G-quadruplex (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "G-quadruplex" in English language version.

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Largy E, Mergny J, Gabelica V (2016). "Chapter 7. Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability". In Astrid S, Helmut S, Roland KO (eds.). The Alkali Metal Ions: Their Role in Life (PDF). Metal Ions in Life Sciences. Vol. 16. Springer. pp. 203–258. doi:10.1007/978-3-319-21756-7_7. ISBN 978-3-319-21755-0. PMID 26860303.

biorxiv.org

Sharma S, Mukherjee AK, Roy SS, Bagri S, Lier S, Verma M, Sengupta A, Kumar M, Nesse G, Pandey DP, Chowdhury S (January 2020). "Human Telomerase Expression is under Direct Transcriptional Control of the Telomere-binding-factor TRF2" (PDF). bioRxiv. doi:10.1101/2020.01.15.907626. S2CID 214472968.

cam.ac.uk

repository.cam.ac.uk

Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, et al. (October 2016). "G-quadruplex structures mark human regulatory chromatin". Nature Genetics. 48 (10): 1267–1272. doi:10.1038/ng.3662. PMID 27618450. S2CID 20967177.

doi.org

Capra JA, Paeschke K, Singh M, Zakian VA (July 2010). "G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae". PLOS Computational Biology. 6 (7): e1000861. Bibcode:2010PLSCB...6E0861C. doi:10.1371/journal.pcbi.1000861. PMC 2908698. PMID 20676380.
Routh ED, Creacy SD, Beerbower PE, Akman SA, Vaughn JP, Smaldino PJ (March 2017). "A G-quadruplex DNA-affinity Approach for Purification of Enzymaticacvly Active G4 Resolvase1". Journal of Visualized Experiments. 121 (121). doi:10.3791/55496. PMC 5409278. PMID 28362374.
Largy E, Mergny J, Gabelica V (2016). "Chapter 7. Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability". In Astrid S, Helmut S, Roland KO (eds.). The Alkali Metal Ions: Their Role in Life (PDF). Metal Ions in Life Sciences. Vol. 16. Springer. pp. 203–258. doi:10.1007/978-3-319-21756-7_7. ISBN 978-3-319-21755-0. PMID 26860303.
Sundquist WI, Klug A (December 1989). "Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops". Nature. 342 (6251): 825–9. Bibcode:1989Natur.342..825S. doi:10.1038/342825a0. PMID 2601741. S2CID 4357161.
Sen D, Gilbert W (July 1988). "Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis". Nature. 334 (6180): 364–6. Bibcode:1988Natur.334..364S. doi:10.1038/334364a0. PMID 3393228. S2CID 4351855.
Rawal P, Kummarasetti VB, Ravindran R, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (2006). "Genome-wide Prediction of G4 DNA as Regulatory Motifs: Role in Escherichia Coli Global Regulation". Genome Research. 16 (5): 644–655. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Borman S (May 28, 2007). "Ascent of quadruplexes nucleic acid structures become promising drug targets". Chemical and Engineering News. 85 (22): 12–17. doi:10.1021/cen-v085n009.p012a.
Verma A, Halder K, Halder R, Yadav VK, Rawal P, Thakur RK, Mohd F, Sharma A, Chowdhury S (2008). "Genome-wide Computational and Expression Analyses Reveal G-quadruplex DNA Motifs as Conserved Cis-Regulatory Elements in Human and Related Species". Journal of Medicinal Chemistry. 51 (18): 5641–5649. doi:10.1021/jm800448a. PMID 18767830.
Han H, Hurley LH (April 2000). "G-quadruplex DNA: a potential target for anti-cancer drug design". Trends in Pharmacological Sciences. 21 (4): 136–42. doi:10.1016/s0165-6147(00)01457-7. PMID 10740289.
Bochman ML, Paeschke K, Zakian VA (November 2012). "DNA secondary structures: stability and function of G-quadruplex structures". Nature Reviews. Genetics. 13 (11): 770–80. doi:10.1038/nrg3296. PMC 3725559. PMID 23032257.
Yadav VK, Abraham JK, Mani P, Kulshrestha R, Chowdhury S (2008). "QuadBase: Genome-Wide Database of G4 DNA--occurrence and Conservation in Human, Chimpanzee, Mouse and Rat Promoters and 146 Microbes". Nucleic Acids Research. 36 (Database): D381–D385. doi:10.1093/nar/gkm781. PMC 2238983. PMID 17962308.
Dhapola P, Chowdhury S (July 2016). "QuadBase2: Web Server for Multiplexed Guanine Quadruplex Mining and Visualization". Nucleic Acids Research. 44 (W1): W277–W283. doi:10.1093/nar/gkw425. PMC 4987949. PMID 27185890.
Rhodes D, Lipps HJ (October 2015). "G-quadruplexes and their regulatory roles in biology". Nucleic Acids Research. 43 (18): 8627–37. doi:10.1093/nar/gkv862. PMC 4605312. PMID 26350216.
Borman S (November 2009). "Promoter quadruplexes folded DNA structures in gene-activation sites may be useful cancer drug targets". Chemical and Engineering News. 87 (44): 28–30. doi:10.1021/cen-v087n044.p028.
Gellert M, Lipsett MN, Davies DR (December 1962). "Helix formation by guanylic acid". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2013–8. Bibcode:1962PNAS...48.2013G. doi:10.1073/pnas.48.12.2013. PMC 221115. PMID 13947099.
Henderson E, Hardin CC, Walk SK, Tinoco I, Blackburn EH (December 1987). "Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs". Cell. 51 (6): 899–908. doi:10.1016/0092-8674(87)90577-0. PMID 3690664. S2CID 37343642.
Müller, Sebastian; Kumari, Sunita; Rodriguez, Raphaël; Balasubramanian, Shankar (10 October 2010). "Small-molecule-mediated G-quadruplex isolation from human cells". Nature Chemistry. 2 (12): 1095–1098. Bibcode:2010NatCh...2.1095M. doi:10.1038/nchem.842. PMC 3119466. PMID 21107376.
Rodriguez, Raphaël; Miller, Kyle M; Forment, Josep V; Bradshaw, Charles R; Nikan, Mehran; Britton, Sébastien; Oelschlaegel, Tobias; Xhemalce, Blerta; Balasubramanian, Shankar; Jackson, Stephen P (5 February 2012). "Small-molecule–induced DNA damage identifies alternative DNA structures in human genes". Nature Chemical Biology. 8 (3): 301–310. doi:10.1038/nchembio.780. PMC 3433707. PMID 22306580.
Simonsson T (April 2001). "G-quadruplex DNA structures--variations on a theme". Biological Chemistry. 382 (4): 621–8. doi:10.1515/BC.2001.073. PMID 11405224. S2CID 43536134.
Burge S, Parkinson GN, Hazel P, Todd AK, Neidle S (2006). "Quadruplex DNA: sequence, topology and structure". Nucleic Acids Research. 34 (19): 5402–15. doi:10.1093/nar/gkl655. PMC 1636468. PMID 17012276.
Cao K, Ryvkin P, Johnson FB (May 2012). "Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential". Methods. 57 (1): 3–10. doi:10.1016/j.ymeth.2012.05.002. PMC 3701776. PMID 22652626.
Kudlicki AS (2016). "G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome". PLOS ONE. 11 (1): e0146174. Bibcode:2016PLoSO..1146174K. doi:10.1371/journal.pone.0146174. PMC 4699641. PMID 26727593.
Murat P, Balasubramanian S (April 2014). "Existence and consequences of G-quadruplex structures in DNA". Current Opinion in Genetics & Development. 25 (25): 22–9. doi:10.1016/j.gde.2013.10.012. PMID 24584093.
Miyoshi D, Karimata H, Sugimoto N (June 2006). "Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions". Journal of the American Chemical Society. 128 (24): 7957–63. doi:10.1021/ja061267m. PMID 16771510.
Zheng KW, Chen Z, Hao YH, Tan Z (January 2010). "Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA". Nucleic Acids Research. 38 (1): 327–38. doi:10.1093/nar/gkp898. PMC 2800236. PMID 19858105.
Endoh T, Rode AB, Takahashi S, Kataoka Y, Kuwahara M, Sugimoto N (February 2016). "Real-Time Monitoring of G-Quadruplex Formation during Transcription". Analytical Chemistry. 88 (4): 1984–9. doi:10.1021/acs.analchem.5b04396. PMID 26810457.
Wang Q, Liu JQ, Chen Z, Zheng KW, Chen CY, Hao YH, Tan Z (August 2011). "G-quadruplex formation at the 3' end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase". Nucleic Acids Research. 39 (14): 6229–37. doi:10.1093/nar/gkr164. PMC 3152327. PMID 21441540.
Schaffitzel C, Berger I, Postberg J, Hanes J, Lipps HJ, Plückthun A (July 2001). "In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei". Proceedings of the National Academy of Sciences of the United States of America. 98 (15): 8572–7. Bibcode:2001PNAS...98.8572S. doi:10.1073/pnas.141229498. PMC 37477. PMID 11438689.
Paeschke K, Simonsson T, Postberg J, Rhodes D, Lipps HJ (October 2005). "Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo". Nature Structural & Molecular Biology. 12 (10): 847–54. doi:10.1038/nsmb982. PMID 16142245. S2CID 6079323.
Kar A, Jones N, Arat NÖ, Fishel R, Griffith JD (June 2018). "Long repeating (TTAGGG) _n single-stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation". The Journal of Biological Chemistry. 293 (24): 9473–9485. doi:10.1074/jbc.RA118.002158. PMC 6005428. PMID 29674319.
Volná A, Bartas M, Karlický V, Nezval J, Kundrátová K, Pečinka P, et al. (July 2021). "G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story". International Journal of Molecular Sciences. 22 (14): 7381. doi:10.3390/ijms22147381. PMC 8306923. PMID 34299001.
Simonsson T, Pecinka P, Kubista M (March 1998). "DNA tetraplex formation in the control region of c-myc". Nucleic Acids Research. 26 (5): 1167–72. doi:10.1093/nar/26.5.1167. PMC 147388. PMID 9469822.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Huppert JL, Balasubramanian S (14 December 2006). "G-quadruplexes in promoters throughout the human genome". Nucleic Acids Research. 35 (2): 406–13. doi:10.1093/nar/gkl1057. PMC 1802602. PMID 17169996.
Dai J, Dexheimer TS, Chen D, Carver M, Ambrus A, Jones RA, Yang D (February 2006). "An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution". Journal of the American Chemical Society. 128 (4): 1096–8. doi:10.1021/ja055636a. PMC 2556172. PMID 16433524.
Fernando H, Reszka AP, Huppert J, Ladame S, Rankin S, Venkitaraman AR, Neidle S, Balasubramanian S (June 2006). "A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene". Biochemistry. 45 (25): 7854–60. doi:10.1021/bi0601510. PMC 2195898. PMID 16784237.
Huppert JL, Balasubramanian S (2005). "Prevalence of quadruplexes in the human genome". Nucleic Acids Research. 33 (9): 2908–16. doi:10.1093/nar/gki609. PMC 1140081. PMID 15914667.
Rawal P, Kummarasetti VB, Ravindran J, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (May 2006). "Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation". Genome Research. 16 (5): 644–55. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Kamath-Loeb A, Loeb LA, Fry M (2012). Cotterill S (ed.). "The Werner syndrome protein is distinguished from the Bloom syndrome protein by its capacity to tightly bind diverse DNA structures". PLOS ONE. 7 (1): e30189. Bibcode:2012PLoSO...730189K. doi:10.1371/journal.pone.0030189. PMC 3260238. PMID 22272300.
Vaughn JP, Creacy SD, Routh ED, Joyner-Butt C, Jenkins GS, Pauli S, Nagamine Y, Akman SA (November 2005). "The DEXH protein product of the DHX36 gene is the major source of tetramolecular quadruplex G4-DNA resolving activity in HeLa cell lysates". The Journal of Biological Chemistry. 280 (46): 38117–20. doi:10.1074/jbc.C500348200. PMID 16150737.
