FASTA format (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "FASTA format" in English language version.

refsWebsite

Global rank English rank

20nih.gov

4^th place

14doi.org

2^nd place

4web.archive.org

1^st place

4worldcat.org

5^th place

2harvard.edu

18^th place

17^th place

1zhanggroup.org

low place

1masswerk.at

low place

1vt100.net

low place

1stackexchange.com

1,983^rd place

1,330^th place

1loc.gov

70^th place

63^rd place

1ncbi.github.io

low place

1affrc.go.jp

4,627^th place

low place

1cbrc.jp

low place

1jalview.org

low place

1oup.com

485^th place

440^th place

1ucsc.edu

3,619^th place

2,621^st place

1github.com

383^rd place

320^th place

1wiley.com

222^nd place

297^th place

1bioconductor.org

low place

affrc.go.jp

dna.affrc.go.jp

"IUPAC code table". NIAS DNA Bank. Archived from the original on 2011-08-11.

bioconductor.org

Pagès, H; Aboyoun, P; Gentleman, R; DebRoy, S (2018). "Biostrings: Efficient manipulation of biological strings". Bioconductor.org. R package version 2.48.0. doi:10.18129/B9.bioc.Biostrings.

cbrc.jp

mafft.cbrc.jp

"anysymbol". MAFFT - a multiple sequence alignment program.

doi.org

Lipman DJ, Pearson WR (March 1985). "Rapid and sensitive protein similarity searches". Science. 227 (4693): 1435–41. Bibcode:1985Sci...227.1435L. doi:10.1126/science.2983426. PMID 2983426.
Pearson WR, Lipman DJ (April 1988). "Improved tools for biological sequence comparison". Proceedings of the National Academy of Sciences of the United States of America. 85 (8): 2444–8. Bibcode:1988PNAS...85.2444P. doi:10.1073/pnas.85.8.2444. PMC 280013. PMID 3162770.
Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM (April 2010). "The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants". Nucleic Acids Research. 38 (6): 1767–71. doi:10.1093/nar/gkp1137. PMC 2847217. PMID 20015970.
Pinho AJ, Pratas D (January 2014). "MFCompress: a compression tool for FASTA and multi-FASTA data". Bioinformatics. 30 (1): 117–8. doi:10.1093/bioinformatics/btt594. PMC 3866555. PMID 24132931.
Lan, Divon; Tobler, Ray; Souilmi, Yassine; Llamas, Bastien (2021-02-15). "Genozip: a universal extensible genomic data compressor". Bioinformatics. 37 (16): 2225–2230. doi:10.1093/bioinformatics/btab102. ISSN 1367-4803. PMC 8388020. PMID 33585897.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J. (2016). "A Survey on Data Compression Methods for Biological Sequences". Information. 7 (4): 56. doi:10.3390/info7040056. ISSN 2078-2489.
Kryukov K, Ueda MT, Nakagawa S, Imanishi T (July 2020). "Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences". GigaScience. 9 (7): giaa072. doi:10.1093/gigascience/giaa072. PMC 7336184. PMID 32627830.
Pratas D, Hosseini M, Pinho A (2017). "Cryfa: a tool to compact and encrypt FASTA files". 11th International Conference on Practical Applications of Computational Biology & Bioinformatics (PACBB). Advances in Intelligent Systems and Computing. Vol. 616. Springer. pp. 305–312. doi:10.1007/978-3-319-60816-7_37. ISBN 978-3-319-60815-0.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J (2019-01-01). Berger, Bonnie (ed.). "Cryfa: a secure encryption tool for genomic data". Bioinformatics. 35 (1): 146–148. doi:10.1093/bioinformatics/bty645. ISSN 1367-4803. PMC 6298042. PMID 30020420.
Villesen, P. (2007). "FaBox: an online toolbox for fasta sequences". Molecular Ecology Notes. 7 (6): 965–968. doi:10.1111/j.1471-8286.2007.01821.x. ISSN 1471-8278.
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N, Galaxy Team, Taylor J, Nekrutenko A (2014). "Dissemination of scientific software with Galaxy ToolShed". Genome Biology. 15 (2): 403. doi:10.1186/gb4161. PMC 4038738. PMID 25001293.
Sauvage T, Plouviez S, Schmidt WE, Fredericq S (March 2018). "TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees". BMC Research Notes. 11 (1): 403. doi:10.1186/s13104-018-3268-y. PMC 5838971. PMID 29506565.
Pagès, H; Aboyoun, P; Gentleman, R; DebRoy, S (2018). "Biostrings: Efficient manipulation of biological strings". Bioconductor.org. R package version 2.48.0. doi:10.18129/B9.bioc.Biostrings.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (July 2008). "Phylogeny.fr: robust phylogenetic analysis for the non-specialist". Nucleic Acids Research. 36 (Web Server issue): W465–9. doi:10.1093/nar/gkn180. PMC 2447785. PMID 18424797.

