153. PMID 22955616.
He HH, Meyer CA, Hu SS, Chen MW, Zang C, Liu Y, et al. (January 2014). "Refined DNase-seq protocol and data analysis reveals intrinsic bias in transcription factor footprint identification". Nature Methods. 11 (1): 73–78. doi:10.1038/nmeth.2762. PMC 18771. PMID 24317252.
Tsompana M, Buck MJ (20 November 2014). "Chromatin accessibility: a window into the genome". Epigenetics & Chromatin. 7 (1): 33. doi:10.1186/1756-8935-7-33. PMC 4253006. PMID 25473421.
Giresi PG, Kim J, McDaniell RM, Iyer VR, Lieb JD (June 2007). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–85. doi:10.1101/gr.5533506. PMC 1891346. PMID 17179217.
Buenrostro JD, Giresi PG, Zaba LC, Chang HY, Greenleaf WJ (December 2013). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–8. doi:10.1038/nmeth.2688. PMC 3959825. PMID 24097267.
Schadt EE, Banerjee O, Fang G, Feng Z, Wong WH, Zhang X, et al. (January 2013). "Modeling kinetic rate variation in third generation DNA sequencing data to detect putative modifications to DNA bases". Genome Research. 23 (1): 129–41. doi:10.1101/gr.136739.111. PMC 3530673. PMID 23093720.
Davis BM, Chao MC, Waldor MK (April 2013). "Entering the era of bacterial epigenomics with single molecule real time DNA sequencing". Current Opinion in Microbiology. 16 (2): 192–8. doi:10.1016/j.mib.2013.01.011. PMC 3646917. PMID 23434113.
Lluch-Senar M, Luong K, Lloréns-Rico V, Delgado J, Fang G, Spittle K, et al. (2013). "Comprehensive methylome characterization of Mycoplasma genitalium and Mycoplasma pneumoniae at single-base resolution". PLOS Genetics. 9 (1): e1003191. doi:10.1371/journal.pgen.1003191. PMC 3536716. PMID 23300489.
Murray IA, Clark TA, Morgan RD, Boitano M, Anton BP, Luong K, et al. (December 2012). "The methylomes of six bacteria". Nucleic Acids Research. 40 (22): 11450–62. doi:10.1093/nar/gks891. PMC 3526280. PMID 23034806.
Fang G, Munera D, Friedman DI, Mandlik A, Chao MC, Banerjee O, et al. (December 2012). "Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing". Nature Biotechnology. 30 (12): 1232–9. doi:10.1038/nbt.2432. PMC 3879109. PMID 23138224.
Simpson JT, Workman RE, Zuzarte PC, David M, Dursi LJ, Timp W (April 2017). "Detecting DNA cytosine methylation using nanopore sequencing" (PDF). Nature Methods. 14 (4): 407–410. doi:10.1038/nmeth.4184. PMID 28218898. S2CID 16152628.
Laszlo AH, Derrington IM, Brinkerhoff H, Langford KW, Nova IC, Samson JM, et al. (November 2013). "Detection and mapping of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore MspA". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): 18904–9. Bibcode:2013PNAS..11018904L. doi:10.1073/pnas.1310240110. PMC 3839702. PMID 24167255.
Jain M, Koren S, Miga KH, Quick J, Rand AC, Sasani TA, et al. (April 2018). "Nanopore sequencing and assembly of a human genome with ultra-long reads". Nature Biotechnology. 36 (4): 338–345. doi:10.1038/nbt.4060. PMC 5889714. PMID 29431738.
Flusberg BA, Webster DR, Lee JH, Travers KJ, Olivares EC, Clark TA, et al. (June 2010). "Direct detection of DNA methylation during single-molecule, real-time sequencing". Nature Methods. 7 (6): 461–5. doi:10.1038/nmeth.1459. PMC 2879396. PMID 20453866.
Yang Y, Scott SA (2017). "DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS)". Functional Genomics. Methods in Molecular Biology. Vol. 1654. pp. 125–134. doi:10.1007/978-1-4939-7231-9_8. ISBN 978-1-4939-7230-2. PMID 28986786.
Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Sedighi M, Sengupta AM (November 2007). "Epigenetic chromatin silencing: bistability and front propagation". Physical Biology. 4 (4): 246–55. arXiv:0710.3889. Bibcode:2007PhBio...4..246S. doi:10.1088/1478-3975/4/4/002. PMC 2267688. PMID 17991991.
Dodd IB, Micheelsen MA, Sneppen K, Thon G (May 2007). "Theoretical analysis of epigenetic cell memory by nucleosome modification". Cell. 129 (4): 813–22. doi:10.1016/j.cell.2007.02.053. PMID 17512413. S2CID 16091877.
Teif VB, Rippe K (October 2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.

ncbi.nlm.nih.gov

Zhu J, Adli M, Zou JY, Verstappen G, Coyne M, Zhang X, et al. (January 2013). "Genome-wide chromatin state transitions associated with developmental and environmental cues". Cell. 152 (3): 642–54. doi:10.1016/j.cell.2012.12.033. PMC 3563935. PMID 23333102.
Eads CA, Danenberg KD, Kawakami K, Saltz LB, Blake C, Shibata D, et al. (April 2000). "MethyLight: a high-throughput assay to measure DNA methylation". Nucleic Acids Research. 28 (8): 32e–0. doi:10.1093/nar/28.8.e32. PMC 102836. PMID 10734209.
Trucchi E, Mazzarella AB, Gilfillan GD, Lorenzo MT, Schönswetter P, Paun O (April 2016). "BsRADseq: screening DNA methylation in natural populations of non-model species". Molecular Ecology. 25 (8): 1697–1713. doi:10.1111/mec.13550. PMC 4949719. PMID 26818626.
Paun O, Verhoeven KJ, Richards CL (January 2019). "Opportunities and limitations of reduced representation bisulfite sequencing in plant ecological epigenomics". The New Phytologist. 221 (2): 738–742. doi:10.1111/nph.15388. PMC 6504643. PMID 30121954.
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"The Potential Epigenetic and Anticancer Power of Dietary Flavones". 2016-10-11.