Chen MC, Ferré-D'Amaré AR (15 August 2017). "Structural Basis of DEAH/RHA Helicase Activity". Crystals. 7 (8): 253. doi:10.3390/cryst7080253.
Thakur RK, Kumar P, Halder K, Verma A, Kar A, Parent JL, Basundra R, Kumar A, Chowdhury S (January 2009). "Metastases Suppressor NM23-H2 Interaction With G-quadruplex DNA Within c-MYC Promoter Nuclease Hypersensitive Element Induces c-MYC Expression". Nucleic Acids Research. 37 (1): 172–183. doi:10.1093/nar/gkn919. PMC 2615625. PMID 19033359.
Borman S (November 2009). "Promoter Quadruplexes Folded DNA structures in gene-activation sites may be useful cancer drug targets". Chemical and Engineering News. 87 (44): 28–30. doi:10.1021/cen-v087n044.p028.
Saha D, Singh A, Hussain T, Srivastava V, Sengupta S, Kar A, Dhapola P, Ummanni R, Chowdhury S (July 2017). "Epigenetic Suppression of Human Telomerase ( hTERT) Is Mediated by the Metastasis Suppressor NME2 in a G-quadruplex-dependent Fashion". The Journal of Biological Chemistry. 292 (37): 15205–15215. doi:10.1074/jbc.M117.792077. PMC 5602382. PMID 28717007.
Mukherjee AK, Sharma S, Bagri S, Kutum R, Kumar P, Hussain A, Singh P, Saha D, Kar A, Dash D, Chowdhury S (November 2019). "Telomere Repeat-Binding Factor 2 Binds Extensively to Extra-Telomeric G-quadruplexes and Regulates the Epigenetic Status of Several Gene Promoters". The Journal of Biological Chemistry. 294 (47): 17709–17722. doi:10.1074/jbc.RA119.008687. PMC 6879327. PMID 31575660.
Maizels N, Gray LT (April 2013). Rosenberg SM (ed.). "The G4 genome". PLOS Genetics. 9 (4): e1003468. doi:10.1371/journal.pgen.1003468. PMC 3630100. PMID 23637633.
Biffi G, Tannahill D, McCafferty J, Balasubramanian S (March 2013). "Quantitative visualization of DNA G-quadruplex structures in human cells". Nature Chemistry. 5 (3): 182–6. Bibcode:2013NatCh...5..182B. doi:10.1038/nchem.1548. PMC 3622242. PMID 23422559.
Chen MC, Tippana R, Demeshkina NA, Murat P, Balasubramanian S, Myong S, Ferré-D'Amaré AR (June 2018). "Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36". Nature. 558 (7710): 465–469. Bibcode:2018Natur.558..465C. doi:10.1038/s41586-018-0209-9. PMC 6261253. PMID 29899445.
Rice C, Skordalakes E (2016). "Structure and function of the telomeric CST complex". Computational and Structural Biotechnology Journal. 14: 161–7. doi:10.1016/j.csbj.2016.04.002. PMC 4872678. PMID 27239262.
Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, et al. (October 2016). "G-quadruplex structures mark human regulatory chromatin". Nature Genetics. 48 (10): 1267–1272. doi:10.1038/ng.3662. PMID 27618450. S2CID 20967177.
Poetsch AR (2020). "AP-Seq: A Method to Measure Apurinic Sites and Small Base Adducts Genome-Wide". The Nucleus. Methods in Molecular Biology. Vol. 2175. Clifton, N.J. pp. 95–108. doi:10.1007/978-1-0716-0763-3_8. ISBN 978-1-0716-0762-6. ISSN 1940-6029. PMID 32681486. S2CID 220631202.{{cite book}}: CS1 maint: location missing publisher (link)
Roychoudhury S, Pramanik S, Harris HL, Tarpley M, Sarkar A, Spagnol G, et al. (May 2020). "Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome". Proceedings of the National Academy of Sciences of the United States of America. 117 (21): 11409–11420. Bibcode:2020PNAS..11711409R. doi:10.1073/pnas.1912355117. PMC 7260947. PMID 32404420.
Canugovi C, Shamanna RA, Croteau DL, Bohr VA (June 2014). "Base excision DNA repair levels in mitochondrial lysates of Alzheimer's disease". Neurobiology of Aging. 35 (6): 1293–1300. doi:10.1016/j.neurobiolaging.2014.01.004. PMC 5576885. PMID 24485507.
Sun D, Hurley LH (May 2009). "The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression". Journal of Medicinal Chemistry. 52 (9): 2863–2874. doi:10.1021/jm900055s. PMC 2757002. PMID 19385599.
Hill JW, Hazra TK, Izumi T, Mitra S (January 2001). "Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair". Nucleic Acids Research. 29 (2): 430–438. doi:10.1093/nar/29.2.430. PMC 29662. PMID 11139613.
Burrows CJ, Muller JG (May 1998). "Oxidative Nucleobase Modifications Leading to Strand Scission". Chemical Reviews. 98 (3): 1109–1152. doi:10.1021/cr960421s. PMID 11848927.
Poetsch AR (2020-01-07). "The genomics of oxidative DNA damage, repair, and resulting mutagenesis". Computational and Structural Biotechnology Journal. 18: 207–219. doi:10.1016/j.csbj.2019.12.013. PMC 6974700. PMID 31993111.
Fleming AM, Burrows CJ (October 2017). "8-Oxo-7,8-dihydro-2'-deoxyguanosine and abasic site tandem lesions are oxidation prone yielding hydantoin products that strongly destabilize duplex DNA". Organic & Biomolecular Chemistry. 15 (39): 8341–8353. doi:10.1039/C7OB02096A. PMC 5636683. PMID 28936535.
Kitsera N, Rodriguez-Alvarez M, Emmert S, Carell T, Khobta A (September 2019). "Nucleotide excision repair of abasic DNA lesions". Nucleic Acids Research. 47 (16): 8537–8547. doi:10.1093/nar/gkz558. PMC 6895268. PMID 31226203.
Roychoudhury S, Nath S, Song H, Hegde ML, Bellot LJ, Mantha AK, et al. (March 2017). "Human Apurinic/Apyrimidinic Endonuclease (APE1) Is Acetylated at DNA Damage Sites in Chromatin, and Acetylation Modulates Its DNA Repair Activity". Molecular and Cellular Biology. 37 (6). doi:10.1128/mcb.00401-16. PMC 5335514. PMID 27994014.
Chattopadhyay R, Das S, Maiti AK, Boldogh I, Xie J, Hazra TK, et al. (December 2008). "Regulatory role of human AP-endonuclease (APE1/Ref-1) in YB-1-mediated activation of the multidrug resistance gene MDR1". Molecular and Cellular Biology. 28 (23): 7066–7080. doi:10.1128/mcb.00244-08. PMC 2593380. PMID 18809583.
Bhakat KK, Izumi T, Yang SH, Hazra TK, Mitra S (December 2003). "Role of acetylated human AP-endonuclease (APE1/Ref-1) in regulation of the parathyroid hormone gene". The EMBO Journal. 22 (23): 6299–6309. doi:10.1093/emboj/cdg595. PMC 291836. PMID 14633989.
Yamamori T, DeRicco J, Naqvi A, Hoffman TA, Mattagajasingh I, Kasuno K, et al. (January 2010). "SIRT1 deacetylates APE1 and regulates cellular base excision repair". Nucleic Acids Research. 38 (3): 832–845. doi:10.1093/nar/gkp1039. PMC 2817463. PMID 19934257.
Neidle S (July 2016). "Quadruplex Nucleic Acids as Novel Therapeutic Targets" (PDF). Journal of Medicinal Chemistry. 59 (13): 5987–6011. doi:10.1021/acs.jmedchem.5b01835. PMID 26840940.
Chen Y, Yang D (September 2012). Sequence, stability, and structure of G-quadruplexes and their interactions with drugs. Vol. Chapter 17. pp. 17.5.1–17.5.17. doi:10.1002/0471142700.nc1705s50. ISBN 978-0471142706. PMC 3463244. PMID 22956454. {{cite book}}: |journal= ignored (help)
Brooks TA, Kendrick S, Hurley L (September 2010). "Making sense of G-quadruplex and i-motif functions in oncogene promoters". The FEBS Journal. 277 (17): 3459–69. doi:10.1111/j.1742-4658.2010.07759.x. PMC 2971675. PMID 20670278.
Ou TM, Lin J, Lu YJ, Hou JQ, Tan JH, Chen SH, Li Z, Li YP, Li D, Gu LQ, Huang ZS (August 2011). "Inhibition of cell proliferation by quindoline derivative (SYUIQ-05) through its preferential interaction with c-myc promoter G-quadruplex". Journal of Medicinal Chemistry. 54 (16): 5671–9. doi:10.1021/jm200062u. PMID 21774525.
Sharma S, Mukherjee AK, Roy SS, Bagri S, Lier S, Verma M, Sengupta A, Kumar M, Nesse G, Pandey DP, Chowdhury S (January 2020). "Human Telomerase Expression is under Direct Transcriptional Control of the Telomere-binding-factor TRF2" (PDF). bioRxiv. doi:10.1101/2020.01.15.907626. S2CID 214472968.
Sun D, Guo K, Rusche JJ, Hurley LH (2005-10-12). "Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents". Nucleic Acids Research. 33 (18): 6070–80. doi:10.1093/nar/gki917. PMC 1266068. PMID 16239639.
Hussain T, Saha D, Purohit G, Mukherjee AK, Sharma S, Sengupta S, Dhapola P, Maji B, Vedagopuram S, Horikoshi NT, Horikoshi N, Pandita RK, Bhattacharya S, Bajaj A, Riou JF, Pandita TK, Chowdhury S (September 2017). "Transcription Regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 Is Epigenetically Controlled Through the REST Repressor Complex". Scientific Reports. 7 (1): 11541. Bibcode:2017NatSR...711541H. doi:10.1038/s41598-017-11177-1. PMC 5599563. PMID 28912501.
De Armond R, Wood S, Sun D, Hurley LH, Ebbinghaus SW (December 2005). "Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1alpha promoter". Biochemistry. 44 (49): 16341–50. doi:10.1021/bi051618u. PMID 16331995.
Guo K, Pourpak A, Beetz-Rogers K, Gokhale V, Sun D, Hurley LH (August 2007). "Formation of pseudosymmetrical G-quadruplex and i-motif structures in the proximal promoter region of the RET oncogene". Journal of the American Chemical Society. 129 (33): 10220–8. doi:10.1021/ja072185g. PMC 2566970. PMID 17672459.
Qin Y, Rezler EM, Gokhale V, Sun D, Hurley LH (2007-11-26). "Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4". Nucleic Acids Research. 35 (22): 7698–713. doi:10.1093/nar/gkm538. PMC 2190695. PMID 17984069.
Chilakamarthi U, Koteshwar D, Jinka S, Vamsi Krishna N, Sridharan K, Nagesh N, Giribabu L (November 2018). "Novel Amphiphilic G-Quadruplex Binding Synthetic Derivative of TMPyP4 and Its Effect on Cancer Cell Proliferation and Apoptosis Induction". Biochemistry. 57 (46): 6514–6527. doi:10.1021/acs.biochem.8b00843. PMID 30369235. S2CID 53093959.
Ohnmacht SA, Marchetti C, Gunaratnam M, Besser RJ, Haider SM, Di Vita G, Lowe HL, Mellinas-Gomez M, Diocou S, Robson M, Šponer J, Islam B, Pedley RB, Hartley JA, Neidle S (June 2015). "A G-quadruplex-binding compound showing anti-tumour activity in an in vivo model for pancreatic cancer". Scientific Reports. 5: 11385. Bibcode:2015NatSR...511385O. doi:10.1038/srep11385. PMC 4468576. PMID 26077929.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Collie GW, Promontorio R, Hampel SM, Micco M, Neidle S, Parkinson GN (February 2012). "Structural basis for telomeric G-quadruplex targeting by naphthalene diimide ligands". Journal of the American Chemical Society. 134 (5): 2723–31. doi:10.1021/ja2102423. PMID 22280460.
Todd AK, Johnston M, Neidle S (2005). "Highly prevalent putative quadruplex sequence motifs in human DNA". Nucleic Acids Research. 33 (9): 2901–7. doi:10.1093/nar/gki553. PMC 1140077. PMID 15914666.
Frank-Kamenetskii MD, Mirkin SM (1995). "Triplex DNA structures". Annual Review of Biochemistry. 64 (9): 65–95. doi:10.1146/annurev.bi.64.070195.000433. PMID 7574496.