github.com

"soedinglab/hh-suite: reformat.pl". GitHub. 20 November 2022.

harvard.edu

ui.adsabs.harvard.edu

Lipman DJ, Pearson WR (March 1985). "Rapid and sensitive protein similarity searches". Science. 227 (4693): 1435–41. Bibcode:1985Sci...227.1435L. doi:10.1126/science.2983426. PMID 2983426.
Pearson WR, Lipman DJ (April 1988). "Improved tools for biological sequence comparison". Proceedings of the National Academy of Sciences of the United States of America. 85 (8): 2444–8. Bibcode:1988PNAS...85.2444P. doi:10.1073/pnas.85.8.2444. PMC 280013. PMID 3162770.

jalview.org

"Alignment Fileformats". 22 May 2019. Retrieved 22 May 2019.

loc.gov

"FASTA Database Format". www.loc.gov. 2023-08-01. Retrieved 2024-03-15.

masswerk.at

Landsteiner, mass:werk, Norbert (2019-02-20). "(Now Go Bang!) Raster CRT Typography (According to DEC)". Now Go Bang! — mass:werk / Blog. Retrieved 2024-03-15.{{cite web}}: CS1 maint: multiple names: authors list (link)

ncbi.github.io

NCBI C++ Toolkit Book. National Center for Biotechnology Information. Retrieved 2018-12-19.

nih.gov

pubmed.ncbi.nlm.nih.gov

Lipman DJ, Pearson WR (March 1985). "Rapid and sensitive protein similarity searches". Science. 227 (4693): 1435–41. Bibcode:1985Sci...227.1435L. doi:10.1126/science.2983426. PMID 2983426.
Pearson WR, Lipman DJ (April 1988). "Improved tools for biological sequence comparison". Proceedings of the National Academy of Sciences of the United States of America. 85 (8): 2444–8. Bibcode:1988PNAS...85.2444P. doi:10.1073/pnas.85.8.2444. PMC 280013. PMID 3162770.
Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM (April 2010). "The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants". Nucleic Acids Research. 38 (6): 1767–71. doi:10.1093/nar/gkp1137. PMC 2847217. PMID 20015970.
Pinho AJ, Pratas D (January 2014). "MFCompress: a compression tool for FASTA and multi-FASTA data". Bioinformatics. 30 (1): 117–8. doi:10.1093/bioinformatics/btt594. PMC 3866555. PMID 24132931.
Lan, Divon; Tobler, Ray; Souilmi, Yassine; Llamas, Bastien (2021-02-15). "Genozip: a universal extensible genomic data compressor". Bioinformatics. 37 (16): 2225–2230. doi:10.1093/bioinformatics/btab102. ISSN 1367-4803. PMC 8388020. PMID 33585897.
Kryukov K, Ueda MT, Nakagawa S, Imanishi T (July 2020). "Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences". GigaScience. 9 (7): giaa072. doi:10.1093/gigascience/giaa072. PMC 7336184. PMID 32627830.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J (2019-01-01). Berger, Bonnie (ed.). "Cryfa: a secure encryption tool for genomic data". Bioinformatics. 35 (1): 146–148. doi:10.1093/bioinformatics/bty645. ISSN 1367-4803. PMC 6298042. PMID 30020420.
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N, Galaxy Team, Taylor J, Nekrutenko A (2014). "Dissemination of scientific software with Galaxy ToolShed". Genome Biology. 15 (2): 403. doi:10.1186/gb4161. PMC 4038738. PMID 25001293.
Sauvage T, Plouviez S, Schmidt WE, Fredericq S (March 2018). "TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees". BMC Research Notes. 11 (1): 403. doi:10.1186/s13104-018-3268-y. PMC 5838971. PMID 29506565.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (July 2008). "Phylogeny.fr: robust phylogenetic analysis for the non-specialist". Nucleic Acids Research. 36 (Web Server issue): W465–9. doi:10.1093/nar/gkn180. PMC 2447785. PMID 18424797.