Guo K, Gokhale V, Hurley LH, Sun D (August 2008). "Intramolecularly folded G-quadruplex and i-motif structures in the proximal promoter of the vascular endothelial growth factor gene". Nucleic Acids Research. 36 (14): 4598–608. doi:10.1093/nar/gkn380. PMC 2504309. PMID 18614607.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.
Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Bartas, Martin; Fojta, Miroslav; Šťastný, Jiří; Mergny, Jean-Louis (2019-09-15). Hancock, John (ed.). "G4Hunter web application: a web server for G-quadruplex prediction". Bioinformatics. 35 (18): 3493–3495. doi:10.1093/bioinformatics/btz087. ISSN 1367-4803. PMC 6748775. PMID 30721922.
Garant, Jean-Michel; Perreault, Jean-Pierre; Scott, Michelle S. (2018). "G4RNA screener web server: User focused interface for RNA G-quadruplex prediction". Biochimie. 151: 115–118. doi:10.1016/j.biochi.2018.06.002. PMID 29885355. S2CID 47005625.
Kwok CK, Merrick CJ (October 2017). "G-Quadruplexes: Prediction, Characterization, and Biological Application" (PDF). Trends in Biotechnology. 35 (10): 997–1013. doi:10.1016/j.tibtech.2017.06.012. PMID 28755976.
Han H, Hurley LH, Salazar M (January 1999). "A DNA polymerase stop assay for G-quadruplex-interactive compounds". Nucleic Acids Research. 27 (2): 537–542. doi:10.1093/nar/27.2.537. PMC 148212. PMID 9862977.
Sun D, Hurley LH (2009-10-23). "Biochemical Techniques for the Characterization of G-Quadruplex Structures: EMSA, DMS Footprinting, and DNA Polymerase Stop Assay". G-Quadruplex DNA. Methods in Molecular Biology. Vol. 608. Humana Press. pp. 65–79. doi:10.1007/978-1-59745-363-9_5. ISBN 9781588299505. PMC 2797547. PMID 20012416.
Paramasivan S, Rujan I, Bolton PH (December 2007). "Circular dichroism of quadruplex DNAs: applications to structure, cation effects and ligand binding". Methods. 43 (4): 324–331. doi:10.1016/j.ymeth.2007.02.009. PMID 17967702.
Mergny JL, Phan AT, Lacroix L (September 1998). "Following G-quartet formation by UV-spectroscopy". FEBS Letters. 435 (1): 74–78. doi:10.1016/s0014-5793(98)01043-6. PMID 9755862. S2CID 1306129.
An N, Fleming AM, Middleton EG, Burrows CJ (October 2014). "Single-molecule investigation of G-quadruplex folds of the human telomere sequence in a protein nanocavity". Proceedings of the National Academy of Sciences of the United States of America. 111 (40): 14325–14331. Bibcode:2014PNAS..11114325A. doi:10.1073/pnas.1415944111. PMC 4209999. PMID 25225404.
Bošković F, Zhu J, Chen K, Keyser UF (November 2019). "Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores". Nano Letters. 19 (11): 7996–8001. Bibcode:2019NanoL..19.7996B. doi:10.1021/acs.nanolett.9b03184. PMID 31577148. S2CID 203638480.
Simone R, Fratta P, Neidle S, Parkinson GN, Isaacs AM (June 2015). "G-quadruplexes: Emerging roles in neurodegenerative diseases and the non-coding transcriptome". FEBS Letters. 589 (14): 1653–68. doi:10.1016/j.febslet.2015.05.003. PMID 25979174.
Ratnavalli E, Brayne C, Dawson K, Hodges JR (June 2002). "The prevalence of frontotemporal dementia". Neurology. 58 (11): 1615–21. doi:10.1212/WNL.58.11.1615. PMID 12058088. S2CID 45904851.
Rutherford NJ, Heckman MG, Dejesus-Hernandez M, Baker MC, Soto-Ortolaza AI, Rayaprolu S, Stewart H, Finger E, Volkening K, Seeley WW, Hatanpaa KJ, Lomen-Hoerth C, Kertesz A, Bigio EH, Lippa C, Knopman DS, Kretzschmar HA, Neumann M, Caselli RJ, White CL, Mackenzie IR, Petersen RC, Strong MJ, Miller BL, Boeve BF, Uitti RJ, Boylan KB, Wszolek ZK, Graff-Radford NR, Dickson DW, Ross OA, Rademakers R (December 2012). "Length of normal alleles of C9ORF72 GGGGCC repeat do not influence disease phenotype". Neurobiology of Aging. 33 (12): 2950.e5–7. doi:10.1016/j.neurobiolaging.2012.07.005. PMC 3617405. PMID 22840558.
Beck J, Poulter M, Hensman D, Rohrer JD, Mahoney CJ, Adamson G, Campbell T, Uphill J, Borg A, Fratta P, Orrell RW, Malaspina A, Rowe J, Brown J, Hodges J, Sidle K, Polke JM, Houlden H, Schott JM, Fox NC, Rossor MN, Tabrizi SJ, Isaacs AM, Hardy J, Warren JD, Collinge J, Mead S (March 2013). "Large C9orf72 hexanucleotide repeat expansions are seen in multiple neurodegenerative syndromes and are more frequent than expected in the UK population". American Journal of Human Genetics. 92 (3): 345–53. doi:10.1016/j.ajhg.2013.01.011. PMC 3591848. PMID 23434116.
Fratta P, Mizielinska S, Nicoll AJ, Zloh M, Fisher EM, Parkinson G, Isaacs AM (December 2012). "C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes". Scientific Reports. 2: 1016. Bibcode:2012NatSR...2E1016F. doi:10.1038/srep01016. PMC 3527825. PMID 23264878.
Reddy K, Zamiri B, Stanley SY, Macgregor RB, Pearson CE (April 2013). "The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures". The Journal of Biological Chemistry. 288 (14): 9860–6. doi:10.1074/jbc.C113.452532. PMC 3617286. PMID 23423380.
Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J (March 2014). "C9orf72 nucleotide repeat structures initiate molecular cascades of disease". Nature. 507 (7491): 195–200. Bibcode:2014Natur.507..195H. doi:10.1038/nature13124. PMC 4046618. PMID 24598541.
Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB (November 2001). "Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function". Cell. 107 (4): 489–499. doi:10.1016/S0092-8674(01)00566-9. PMID 11719189. S2CID 8203054.
Ceman S, O'Donnell WT, Reed M, Patton S, Pohl J, Warren ST (December 2003). "Phosphorylation influences the translation state of FMRP-associated polyribosomes". Human Molecular Genetics. 12 (24): 3295–3305. doi:10.1093/hmg/ddg350. PMID 14570712.
Fähling M, Mrowka R, Steege A, Kirschner KM, Benko E, Förstera B, et al. (February 2009). "Translational regulation of the human achaete-scute homologue-1 by fragile X mental retardation protein". The Journal of Biological Chemistry. 284 (7): 4255–4266. doi:10.1074/jbc.M807354200. PMID 19097999.
Pieretti M, Zhang FP, Fu YH, Warren ST, Oostra BA, Caskey CT, Nelson DL (August 1991). "Absence of expression of the FMR-1 gene in fragile X syndrome". Cell. 66 (4): 817–822. doi:10.1016/0092-8674(91)90125-I. PMID 1878973. S2CID 31455523.
Sutcliffe JS, Nelson DL, Zhang F, Pieretti M, Caskey CT, Saxe D, Warren ST (September 1992). "DNA methylation represses FMR-1 transcription in fragile X syndrome". Human Molecular Genetics. 1 (6): 397–400. doi:10.1093/hmg/1.6.397. PMID 1301913.
Mizielinska S, Isaacs AM (October 2014). "C9orf72 amyotrophic lateral sclerosis and frontotemporal dementia: gain or loss of function?". Current Opinion in Neurology. 27 (5): 515–23. doi:10.1097/WCO.0000000000000130. PMC 4165481. PMID 25188012.
Donnelly CJ, Zhang PW, Pham JT, Haeusler AR, Heusler AR, Mistry NA, Vidensky S, Daley EL, Poth EM, Hoover B, Fines DM, Maragakis N, Tienari PJ, Petrucelli L, Traynor BJ, Wang J, Rigo F, Bennett CF, Blackshaw S, Sattler R, Rothstein JD (October 2013). "RNA toxicity from the ALS/FTD C9ORF72 expansion is mitigated by antisense intervention". Neuron. 80 (2): 415–28. doi:10.1016/j.neuron.2013.10.015. PMC 4098943. PMID 24139042.
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, Drenner K, Artates JW, McAlonis-Downes M, Markmiller S, Hutt KR, Pizzo DP, Cady J, Harms MB, Baloh RH, Vandenberg SR, Yeo GW, Fu XD, Bennett CF, Cleveland DW, Ravits J (November 2013). "Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): E4530–9. Bibcode:2013PNAS..110E4530L. doi:10.1073/pnas.1318835110. PMC 3839752. PMID 24170860.
Sareen D, O'Rourke JG, Meera P, Muhammad AK, Grant S, Simpkinson M, Bell S, Carmona S, Ornelas L, Sahabian A, Gendron T, Petrucelli L, Baughn M, Ravits J, Harms MB, Rigo F, Bennett CF, Otis TS, Svendsen CN, Baloh RH (October 2013). "Targeting RNA foci in iPSC-derived motor neurons from ALS patients with a C9ORF72 repeat expansion". Science Translational Medicine. 5 (208): 208ra149. doi:10.1126/scitranslmed.3007529. PMC 4090945. PMID 24154603.
Wheeler TM, Leger AJ, Pandey SK, MacLeod AR, Nakamori M, Cheng SH, Wentworth BM, Bennett CF, Thornton CA (August 2012). "Targeting nuclear RNA for in vivo correction of myotonic dystrophy". Nature. 488 (7409): 111–5. Bibcode:2012Natur.488..111W. doi:10.1038/nature11362. PMC 4221572. PMID 22859208.
Lee JE, Bennett CF, Cooper TA (March 2012). "RNase H-mediated degradation of toxic RNA in myotonic dystrophy type 1". Proceedings of the National Academy of Sciences of the United States of America. 109 (11): 4221–6. Bibcode:2012PNAS..109.4221L. doi:10.1073/pnas.1117019109. PMC 3306674. PMID 22371589.
Carroll JB, Warby SC, Southwell AL, Doty CN, Greenlee S, Skotte N, Hung G, Bennett CF, Freier SM, Hayden MR (December 2011). "Potent and selective antisense oligonucleotides targeting single-nucleotide polymorphisms in the Huntington disease gene / allele-specific silencing of mutant huntingtin". Molecular Therapy. 19 (12): 2178–85. doi:10.1038/mt.2011.201. PMC 3242664. PMID 21971427.
Gagnon KT, Pendergraff HM, Deleavey GF, Swayze EE, Potier P, Randolph J, Roesch EB, Chattopadhyaya J, Damha MJ, Bennett CF, Montaillier C, Lemaitre M, Corey DR (November 2010). "Allele-selective inhibition of mutant huntingtin expression with antisense oligonucleotides targeting the expanded CAG repeat". Biochemistry. 49 (47): 10166–78. doi:10.1021/bi101208k. PMC 2991413. PMID 21028906.
Cogoi S, Paramasivam M, Filichev V, Géci I, Pedersen EB, Xodo LE (January 2009). "Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells". Journal of Medicinal Chemistry. 52 (2): 564–568. doi:10.1021/jm800874t. PMID 19099510.
Cogoi S, Zorzet S, Rapozzi V, Géci I, Pedersen EB, Xodo LE (April 2013). "MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice". Nucleic Acids Research. 41 (7): 4049–4064. doi:10.1093/nar/gkt127. PMC 3627599. PMID 23471001.
Campbell NH, Patel M, Tofa AB, Ghosh R, Parkinson GN, Neidle S (March 2009). "Selectivity in ligand recognition of G-quadruplex loops". Biochemistry. 48 (8): 1675–80. doi:10.1021/bi802233v. PMID 19173611.
Ohnmacht SA, Neidle S (June 2014). "Small-molecule quadruplex-targeted drug discovery". Bioorganic & Medicinal Chemistry Letters. 24 (12): 2602–12. doi:10.1016/j.bmcl.2014.04.029. PMID 24814531.
Zamiri B, Reddy K, Macgregor RB, Pearson CE (February 2014). "TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins". The Journal of Biological Chemistry. 289 (8): 4653–9. doi:10.1074/jbc.C113.502336. PMC 3931028. PMID 24371143.
Vilar R (2018). "Chapter 12. Nucleic Acid Quadruplexes and Metallo-Drugs". In Sigel A, Sigel H, Freisinger E, Sigel RK (eds.). Metallo-Drugs: Development and Action of Anticancer Agents. Vol. 18. pp. 325–349. doi:10.1515/9783110470734-018. ISBN 9783110470734. PMID 29394031. S2CID 44981950. {{cite book}}: |journal= ignored (help)

elsevier.com

linkinghub.elsevier.com

Garant, Jean-Michel; Perreault, Jean-Pierre; Scott, Michelle S. (2018). "G4RNA screener web server: User focused interface for RNA G-quadruplex prediction". Biochimie. 151: 115–118. doi:10.1016/j.biochi.2018.06.002. PMID 29885355. S2CID 47005625.

figshare.com

Collie GW, Promontorio R, Hampel SM, Micco M, Neidle S, Parkinson GN (February 2012). "Structural basis for telomeric G-quadruplex targeting by naphthalene diimide ligands". Journal of the American Chemical Society. 134 (5): 2723–31. doi:10.1021/ja2102423. PMID 22280460.

genecards.org

"Fragile X Mental Retardation". Gene Cards.

harvard.edu

ui.adsabs.harvard.edu

Capra JA, Paeschke K, Singh M, Zakian VA (July 2010). "G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae". PLOS Computational Biology. 6 (7): e1000861. Bibcode:2010PLSCB...6E0861C. doi:10.1371/journal.pcbi.1000861. PMC 2908698. PMID 20676380.
Sundquist WI, Klug A (December 1989). "Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops". Nature. 342 (6251): 825–9. Bibcode:1989Natur.342..825S. doi:10.1038/342825a0. PMID 2601741. S2CID 4357161.
Sen D, Gilbert W (July 1988). "Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis". Nature. 334 (6180): 364–6. Bibcode:1988Natur.334..364S. doi:10.1038/334364a0. PMID 3393228. S2CID 4351855.
Gellert M, Lipsett MN, Davies DR (December 1962). "Helix formation by guanylic acid". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2013–8. Bibcode:1962PNAS...48.2013G. doi:10.1073/pnas.48.12.2013. PMC 221115. PMID 13947099.
Müller, Sebastian; Kumari, Sunita; Rodriguez, Raphaël; Balasubramanian, Shankar (10 October 2010). "Small-molecule-mediated G-quadruplex isolation from human cells". Nature Chemistry. 2 (12): 1095–1098. Bibcode:2010NatCh...2.1095M. doi:10.1038/nchem.842. PMC 3119466. PMID 21107376.
Kudlicki AS (2016). "G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome". PLOS ONE. 11 (1): e0146174. Bibcode:2016PLoSO..1146174K. doi:10.1371/journal.pone.0146174. PMC 4699641. PMID 26727593.
Schaffitzel C, Berger I, Postberg J, Hanes J, Lipps HJ, Plückthun A (July 2001). "In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei". Proceedings of the National Academy of Sciences of the United States of America. 98 (15): 8572–7. Bibcode:2001PNAS...98.8572S. doi:10.1073/pnas.141229498. PMC 37477. PMID 11438689.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Kamath-Loeb A, Loeb LA, Fry M (2012). Cotterill S (ed.). "The Werner syndrome protein is distinguished from the Bloom syndrome protein by its capacity to tightly bind diverse DNA structures". PLOS ONE. 7 (1): e30189. Bibcode:2012PLoSO...730189K. doi:10.1371/journal.pone.0030189. PMC 3260238. PMID 22272300.
Biffi G, Tannahill D, McCafferty J, Balasubramanian S (March 2013). "Quantitative visualization of DNA G-quadruplex structures in human cells". Nature Chemistry. 5 (3): 182–6. Bibcode:2013NatCh...5..182B. doi:10.1038/nchem.1548. PMC 3622242. PMID 23422559.
Chen MC, Tippana R, Demeshkina NA, Murat P, Balasubramanian S, Myong S, Ferré-D'Amaré AR (June 2018). "Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36". Nature. 558 (7710): 465–469. Bibcode:2018Natur.558..465C. doi:10.1038/s41586-018-0209-9. PMC 6261253. PMID 29899445.
Roychoudhury S, Pramanik S, Harris HL, Tarpley M, Sarkar A, Spagnol G, et al. (May 2020). "Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome". Proceedings of the National Academy of Sciences of the United States of America. 117 (21): 11409–11420. Bibcode:2020PNAS..11711409R. doi:10.1073/pnas.1912355117. PMC 7260947. PMID 32404420.
Hussain T, Saha D, Purohit G, Mukherjee AK, Sharma S, Sengupta S, Dhapola P, Maji B, Vedagopuram S, Horikoshi NT, Horikoshi N, Pandita RK, Bhattacharya S, Bajaj A, Riou JF, Pandita TK, Chowdhury S (September 2017). "Transcription Regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 Is Epigenetically Controlled Through the REST Repressor Complex". Scientific Reports. 7 (1): 11541. Bibcode:2017NatSR...711541H. doi:10.1038/s41598-017-11177-1. PMC 5599563. PMID 28912501.
Ohnmacht SA, Marchetti C, Gunaratnam M, Besser RJ, Haider SM, Di Vita G, Lowe HL, Mellinas-Gomez M, Diocou S, Robson M, Šponer J, Islam B, Pedley RB, Hartley JA, Neidle S (June 2015). "A G-quadruplex-binding compound showing anti-tumour activity in an in vivo model for pancreatic cancer". Scientific Reports. 5: 11385. Bibcode:2015NatSR...511385O. doi:10.1038/srep11385. PMC 4468576. PMID 26077929.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.
An N, Fleming AM, Middleton EG, Burrows CJ (October 2014). "Single-molecule investigation of G-quadruplex folds of the human telomere sequence in a protein nanocavity". Proceedings of the National Academy of Sciences of the United States of America. 111 (40): 14325–14331. Bibcode:2014PNAS..11114325A. doi:10.1073/pnas.1415944111. PMC 4209999. PMID 25225404.
Bošković F, Zhu J, Chen K, Keyser UF (November 2019). "Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores". Nano Letters. 19 (11): 7996–8001. Bibcode:2019NanoL..19.7996B. doi:10.1021/acs.nanolett.9b03184. PMID 31577148. S2CID 203638480.
Fratta P, Mizielinska S, Nicoll AJ, Zloh M, Fisher EM, Parkinson G, Isaacs AM (December 2012). "C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes". Scientific Reports. 2: 1016. Bibcode:2012NatSR...2E1016F. doi:10.1038/srep01016. PMC 3527825. PMID 23264878.
Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J (March 2014). "C9orf72 nucleotide repeat structures initiate molecular cascades of disease". Nature. 507 (7491): 195–200. Bibcode:2014Natur.507..195H. doi:10.1038/nature13124. PMC 4046618. PMID 24598541.
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, Drenner K, Artates JW, McAlonis-Downes M, Markmiller S, Hutt KR, Pizzo DP, Cady J, Harms MB, Baloh RH, Vandenberg SR, Yeo GW, Fu XD, Bennett CF, Cleveland DW, Ravits J (November 2013). "Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): E4530–9. Bibcode:2013PNAS..110E4530L. doi:10.1073/pnas.1318835110. PMC 3839752. PMID 24170860.
Wheeler TM, Leger AJ, Pandey SK, MacLeod AR, Nakamori M, Cheng SH, Wentworth BM, Bennett CF, Thornton CA (August 2012). "Targeting nuclear RNA for in vivo correction of myotonic dystrophy". Nature. 488 (7409): 111–5. Bibcode:2012Natur.488..111W. doi:10.1038/nature11362. PMC 4221572. PMID 22859208.
Lee JE, Bennett CF, Cooper TA (March 2012). "RNase H-mediated degradation of toxic RNA in myotonic dystrophy type 1". Proceedings of the National Academy of Sciences of the United States of America. 109 (11): 4221–6. Bibcode:2012PNAS..109.4221L. doi:10.1073/pnas.1117019109. PMC 3306674. PMID 22371589.

keele.ac.uk

eprints.keele.ac.uk

Kwok CK, Merrick CJ (October 2017). "G-Quadruplexes: Prediction, Characterization, and Biological Application" (PDF). Trends in Biotechnology. 35 (10): 997–1013. doi:10.1016/j.tibtech.2017.06.012. PMID 28755976.