ncbi.nlm.nih.gov

Pearson WR, Lipman DJ (April 1988). "Improved tools for biological sequence comparison". Proceedings of the National Academy of Sciences of the United States of America. 85 (8): 2444–8. Bibcode:1988PNAS...85.2444P. doi:10.1073/pnas.85.8.2444. PMC 280013. PMID 3162770.
Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM (April 2010). "The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants". Nucleic Acids Research. 38 (6): 1767–71. doi:10.1093/nar/gkp1137. PMC 2847217. PMID 20015970.
Tao Tao (2011-08-24). "Single Letter Codes for Nucleotides". [NCBI Learning Center]. National Center for Biotechnology Information. Archived from the original on 2012-09-14. Retrieved 2012-03-15.
Pinho AJ, Pratas D (January 2014). "MFCompress: a compression tool for FASTA and multi-FASTA data". Bioinformatics. 30 (1): 117–8. doi:10.1093/bioinformatics/btt594. PMC 3866555. PMID 24132931.
Lan, Divon; Tobler, Ray; Souilmi, Yassine; Llamas, Bastien (2021-02-15). "Genozip: a universal extensible genomic data compressor". Bioinformatics. 37 (16): 2225–2230. doi:10.1093/bioinformatics/btab102. ISSN 1367-4803. PMC 8388020. PMID 33585897.
Kryukov K, Ueda MT, Nakagawa S, Imanishi T (July 2020). "Sequence Compression Benchmark (SCB) database—A comprehensive evaluation of reference-free compressors for FASTA-formatted sequences". GigaScience. 9 (7): giaa072. doi:10.1093/gigascience/giaa072. PMC 7336184. PMID 32627830.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J (2019-01-01). Berger, Bonnie (ed.). "Cryfa: a secure encryption tool for genomic data". Bioinformatics. 35 (1): 146–148. doi:10.1093/bioinformatics/bty645. ISSN 1367-4803. PMC 6298042. PMID 30020420.
Blankenberg D, Von Kuster G, Bouvier E, Baker D, Afgan E, Stoler N, Galaxy Team, Taylor J, Nekrutenko A (2014). "Dissemination of scientific software with Galaxy ToolShed". Genome Biology. 15 (2): 403. doi:10.1186/gb4161. PMC 4038738. PMID 25001293.
Sauvage T, Plouviez S, Schmidt WE, Fredericq S (March 2018). "TREE2FASTA: a flexible Perl script for batch extraction of FASTA sequences from exploratory phylogenetic trees". BMC Research Notes. 11 (1): 403. doi:10.1186/s13104-018-3268-y. PMC 5838971. PMID 29506565.
Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O (July 2008). "Phylogeny.fr: robust phylogenetic analysis for the non-specialist". Nucleic Acids Research. 36 (Web Server issue): W465–9. doi:10.1093/nar/gkn180. PMC 2447785. PMID 18424797.

oup.com

academic.oup.com

Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J (2019-01-01). Berger, Bonnie (ed.). "Cryfa: a secure encryption tool for genomic data". Bioinformatics. 35 (1): 146–148. doi:10.1093/bioinformatics/bty645. ISSN 1367-4803. PMC 6298042. PMID 30020420.

stackexchange.com

softwareengineering.stackexchange.com

"Why is 80 characters the 'standard' limit for code width?". Software Engineering Stack Exchange. Retrieved 2024-03-15.

ucsc.edu

compbio.soe.ucsc.edu

"Description of A2M alignment format". SAMtools. Archived from the original on 2022-08-15.

vt100.net

"VT220 Built-in Glyphs". VT100. Retrieved 2024-03-15.

web.archive.org

"What is FASTA format?". Zhang Lab. Archived from the original on 2022-12-04. Retrieved 2022-12-04.
Tao Tao (2011-08-24). "Single Letter Codes for Nucleotides". [NCBI Learning Center]. National Center for Biotechnology Information. Archived from the original on 2012-09-14. Retrieved 2012-03-15.
"IUPAC code table". NIAS DNA Bank. Archived from the original on 2011-08-11.
"Description of A2M alignment format". SAMtools. Archived from the original on 2022-08-15.

wiley.com

onlinelibrary.wiley.com

Villesen, P. (2007). "FaBox: an online toolbox for fasta sequences". Molecular Ecology Notes. 7 (6): 965–968. doi:10.1111/j.1471-8286.2007.01821.x. ISSN 1471-8278.

worldcat.org

search.worldcat.org

Lan, Divon; Tobler, Ray; Souilmi, Yassine; Llamas, Bastien (2021-02-15). "Genozip: a universal extensible genomic data compressor". Bioinformatics. 37 (16): 2225–2230. doi:10.1093/bioinformatics/btab102. ISSN 1367-4803. PMC 8388020. PMID 33585897.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J. (2016). "A Survey on Data Compression Methods for Biological Sequences". Information. 7 (4): 56. doi:10.3390/info7040056. ISSN 2078-2489.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando J (2019-01-01). Berger, Bonnie (ed.). "Cryfa: a secure encryption tool for genomic data". Bioinformatics. 35 (1): 146–148. doi:10.1093/bioinformatics/bty645. ISSN 1367-4803. PMC 6298042. PMID 30020420.
Villesen, P. (2007). "FaBox: an online toolbox for fasta sequences". Molecular Ecology Notes. 7 (6): 965–968. doi:10.1111/j.1471-8286.2007.01821.x. ISSN 1471-8278.

zhanggroup.org

"What is FASTA format?". Zhang Lab. Archived from the original on 2022-12-04. Retrieved 2022-12-04.