nih.gov

pubmed.ncbi.nlm.nih.gov

Capra JA, Paeschke K, Singh M, Zakian VA (July 2010). "G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae". PLOS Computational Biology. 6 (7): e1000861. Bibcode:2010PLSCB...6E0861C. doi:10.1371/journal.pcbi.1000861. PMC 2908698. PMID 20676380.
Routh ED, Creacy SD, Beerbower PE, Akman SA, Vaughn JP, Smaldino PJ (March 2017). "A G-quadruplex DNA-affinity Approach for Purification of Enzymaticacvly Active G4 Resolvase1". Journal of Visualized Experiments. 121 (121). doi:10.3791/55496. PMC 5409278. PMID 28362374.
Largy E, Mergny J, Gabelica V (2016). "Chapter 7. Role of Alkali Metal Ions in G-Quadruplex Nucleic Acid Structure and Stability". In Astrid S, Helmut S, Roland KO (eds.). The Alkali Metal Ions: Their Role in Life (PDF). Metal Ions in Life Sciences. Vol. 16. Springer. pp. 203–258. doi:10.1007/978-3-319-21756-7_7. ISBN 978-3-319-21755-0. PMID 26860303.
Sundquist WI, Klug A (December 1989). "Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops". Nature. 342 (6251): 825–9. Bibcode:1989Natur.342..825S. doi:10.1038/342825a0. PMID 2601741. S2CID 4357161.
Sen D, Gilbert W (July 1988). "Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis". Nature. 334 (6180): 364–6. Bibcode:1988Natur.334..364S. doi:10.1038/334364a0. PMID 3393228. S2CID 4351855.
Rawal P, Kummarasetti VB, Ravindran R, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (2006). "Genome-wide Prediction of G4 DNA as Regulatory Motifs: Role in Escherichia Coli Global Regulation". Genome Research. 16 (5): 644–655. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Verma A, Halder K, Halder R, Yadav VK, Rawal P, Thakur RK, Mohd F, Sharma A, Chowdhury S (2008). "Genome-wide Computational and Expression Analyses Reveal G-quadruplex DNA Motifs as Conserved Cis-Regulatory Elements in Human and Related Species". Journal of Medicinal Chemistry. 51 (18): 5641–5649. doi:10.1021/jm800448a. PMID 18767830.
Han H, Hurley LH (April 2000). "G-quadruplex DNA: a potential target for anti-cancer drug design". Trends in Pharmacological Sciences. 21 (4): 136–42. doi:10.1016/s0165-6147(00)01457-7. PMID 10740289.
Bochman ML, Paeschke K, Zakian VA (November 2012). "DNA secondary structures: stability and function of G-quadruplex structures". Nature Reviews. Genetics. 13 (11): 770–80. doi:10.1038/nrg3296. PMC 3725559. PMID 23032257.
Yadav VK, Abraham JK, Mani P, Kulshrestha R, Chowdhury S (2008). "QuadBase: Genome-Wide Database of G4 DNA--occurrence and Conservation in Human, Chimpanzee, Mouse and Rat Promoters and 146 Microbes". Nucleic Acids Research. 36 (Database): D381–D385. doi:10.1093/nar/gkm781. PMC 2238983. PMID 17962308.
Dhapola P, Chowdhury S (July 2016). "QuadBase2: Web Server for Multiplexed Guanine Quadruplex Mining and Visualization". Nucleic Acids Research. 44 (W1): W277–W283. doi:10.1093/nar/gkw425. PMC 4987949. PMID 27185890.
Rhodes D, Lipps HJ (October 2015). "G-quadruplexes and their regulatory roles in biology". Nucleic Acids Research. 43 (18): 8627–37. doi:10.1093/nar/gkv862. PMC 4605312. PMID 26350216.
Gellert M, Lipsett MN, Davies DR (December 1962). "Helix formation by guanylic acid". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2013–8. Bibcode:1962PNAS...48.2013G. doi:10.1073/pnas.48.12.2013. PMC 221115. PMID 13947099.
Henderson E, Hardin CC, Walk SK, Tinoco I, Blackburn EH (December 1987). "Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs". Cell. 51 (6): 899–908. doi:10.1016/0092-8674(87)90577-0. PMID 3690664. S2CID 37343642.
Müller, Sebastian; Kumari, Sunita; Rodriguez, Raphaël; Balasubramanian, Shankar (10 October 2010). "Small-molecule-mediated G-quadruplex isolation from human cells". Nature Chemistry. 2 (12): 1095–1098. Bibcode:2010NatCh...2.1095M. doi:10.1038/nchem.842. PMC 3119466. PMID 21107376.
Rodriguez, Raphaël; Miller, Kyle M; Forment, Josep V; Bradshaw, Charles R; Nikan, Mehran; Britton, Sébastien; Oelschlaegel, Tobias; Xhemalce, Blerta; Balasubramanian, Shankar; Jackson, Stephen P (5 February 2012). "Small-molecule–induced DNA damage identifies alternative DNA structures in human genes". Nature Chemical Biology. 8 (3): 301–310. doi:10.1038/nchembio.780. PMC 3433707. PMID 22306580.
Simonsson T (April 2001). "G-quadruplex DNA structures--variations on a theme". Biological Chemistry. 382 (4): 621–8. doi:10.1515/BC.2001.073. PMID 11405224. S2CID 43536134.
Burge S, Parkinson GN, Hazel P, Todd AK, Neidle S (2006). "Quadruplex DNA: sequence, topology and structure". Nucleic Acids Research. 34 (19): 5402–15. doi:10.1093/nar/gkl655. PMC 1636468. PMID 17012276.
Cao K, Ryvkin P, Johnson FB (May 2012). "Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential". Methods. 57 (1): 3–10. doi:10.1016/j.ymeth.2012.05.002. PMC 3701776. PMID 22652626.
Kudlicki AS (2016). "G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome". PLOS ONE. 11 (1): e0146174. Bibcode:2016PLoSO..1146174K. doi:10.1371/journal.pone.0146174. PMC 4699641. PMID 26727593.
Murat P, Balasubramanian S (April 2014). "Existence and consequences of G-quadruplex structures in DNA". Current Opinion in Genetics & Development. 25 (25): 22–9. doi:10.1016/j.gde.2013.10.012. PMID 24584093.
Miyoshi D, Karimata H, Sugimoto N (June 2006). "Hydration regulates thermodynamics of G-quadruplex formation under molecular crowding conditions". Journal of the American Chemical Society. 128 (24): 7957–63. doi:10.1021/ja061267m. PMID 16771510.
Zheng KW, Chen Z, Hao YH, Tan Z (January 2010). "Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA". Nucleic Acids Research. 38 (1): 327–38. doi:10.1093/nar/gkp898. PMC 2800236. PMID 19858105.
Endoh T, Rode AB, Takahashi S, Kataoka Y, Kuwahara M, Sugimoto N (February 2016). "Real-Time Monitoring of G-Quadruplex Formation during Transcription". Analytical Chemistry. 88 (4): 1984–9. doi:10.1021/acs.analchem.5b04396. PMID 26810457.
Wang Q, Liu JQ, Chen Z, Zheng KW, Chen CY, Hao YH, Tan Z (August 2011). "G-quadruplex formation at the 3' end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase". Nucleic Acids Research. 39 (14): 6229–37. doi:10.1093/nar/gkr164. PMC 3152327. PMID 21441540.
Schaffitzel C, Berger I, Postberg J, Hanes J, Lipps HJ, Plückthun A (July 2001). "In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei". Proceedings of the National Academy of Sciences of the United States of America. 98 (15): 8572–7. Bibcode:2001PNAS...98.8572S. doi:10.1073/pnas.141229498. PMC 37477. PMID 11438689.
Paeschke K, Simonsson T, Postberg J, Rhodes D, Lipps HJ (October 2005). "Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo". Nature Structural & Molecular Biology. 12 (10): 847–54. doi:10.1038/nsmb982. PMID 16142245. S2CID 6079323.
Kar A, Jones N, Arat NÖ, Fishel R, Griffith JD (June 2018). "Long repeating (TTAGGG) _n single-stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation". The Journal of Biological Chemistry. 293 (24): 9473–9485. doi:10.1074/jbc.RA118.002158. PMC 6005428. PMID 29674319.
Volná A, Bartas M, Karlický V, Nezval J, Kundrátová K, Pečinka P, et al. (July 2021). "G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story". International Journal of Molecular Sciences. 22 (14): 7381. doi:10.3390/ijms22147381. PMC 8306923. PMID 34299001.
Simonsson T, Pecinka P, Kubista M (March 1998). "DNA tetraplex formation in the control region of c-myc". Nucleic Acids Research. 26 (5): 1167–72. doi:10.1093/nar/26.5.1167. PMC 147388. PMID 9469822.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Huppert JL, Balasubramanian S (14 December 2006). "G-quadruplexes in promoters throughout the human genome". Nucleic Acids Research. 35 (2): 406–13. doi:10.1093/nar/gkl1057. PMC 1802602. PMID 17169996.
Dai J, Dexheimer TS, Chen D, Carver M, Ambrus A, Jones RA, Yang D (February 2006). "An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution". Journal of the American Chemical Society. 128 (4): 1096–8. doi:10.1021/ja055636a. PMC 2556172. PMID 16433524.
Fernando H, Reszka AP, Huppert J, Ladame S, Rankin S, Venkitaraman AR, Neidle S, Balasubramanian S (June 2006). "A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene". Biochemistry. 45 (25): 7854–60. doi:10.1021/bi0601510. PMC 2195898. PMID 16784237.
Huppert JL, Balasubramanian S (2005). "Prevalence of quadruplexes in the human genome". Nucleic Acids Research. 33 (9): 2908–16. doi:10.1093/nar/gki609. PMC 1140081. PMID 15914667.
Rawal P, Kummarasetti VB, Ravindran J, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (May 2006). "Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation". Genome Research. 16 (5): 644–55. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Kamath-Loeb A, Loeb LA, Fry M (2012). Cotterill S (ed.). "The Werner syndrome protein is distinguished from the Bloom syndrome protein by its capacity to tightly bind diverse DNA structures". PLOS ONE. 7 (1): e30189. Bibcode:2012PLoSO...730189K. doi:10.1371/journal.pone.0030189. PMC 3260238. PMID 22272300.
Vaughn JP, Creacy SD, Routh ED, Joyner-Butt C, Jenkins GS, Pauli S, Nagamine Y, Akman SA (November 2005). "The DEXH protein product of the DHX36 gene is the major source of tetramolecular quadruplex G4-DNA resolving activity in HeLa cell lysates". The Journal of Biological Chemistry. 280 (46): 38117–20. doi:10.1074/jbc.C500348200. PMID 16150737.
Thakur RK, Kumar P, Halder K, Verma A, Kar A, Parent JL, Basundra R, Kumar A, Chowdhury S (January 2009). "Metastases Suppressor NM23-H2 Interaction With G-quadruplex DNA Within c-MYC Promoter Nuclease Hypersensitive Element Induces c-MYC Expression". Nucleic Acids Research. 37 (1): 172–183. doi:10.1093/nar/gkn919. PMC 2615625. PMID 19033359.
Saha D, Singh A, Hussain T, Srivastava V, Sengupta S, Kar A, Dhapola P, Ummanni R, Chowdhury S (July 2017). "Epigenetic Suppression of Human Telomerase ( hTERT) Is Mediated by the Metastasis Suppressor NME2 in a G-quadruplex-dependent Fashion". The Journal of Biological Chemistry. 292 (37): 15205–15215. doi:10.1074/jbc.M117.792077. PMC 5602382. PMID 28717007.
Mukherjee AK, Sharma S, Bagri S, Kutum R, Kumar P, Hussain A, Singh P, Saha D, Kar A, Dash D, Chowdhury S (November 2019). "Telomere Repeat-Binding Factor 2 Binds Extensively to Extra-Telomeric G-quadruplexes and Regulates the Epigenetic Status of Several Gene Promoters". The Journal of Biological Chemistry. 294 (47): 17709–17722. doi:10.1074/jbc.RA119.008687. PMC 6879327. PMID 31575660.
Maizels N, Gray LT (April 2013). Rosenberg SM (ed.). "The G4 genome". PLOS Genetics. 9 (4): e1003468. doi:10.1371/journal.pgen.1003468. PMC 3630100. PMID 23637633.
Biffi G, Tannahill D, McCafferty J, Balasubramanian S (March 2013). "Quantitative visualization of DNA G-quadruplex structures in human cells". Nature Chemistry. 5 (3): 182–6. Bibcode:2013NatCh...5..182B. doi:10.1038/nchem.1548. PMC 3622242. PMID 23422559.
Chen MC, Tippana R, Demeshkina NA, Murat P, Balasubramanian S, Myong S, Ferré-D'Amaré AR (June 2018). "Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36". Nature. 558 (7710): 465–469. Bibcode:2018Natur.558..465C. doi:10.1038/s41586-018-0209-9. PMC 6261253. PMID 29899445.
Rice C, Skordalakes E (2016). "Structure and function of the telomeric CST complex". Computational and Structural Biotechnology Journal. 14: 161–7. doi:10.1016/j.csbj.2016.04.002. PMC 4872678. PMID 27239262.
Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, et al. (October 2016). "G-quadruplex structures mark human regulatory chromatin". Nature Genetics. 48 (10): 1267–1272. doi:10.1038/ng.3662. PMID 27618450. S2CID 20967177.
Poetsch AR (2020). "AP-Seq: A Method to Measure Apurinic Sites and Small Base Adducts Genome-Wide". The Nucleus. Methods in Molecular Biology. Vol. 2175. Clifton, N.J. pp. 95–108. doi:10.1007/978-1-0716-0763-3_8. ISBN 978-1-0716-0762-6. ISSN 1940-6029. PMID 32681486. S2CID 220631202.{{cite book}}: CS1 maint: location missing publisher (link)
Roychoudhury S, Pramanik S, Harris HL, Tarpley M, Sarkar A, Spagnol G, et al. (May 2020). "Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome". Proceedings of the National Academy of Sciences of the United States of America. 117 (21): 11409–11420. Bibcode:2020PNAS..11711409R. doi:10.1073/pnas.1912355117. PMC 7260947. PMID 32404420.
Canugovi C, Shamanna RA, Croteau DL, Bohr VA (June 2014). "Base excision DNA repair levels in mitochondrial lysates of Alzheimer's disease". Neurobiology of Aging. 35 (6): 1293–1300. doi:10.1016/j.neurobiolaging.2014.01.004. PMC 5576885. PMID 24485507.
Sun D, Hurley LH (May 2009). "The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression". Journal of Medicinal Chemistry. 52 (9): 2863–2874. doi:10.1021/jm900055s. PMC 2757002. PMID 19385599.
Hill JW, Hazra TK, Izumi T, Mitra S (January 2001). "Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair". Nucleic Acids Research. 29 (2): 430–438. doi:10.1093/nar/29.2.430. PMC 29662. PMID 11139613.
Burrows CJ, Muller JG (May 1998). "Oxidative Nucleobase Modifications Leading to Strand Scission". Chemical Reviews. 98 (3): 1109–1152. doi:10.1021/cr960421s. PMID 11848927.
Poetsch AR (2020-01-07). "The genomics of oxidative DNA damage, repair, and resulting mutagenesis". Computational and Structural Biotechnology Journal. 18: 207–219. doi:10.1016/j.csbj.2019.12.013. PMC 6974700. PMID 31993111.
Fleming AM, Burrows CJ (October 2017). "8-Oxo-7,8-dihydro-2'-deoxyguanosine and abasic site tandem lesions are oxidation prone yielding hydantoin products that strongly destabilize duplex DNA". Organic & Biomolecular Chemistry. 15 (39): 8341–8353. doi:10.1039/C7OB02096A. PMC 5636683. PMID 28936535.
Kitsera N, Rodriguez-Alvarez M, Emmert S, Carell T, Khobta A (September 2019). "Nucleotide excision repair of abasic DNA lesions". Nucleic Acids Research. 47 (16): 8537–8547. doi:10.1093/nar/gkz558. PMC 6895268. PMID 31226203.
Roychoudhury S, Nath S, Song H, Hegde ML, Bellot LJ, Mantha AK, et al. (March 2017). "Human Apurinic/Apyrimidinic Endonuclease (APE1) Is Acetylated at DNA Damage Sites in Chromatin, and Acetylation Modulates Its DNA Repair Activity". Molecular and Cellular Biology. 37 (6). doi:10.1128/mcb.00401-16. PMC 5335514. PMID 27994014.
Chattopadhyay R, Das S, Maiti AK, Boldogh I, Xie J, Hazra TK, et al. (December 2008). "Regulatory role of human AP-endonuclease (APE1/Ref-1) in YB-1-mediated activation of the multidrug resistance gene MDR1". Molecular and Cellular Biology. 28 (23): 7066–7080. doi:10.1128/mcb.00244-08. PMC 2593380. PMID 18809583.
Bhakat KK, Izumi T, Yang SH, Hazra TK, Mitra S (December 2003). "Role of acetylated human AP-endonuclease (APE1/Ref-1) in regulation of the parathyroid hormone gene". The EMBO Journal. 22 (23): 6299–6309. doi:10.1093/emboj/cdg595. PMC 291836. PMID 14633989.
Yamamori T, DeRicco J, Naqvi A, Hoffman TA, Mattagajasingh I, Kasuno K, et al. (January 2010). "SIRT1 deacetylates APE1 and regulates cellular base excision repair". Nucleic Acids Research. 38 (3): 832–845. doi:10.1093/nar/gkp1039. PMC 2817463. PMID 19934257.
Neidle S (July 2016). "Quadruplex Nucleic Acids as Novel Therapeutic Targets" (PDF). Journal of Medicinal Chemistry. 59 (13): 5987–6011. doi:10.1021/acs.jmedchem.5b01835. PMID 26840940.
Chen Y, Yang D (September 2012). Sequence, stability, and structure of G-quadruplexes and their interactions with drugs. Vol. Chapter 17. pp. 17.5.1–17.5.17. doi:10.1002/0471142700.nc1705s50. ISBN 978-0471142706. PMC 3463244. PMID 22956454. {{cite book}}: |journal= ignored (help)
Brooks TA, Kendrick S, Hurley L (September 2010). "Making sense of G-quadruplex and i-motif functions in oncogene promoters". The FEBS Journal. 277 (17): 3459–69. doi:10.1111/j.1742-4658.2010.07759.x. PMC 2971675. PMID 20670278.
Ou TM, Lin J, Lu YJ, Hou JQ, Tan JH, Chen SH, Li Z, Li YP, Li D, Gu LQ, Huang ZS (August 2011). "Inhibition of cell proliferation by quindoline derivative (SYUIQ-05) through its preferential interaction with c-myc promoter G-quadruplex". Journal of Medicinal Chemistry. 54 (16): 5671–9. doi:10.1021/jm200062u. PMID 21774525.
Sun D, Guo K, Rusche JJ, Hurley LH (2005-10-12). "Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents". Nucleic Acids Research. 33 (18): 6070–80. doi:10.1093/nar/gki917. PMC 1266068. PMID 16239639.
Hussain T, Saha D, Purohit G, Mukherjee AK, Sharma S, Sengupta S, Dhapola P, Maji B, Vedagopuram S, Horikoshi NT, Horikoshi N, Pandita RK, Bhattacharya S, Bajaj A, Riou JF, Pandita TK, Chowdhury S (September 2017). "Transcription Regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 Is Epigenetically Controlled Through the REST Repressor Complex". Scientific Reports. 7 (1): 11541. Bibcode:2017NatSR...711541H. doi:10.1038/s41598-017-11177-1. PMC 5599563. PMID 28912501.
De Armond R, Wood S, Sun D, Hurley LH, Ebbinghaus SW (December 2005). "Evidence for the presence of a guanine quadruplex forming region within a polypurine tract of the hypoxia inducible factor 1alpha promoter". Biochemistry. 44 (49): 16341–50. doi:10.1021/bi051618u. PMID 16331995.
Guo K, Pourpak A, Beetz-Rogers K, Gokhale V, Sun D, Hurley LH (August 2007). "Formation of pseudosymmetrical G-quadruplex and i-motif structures in the proximal promoter region of the RET oncogene". Journal of the American Chemical Society. 129 (33): 10220–8. doi:10.1021/ja072185g. PMC 2566970. PMID 17672459.
Qin Y, Rezler EM, Gokhale V, Sun D, Hurley LH (2007-11-26). "Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4". Nucleic Acids Research. 35 (22): 7698–713. doi:10.1093/nar/gkm538. PMC 2190695. PMID 17984069.
Chilakamarthi U, Koteshwar D, Jinka S, Vamsi Krishna N, Sridharan K, Nagesh N, Giribabu L (November 2018). "Novel Amphiphilic G-Quadruplex Binding Synthetic Derivative of TMPyP4 and Its Effect on Cancer Cell Proliferation and Apoptosis Induction". Biochemistry. 57 (46): 6514–6527. doi:10.1021/acs.biochem.8b00843. PMID 30369235. S2CID 53093959.
Ohnmacht SA, Marchetti C, Gunaratnam M, Besser RJ, Haider SM, Di Vita G, Lowe HL, Mellinas-Gomez M, Diocou S, Robson M, Šponer J, Islam B, Pedley RB, Hartley JA, Neidle S (June 2015). "A G-quadruplex-binding compound showing anti-tumour activity in an in vivo model for pancreatic cancer". Scientific Reports. 5: 11385. Bibcode:2015NatSR...511385O. doi:10.1038/srep11385. PMC 4468576. PMID 26077929.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Collie GW, Promontorio R, Hampel SM, Micco M, Neidle S, Parkinson GN (February 2012). "Structural basis for telomeric G-quadruplex targeting by naphthalene diimide ligands". Journal of the American Chemical Society. 134 (5): 2723–31. doi:10.1021/ja2102423. PMID 22280460.
Todd AK, Johnston M, Neidle S (2005). "Highly prevalent putative quadruplex sequence motifs in human DNA". Nucleic Acids Research. 33 (9): 2901–7. doi:10.1093/nar/gki553. PMC 1140077. PMID 15914666.
Frank-Kamenetskii MD, Mirkin SM (1995). "Triplex DNA structures". Annual Review of Biochemistry. 64 (9): 65–95. doi:10.1146/annurev.bi.64.070195.000433. PMID 7574496.
Guo K, Gokhale V, Hurley LH, Sun D (August 2008). "Intramolecularly folded G-quadruplex and i-motif structures in the proximal promoter of the vascular endothelial growth factor gene". Nucleic Acids Research. 36 (14): 4598–608. doi:10.1093/nar/gkn380. PMC 2504309. PMID 18614607.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.
Smith SS (2010). "Evolutionary expansion of structurally complex DNA sequences". Cancer Genomics & Proteomics. 7 (4): 207–15. PMID 20656986.
Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Bartas, Martin; Fojta, Miroslav; Šťastný, Jiří; Mergny, Jean-Louis (2019-09-15). Hancock, John (ed.). "G4Hunter web application: a web server for G-quadruplex prediction". Bioinformatics. 35 (18): 3493–3495. doi:10.1093/bioinformatics/btz087. ISSN 1367-4803. PMC 6748775. PMID 30721922.
Garant, Jean-Michel; Perreault, Jean-Pierre; Scott, Michelle S. (2018). "G4RNA screener web server: User focused interface for RNA G-quadruplex prediction". Biochimie. 151: 115–118. doi:10.1016/j.biochi.2018.06.002. PMID 29885355. S2CID 47005625.
Kwok CK, Merrick CJ (October 2017). "G-Quadruplexes: Prediction, Characterization, and Biological Application" (PDF). Trends in Biotechnology. 35 (10): 997–1013. doi:10.1016/j.tibtech.2017.06.012. PMID 28755976.
Han H, Hurley LH, Salazar M (January 1999). "A DNA polymerase stop assay for G-quadruplex-interactive compounds". Nucleic Acids Research. 27 (2): 537–542. doi:10.1093/nar/27.2.537. PMC 148212. PMID 9862977.
Sun D, Hurley LH (2009-10-23). "Biochemical Techniques for the Characterization of G-Quadruplex Structures: EMSA, DMS Footprinting, and DNA Polymerase Stop Assay". G-Quadruplex DNA. Methods in Molecular Biology. Vol. 608. Humana Press. pp. 65–79. doi:10.1007/978-1-59745-363-9_5. ISBN 9781588299505. PMC 2797547. PMID 20012416.
Paramasivan S, Rujan I, Bolton PH (December 2007). "Circular dichroism of quadruplex DNAs: applications to structure, cation effects and ligand binding". Methods. 43 (4): 324–331. doi:10.1016/j.ymeth.2007.02.009. PMID 17967702.
Mergny JL, Phan AT, Lacroix L (September 1998). "Following G-quartet formation by UV-spectroscopy". FEBS Letters. 435 (1): 74–78. doi:10.1016/s0014-5793(98)01043-6. PMID 9755862. S2CID 1306129.
An N, Fleming AM, Middleton EG, Burrows CJ (October 2014). "Single-molecule investigation of G-quadruplex folds of the human telomere sequence in a protein nanocavity". Proceedings of the National Academy of Sciences of the United States of America. 111 (40): 14325–14331. Bibcode:2014PNAS..11114325A. doi:10.1073/pnas.1415944111. PMC 4209999. PMID 25225404.
Bošković F, Zhu J, Chen K, Keyser UF (November 2019). "Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores". Nano Letters. 19 (11): 7996–8001. Bibcode:2019NanoL..19.7996B. doi:10.1021/acs.nanolett.9b03184. PMID 31577148. S2CID 203638480.
Simone R, Fratta P, Neidle S, Parkinson GN, Isaacs AM (June 2015). "G-quadruplexes: Emerging roles in neurodegenerative diseases and the non-coding transcriptome". FEBS Letters. 589 (14): 1653–68. doi:10.1016/j.febslet.2015.05.003. PMID 25979174.
Ratnavalli E, Brayne C, Dawson K, Hodges JR (June 2002). "The prevalence of frontotemporal dementia". Neurology. 58 (11): 1615–21. doi:10.1212/WNL.58.11.1615. PMID 12058088. S2CID 45904851.
Rutherford NJ, Heckman MG, Dejesus-Hernandez M, Baker MC, Soto-Ortolaza AI, Rayaprolu S, Stewart H, Finger E, Volkening K, Seeley WW, Hatanpaa KJ, Lomen-Hoerth C, Kertesz A, Bigio EH, Lippa C, Knopman DS, Kretzschmar HA, Neumann M, Caselli RJ, White CL, Mackenzie IR, Petersen RC, Strong MJ, Miller BL, Boeve BF, Uitti RJ, Boylan KB, Wszolek ZK, Graff-Radford NR, Dickson DW, Ross OA, Rademakers R (December 2012). "Length of normal alleles of C9ORF72 GGGGCC repeat do not influence disease phenotype". Neurobiology of Aging. 33 (12): 2950.e5–7. doi:10.1016/j.neurobiolaging.2012.07.005. PMC 3617405. PMID 22840558.
Beck J, Poulter M, Hensman D, Rohrer JD, Mahoney CJ, Adamson G, Campbell T, Uphill J, Borg A, Fratta P, Orrell RW, Malaspina A, Rowe J, Brown J, Hodges J, Sidle K, Polke JM, Houlden H, Schott JM, Fox NC, Rossor MN, Tabrizi SJ, Isaacs AM, Hardy J, Warren JD, Collinge J, Mead S (March 2013). "Large C9orf72 hexanucleotide repeat expansions are seen in multiple neurodegenerative syndromes and are more frequent than expected in the UK population". American Journal of Human Genetics. 92 (3): 345–53. doi:10.1016/j.ajhg.2013.01.011. PMC 3591848. PMID 23434116.
Fratta P, Mizielinska S, Nicoll AJ, Zloh M, Fisher EM, Parkinson G, Isaacs AM (December 2012). "C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes". Scientific Reports. 2: 1016. Bibcode:2012NatSR...2E1016F. doi:10.1038/srep01016. PMC 3527825. PMID 23264878.
Reddy K, Zamiri B, Stanley SY, Macgregor RB, Pearson CE (April 2013). "The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures". The Journal of Biological Chemistry. 288 (14): 9860–6. doi:10.1074/jbc.C113.452532. PMC 3617286. PMID 23423380.
Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J (March 2014). "C9orf72 nucleotide repeat structures initiate molecular cascades of disease". Nature. 507 (7491): 195–200. Bibcode:2014Natur.507..195H. doi:10.1038/nature13124. PMC 4046618. PMID 24598541.
Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB (November 2001). "Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function". Cell. 107 (4): 489–499. doi:10.1016/S0092-8674(01)00566-9. PMID 11719189. S2CID 8203054.
Ceman S, O'Donnell WT, Reed M, Patton S, Pohl J, Warren ST (December 2003). "Phosphorylation influences the translation state of FMRP-associated polyribosomes". Human Molecular Genetics. 12 (24): 3295–3305. doi:10.1093/hmg/ddg350. PMID 14570712.
Fähling M, Mrowka R, Steege A, Kirschner KM, Benko E, Förstera B, et al. (February 2009). "Translational regulation of the human achaete-scute homologue-1 by fragile X mental retardation protein". The Journal of Biological Chemistry. 284 (7): 4255–4266. doi:10.1074/jbc.M807354200. PMID 19097999.
Pieretti M, Zhang FP, Fu YH, Warren ST, Oostra BA, Caskey CT, Nelson DL (August 1991). "Absence of expression of the FMR-1 gene in fragile X syndrome". Cell. 66 (4): 817–822. doi:10.1016/0092-8674(91)90125-I. PMID 1878973. S2CID 31455523.
Sutcliffe JS, Nelson DL, Zhang F, Pieretti M, Caskey CT, Saxe D, Warren ST (September 1992). "DNA methylation represses FMR-1 transcription in fragile X syndrome". Human Molecular Genetics. 1 (6): 397–400. doi:10.1093/hmg/1.6.397. PMID 1301913.
Mizielinska S, Isaacs AM (October 2014). "C9orf72 amyotrophic lateral sclerosis and frontotemporal dementia: gain or loss of function?". Current Opinion in Neurology. 27 (5): 515–23. doi:10.1097/WCO.0000000000000130. PMC 4165481. PMID 25188012.
Donnelly CJ, Zhang PW, Pham JT, Haeusler AR, Heusler AR, Mistry NA, Vidensky S, Daley EL, Poth EM, Hoover B, Fines DM, Maragakis N, Tienari PJ, Petrucelli L, Traynor BJ, Wang J, Rigo F, Bennett CF, Blackshaw S, Sattler R, Rothstein JD (October 2013). "RNA toxicity from the ALS/FTD C9ORF72 expansion is mitigated by antisense intervention". Neuron. 80 (2): 415–28. doi:10.1016/j.neuron.2013.10.015. PMC 4098943. PMID 24139042.
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, Drenner K, Artates JW, McAlonis-Downes M, Markmiller S, Hutt KR, Pizzo DP, Cady J, Harms MB, Baloh RH, Vandenberg SR, Yeo GW, Fu XD, Bennett CF, Cleveland DW, Ravits J (November 2013). "Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): E4530–9. Bibcode:2013PNAS..110E4530L. doi:10.1073/pnas.1318835110. PMC 3839752. PMID 24170860.
Sareen D, O'Rourke JG, Meera P, Muhammad AK, Grant S, Simpkinson M, Bell S, Carmona S, Ornelas L, Sahabian A, Gendron T, Petrucelli L, Baughn M, Ravits J, Harms MB, Rigo F, Bennett CF, Otis TS, Svendsen CN, Baloh RH (October 2013). "Targeting RNA foci in iPSC-derived motor neurons from ALS patients with a C9ORF72 repeat expansion". Science Translational Medicine. 5 (208): 208ra149. doi:10.1126/scitranslmed.3007529. PMC 4090945. PMID 24154603.
Wheeler TM, Leger AJ, Pandey SK, MacLeod AR, Nakamori M, Cheng SH, Wentworth BM, Bennett CF, Thornton CA (August 2012). "Targeting nuclear RNA for in vivo correction of myotonic dystrophy". Nature. 488 (7409): 111–5. Bibcode:2012Natur.488..111W. doi:10.1038/nature11362. PMC 4221572. PMID 22859208.
Lee JE, Bennett CF, Cooper TA (March 2012). "RNase H-mediated degradation of toxic RNA in myotonic dystrophy type 1". Proceedings of the National Academy of Sciences of the United States of America. 109 (11): 4221–6. Bibcode:2012PNAS..109.4221L. doi:10.1073/pnas.1117019109. PMC 3306674. PMID 22371589.
Carroll JB, Warby SC, Southwell AL, Doty CN, Greenlee S, Skotte N, Hung G, Bennett CF, Freier SM, Hayden MR (December 2011). "Potent and selective antisense oligonucleotides targeting single-nucleotide polymorphisms in the Huntington disease gene / allele-specific silencing of mutant huntingtin". Molecular Therapy. 19 (12): 2178–85. doi:10.1038/mt.2011.201. PMC 3242664. PMID 21971427.
Gagnon KT, Pendergraff HM, Deleavey GF, Swayze EE, Potier P, Randolph J, Roesch EB, Chattopadhyaya J, Damha MJ, Bennett CF, Montaillier C, Lemaitre M, Corey DR (November 2010). "Allele-selective inhibition of mutant huntingtin expression with antisense oligonucleotides targeting the expanded CAG repeat". Biochemistry. 49 (47): 10166–78. doi:10.1021/bi101208k. PMC 2991413. PMID 21028906.
Cogoi S, Paramasivam M, Filichev V, Géci I, Pedersen EB, Xodo LE (January 2009). "Identification of a new G-quadruplex motif in the KRAS promoter and design of pyrene-modified G4-decoys with antiproliferative activity in pancreatic cancer cells". Journal of Medicinal Chemistry. 52 (2): 564–568. doi:10.1021/jm800874t. PMID 19099510.
Cogoi S, Zorzet S, Rapozzi V, Géci I, Pedersen EB, Xodo LE (April 2013). "MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice". Nucleic Acids Research. 41 (7): 4049–4064. doi:10.1093/nar/gkt127. PMC 3627599. PMID 23471001.
Campbell NH, Patel M, Tofa AB, Ghosh R, Parkinson GN, Neidle S (March 2009). "Selectivity in ligand recognition of G-quadruplex loops". Biochemistry. 48 (8): 1675–80. doi:10.1021/bi802233v. PMID 19173611.
Ohnmacht SA, Neidle S (June 2014). "Small-molecule quadruplex-targeted drug discovery". Bioorganic & Medicinal Chemistry Letters. 24 (12): 2602–12. doi:10.1016/j.bmcl.2014.04.029. PMID 24814531.
Zamiri B, Reddy K, Macgregor RB, Pearson CE (February 2014). "TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins". The Journal of Biological Chemistry. 289 (8): 4653–9. doi:10.1074/jbc.C113.502336. PMC 3931028. PMID 24371143.
Vilar R (2018). "Chapter 12. Nucleic Acid Quadruplexes and Metallo-Drugs". In Sigel A, Sigel H, Freisinger E, Sigel RK (eds.). Metallo-Drugs: Development and Action of Anticancer Agents. Vol. 18. pp. 325–349. doi:10.1515/9783110470734-018. ISBN 9783110470734. PMID 29394031. S2CID 44981950. {{cite book}}: |journal= ignored (help)

ncbi.nlm.nih.gov

Capra JA, Paeschke K, Singh M, Zakian VA (July 2010). "G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae". PLOS Computational Biology. 6 (7): e1000861. Bibcode:2010PLSCB...6E0861C. doi:10.1371/journal.pcbi.1000861. PMC 2908698. PMID 20676380.
Routh ED, Creacy SD, Beerbower PE, Akman SA, Vaughn JP, Smaldino PJ (March 2017). "A G-quadruplex DNA-affinity Approach for Purification of Enzymaticacvly Active G4 Resolvase1". Journal of Visualized Experiments. 121 (121). doi:10.3791/55496. PMC 5409278. PMID 28362374.
Rawal P, Kummarasetti VB, Ravindran R, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (2006). "Genome-wide Prediction of G4 DNA as Regulatory Motifs: Role in Escherichia Coli Global Regulation". Genome Research. 16 (5): 644–655. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Bochman ML, Paeschke K, Zakian VA (November 2012). "DNA secondary structures: stability and function of G-quadruplex structures". Nature Reviews. Genetics. 13 (11): 770–80. doi:10.1038/nrg3296. PMC 3725559. PMID 23032257.
Yadav VK, Abraham JK, Mani P, Kulshrestha R, Chowdhury S (2008). "QuadBase: Genome-Wide Database of G4 DNA--occurrence and Conservation in Human, Chimpanzee, Mouse and Rat Promoters and 146 Microbes". Nucleic Acids Research. 36 (Database): D381–D385. doi:10.1093/nar/gkm781. PMC 2238983. PMID 17962308.
Dhapola P, Chowdhury S (July 2016). "QuadBase2: Web Server for Multiplexed Guanine Quadruplex Mining and Visualization". Nucleic Acids Research. 44 (W1): W277–W283. doi:10.1093/nar/gkw425. PMC 4987949. PMID 27185890.
Rhodes D, Lipps HJ (October 2015). "G-quadruplexes and their regulatory roles in biology". Nucleic Acids Research. 43 (18): 8627–37. doi:10.1093/nar/gkv862. PMC 4605312. PMID 26350216.
Gellert M, Lipsett MN, Davies DR (December 1962). "Helix formation by guanylic acid". Proceedings of the National Academy of Sciences of the United States of America. 48 (12): 2013–8. Bibcode:1962PNAS...48.2013G. doi:10.1073/pnas.48.12.2013. PMC 221115. PMID 13947099.
Müller, Sebastian; Kumari, Sunita; Rodriguez, Raphaël; Balasubramanian, Shankar (10 October 2010). "Small-molecule-mediated G-quadruplex isolation from human cells". Nature Chemistry. 2 (12): 1095–1098. Bibcode:2010NatCh...2.1095M. doi:10.1038/nchem.842. PMC 3119466. PMID 21107376.
Rodriguez, Raphaël; Miller, Kyle M; Forment, Josep V; Bradshaw, Charles R; Nikan, Mehran; Britton, Sébastien; Oelschlaegel, Tobias; Xhemalce, Blerta; Balasubramanian, Shankar; Jackson, Stephen P (5 February 2012). "Small-molecule–induced DNA damage identifies alternative DNA structures in human genes". Nature Chemical Biology. 8 (3): 301–310. doi:10.1038/nchembio.780. PMC 3433707. PMID 22306580.
Burge S, Parkinson GN, Hazel P, Todd AK, Neidle S (2006). "Quadruplex DNA: sequence, topology and structure". Nucleic Acids Research. 34 (19): 5402–15. doi:10.1093/nar/gkl655. PMC 1636468. PMID 17012276.
Cao K, Ryvkin P, Johnson FB (May 2012). "Computational detection and analysis of sequences with duplex-derived interstrand G-quadruplex forming potential". Methods. 57 (1): 3–10. doi:10.1016/j.ymeth.2012.05.002. PMC 3701776. PMID 22652626.
Kudlicki AS (2016). "G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome". PLOS ONE. 11 (1): e0146174. Bibcode:2016PLoSO..1146174K. doi:10.1371/journal.pone.0146174. PMC 4699641. PMID 26727593.
Zheng KW, Chen Z, Hao YH, Tan Z (January 2010). "Molecular crowding creates an essential environment for the formation of stable G-quadruplexes in long double-stranded DNA". Nucleic Acids Research. 38 (1): 327–38. doi:10.1093/nar/gkp898. PMC 2800236. PMID 19858105.
Wang Q, Liu JQ, Chen Z, Zheng KW, Chen CY, Hao YH, Tan Z (August 2011). "G-quadruplex formation at the 3' end of telomere DNA inhibits its extension by telomerase, polymerase and unwinding by helicase". Nucleic Acids Research. 39 (14): 6229–37. doi:10.1093/nar/gkr164. PMC 3152327. PMID 21441540.
Schaffitzel C, Berger I, Postberg J, Hanes J, Lipps HJ, Plückthun A (July 2001). "In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei". Proceedings of the National Academy of Sciences of the United States of America. 98 (15): 8572–7. Bibcode:2001PNAS...98.8572S. doi:10.1073/pnas.141229498. PMC 37477. PMID 11438689.
Kar A, Jones N, Arat NÖ, Fishel R, Griffith JD (June 2018). "Long repeating (TTAGGG) _n single-stranded DNA self-condenses into compact beaded filaments stabilized by G-quadruplex formation". The Journal of Biological Chemistry. 293 (24): 9473–9485. doi:10.1074/jbc.RA118.002158. PMC 6005428. PMID 29674319.
Volná A, Bartas M, Karlický V, Nezval J, Kundrátová K, Pečinka P, et al. (July 2021). "G-Quadruplex in Gene Encoding Large Subunit of Plant RNA Polymerase II: A Billion-Year-Old Story". International Journal of Molecular Sciences. 22 (14): 7381. doi:10.3390/ijms22147381. PMC 8306923. PMID 34299001.
Simonsson T, Pecinka P, Kubista M (March 1998). "DNA tetraplex formation in the control region of c-myc". Nucleic Acids Research. 26 (5): 1167–72. doi:10.1093/nar/26.5.1167. PMC 147388. PMID 9469822.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Huppert JL, Balasubramanian S (14 December 2006). "G-quadruplexes in promoters throughout the human genome". Nucleic Acids Research. 35 (2): 406–13. doi:10.1093/nar/gkl1057. PMC 1802602. PMID 17169996.
Dai J, Dexheimer TS, Chen D, Carver M, Ambrus A, Jones RA, Yang D (February 2006). "An intramolecular G-quadruplex structure with mixed parallel/antiparallel G-strands formed in the human BCL-2 promoter region in solution". Journal of the American Chemical Society. 128 (4): 1096–8. doi:10.1021/ja055636a. PMC 2556172. PMID 16433524.
Fernando H, Reszka AP, Huppert J, Ladame S, Rankin S, Venkitaraman AR, Neidle S, Balasubramanian S (June 2006). "A conserved quadruplex motif located in a transcription activation site of the human c-kit oncogene". Biochemistry. 45 (25): 7854–60. doi:10.1021/bi0601510. PMC 2195898. PMID 16784237.
Huppert JL, Balasubramanian S (2005). "Prevalence of quadruplexes in the human genome". Nucleic Acids Research. 33 (9): 2908–16. doi:10.1093/nar/gki609. PMC 1140081. PMID 15914667.
Rawal P, Kummarasetti VB, Ravindran J, Kumar N, Halder K, Sharma R, Mukerji M, Das SK, Chowdhury S (May 2006). "Genome-wide prediction of G4 DNA as regulatory motifs: role in Escherichia coli global regulation". Genome Research. 16 (5): 644–55. doi:10.1101/gr.4508806. PMC 1457047. PMID 16651665.
Kamath-Loeb A, Loeb LA, Fry M (2012). Cotterill S (ed.). "The Werner syndrome protein is distinguished from the Bloom syndrome protein by its capacity to tightly bind diverse DNA structures". PLOS ONE. 7 (1): e30189. Bibcode:2012PLoSO...730189K. doi:10.1371/journal.pone.0030189. PMC 3260238. PMID 22272300.
Thakur RK, Kumar P, Halder K, Verma A, Kar A, Parent JL, Basundra R, Kumar A, Chowdhury S (January 2009). "Metastases Suppressor NM23-H2 Interaction With G-quadruplex DNA Within c-MYC Promoter Nuclease Hypersensitive Element Induces c-MYC Expression". Nucleic Acids Research. 37 (1): 172–183. doi:10.1093/nar/gkn919. PMC 2615625. PMID 19033359.
Saha D, Singh A, Hussain T, Srivastava V, Sengupta S, Kar A, Dhapola P, Ummanni R, Chowdhury S (July 2017). "Epigenetic Suppression of Human Telomerase ( hTERT) Is Mediated by the Metastasis Suppressor NME2 in a G-quadruplex-dependent Fashion". The Journal of Biological Chemistry. 292 (37): 15205–15215. doi:10.1074/jbc.M117.792077. PMC 5602382. PMID 28717007.
Mukherjee AK, Sharma S, Bagri S, Kutum R, Kumar P, Hussain A, Singh P, Saha D, Kar A, Dash D, Chowdhury S (November 2019). "Telomere Repeat-Binding Factor 2 Binds Extensively to Extra-Telomeric G-quadruplexes and Regulates the Epigenetic Status of Several Gene Promoters". The Journal of Biological Chemistry. 294 (47): 17709–17722. doi:10.1074/jbc.RA119.008687. PMC 6879327. PMID 31575660.
Maizels N, Gray LT (April 2013). Rosenberg SM (ed.). "The G4 genome". PLOS Genetics. 9 (4): e1003468. doi:10.1371/journal.pgen.1003468. PMC 3630100. PMID 23637633.
Biffi G, Tannahill D, McCafferty J, Balasubramanian S (March 2013). "Quantitative visualization of DNA G-quadruplex structures in human cells". Nature Chemistry. 5 (3): 182–6. Bibcode:2013NatCh...5..182B. doi:10.1038/nchem.1548. PMC 3622242. PMID 23422559.
Chen MC, Tippana R, Demeshkina NA, Murat P, Balasubramanian S, Myong S, Ferré-D'Amaré AR (June 2018). "Structural basis of G-quadruplex unfolding by the DEAH/RHA helicase DHX36". Nature. 558 (7710): 465–469. Bibcode:2018Natur.558..465C. doi:10.1038/s41586-018-0209-9. PMC 6261253. PMID 29899445.
Rice C, Skordalakes E (2016). "Structure and function of the telomeric CST complex". Computational and Structural Biotechnology Journal. 14: 161–7. doi:10.1016/j.csbj.2016.04.002. PMC 4872678. PMID 27239262.
Roychoudhury S, Pramanik S, Harris HL, Tarpley M, Sarkar A, Spagnol G, et al. (May 2020). "Endogenous oxidized DNA bases and APE1 regulate the formation of G-quadruplex structures in the genome". Proceedings of the National Academy of Sciences of the United States of America. 117 (21): 11409–11420. Bibcode:2020PNAS..11711409R. doi:10.1073/pnas.1912355117. PMC 7260947. PMID 32404420.
Canugovi C, Shamanna RA, Croteau DL, Bohr VA (June 2014). "Base excision DNA repair levels in mitochondrial lysates of Alzheimer's disease". Neurobiology of Aging. 35 (6): 1293–1300. doi:10.1016/j.neurobiolaging.2014.01.004. PMC 5576885. PMID 24485507.
Sun D, Hurley LH (May 2009). "The importance of negative superhelicity in inducing the formation of G-quadruplex and i-motif structures in the c-Myc promoter: implications for drug targeting and control of gene expression". Journal of Medicinal Chemistry. 52 (9): 2863–2874. doi:10.1021/jm900055s. PMC 2757002. PMID 19385599.
Hill JW, Hazra TK, Izumi T, Mitra S (January 2001). "Stimulation of human 8-oxoguanine-DNA glycosylase by AP-endonuclease: potential coordination of the initial steps in base excision repair". Nucleic Acids Research. 29 (2): 430–438. doi:10.1093/nar/29.2.430. PMC 29662. PMID 11139613.
Poetsch AR (2020-01-07). "The genomics of oxidative DNA damage, repair, and resulting mutagenesis". Computational and Structural Biotechnology Journal. 18: 207–219. doi:10.1016/j.csbj.2019.12.013. PMC 6974700. PMID 31993111.
Fleming AM, Burrows CJ (October 2017). "8-Oxo-7,8-dihydro-2'-deoxyguanosine and abasic site tandem lesions are oxidation prone yielding hydantoin products that strongly destabilize duplex DNA". Organic & Biomolecular Chemistry. 15 (39): 8341–8353. doi:10.1039/C7OB02096A. PMC 5636683. PMID 28936535.
Kitsera N, Rodriguez-Alvarez M, Emmert S, Carell T, Khobta A (September 2019). "Nucleotide excision repair of abasic DNA lesions". Nucleic Acids Research. 47 (16): 8537–8547. doi:10.1093/nar/gkz558. PMC 6895268. PMID 31226203.
Roychoudhury S, Nath S, Song H, Hegde ML, Bellot LJ, Mantha AK, et al. (March 2017). "Human Apurinic/Apyrimidinic Endonuclease (APE1) Is Acetylated at DNA Damage Sites in Chromatin, and Acetylation Modulates Its DNA Repair Activity". Molecular and Cellular Biology. 37 (6). doi:10.1128/mcb.00401-16. PMC 5335514. PMID 27994014.
Chattopadhyay R, Das S, Maiti AK, Boldogh I, Xie J, Hazra TK, et al. (December 2008). "Regulatory role of human AP-endonuclease (APE1/Ref-1) in YB-1-mediated activation of the multidrug resistance gene MDR1". Molecular and Cellular Biology. 28 (23): 7066–7080. doi:10.1128/mcb.00244-08. PMC 2593380. PMID 18809583.
Bhakat KK, Izumi T, Yang SH, Hazra TK, Mitra S (December 2003). "Role of acetylated human AP-endonuclease (APE1/Ref-1) in regulation of the parathyroid hormone gene". The EMBO Journal. 22 (23): 6299–6309. doi:10.1093/emboj/cdg595. PMC 291836. PMID 14633989.
Yamamori T, DeRicco J, Naqvi A, Hoffman TA, Mattagajasingh I, Kasuno K, et al. (January 2010). "SIRT1 deacetylates APE1 and regulates cellular base excision repair". Nucleic Acids Research. 38 (3): 832–845. doi:10.1093/nar/gkp1039. PMC 2817463. PMID 19934257.
Chen Y, Yang D (September 2012). Sequence, stability, and structure of G-quadruplexes and their interactions with drugs. Vol. Chapter 17. pp. 17.5.1–17.5.17. doi:10.1002/0471142700.nc1705s50. ISBN 978-0471142706. PMC 3463244. PMID 22956454. {{cite book}}: |journal= ignored (help)
Brooks TA, Kendrick S, Hurley L (September 2010). "Making sense of G-quadruplex and i-motif functions in oncogene promoters". The FEBS Journal. 277 (17): 3459–69. doi:10.1111/j.1742-4658.2010.07759.x. PMC 2971675. PMID 20670278.
Sun D, Guo K, Rusche JJ, Hurley LH (2005-10-12). "Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents". Nucleic Acids Research. 33 (18): 6070–80. doi:10.1093/nar/gki917. PMC 1266068. PMID 16239639.
Hussain T, Saha D, Purohit G, Mukherjee AK, Sharma S, Sengupta S, Dhapola P, Maji B, Vedagopuram S, Horikoshi NT, Horikoshi N, Pandita RK, Bhattacharya S, Bajaj A, Riou JF, Pandita TK, Chowdhury S (September 2017). "Transcription Regulation of CDKN1A (p21/CIP1/WAF1) by TRF2 Is Epigenetically Controlled Through the REST Repressor Complex". Scientific Reports. 7 (1): 11541. Bibcode:2017NatSR...711541H. doi:10.1038/s41598-017-11177-1. PMC 5599563. PMID 28912501.
Guo K, Pourpak A, Beetz-Rogers K, Gokhale V, Sun D, Hurley LH (August 2007). "Formation of pseudosymmetrical G-quadruplex and i-motif structures in the proximal promoter region of the RET oncogene". Journal of the American Chemical Society. 129 (33): 10220–8. doi:10.1021/ja072185g. PMC 2566970. PMID 17672459.
Qin Y, Rezler EM, Gokhale V, Sun D, Hurley LH (2007-11-26). "Characterization of the G-quadruplexes in the duplex nuclease hypersensitive element of the PDGF-A promoter and modulation of PDGF-A promoter activity by TMPyP4". Nucleic Acids Research. 35 (22): 7698–713. doi:10.1093/nar/gkm538. PMC 2190695. PMID 17984069.
Ohnmacht SA, Marchetti C, Gunaratnam M, Besser RJ, Haider SM, Di Vita G, Lowe HL, Mellinas-Gomez M, Diocou S, Robson M, Šponer J, Islam B, Pedley RB, Hartley JA, Neidle S (June 2015). "A G-quadruplex-binding compound showing anti-tumour activity in an in vivo model for pancreatic cancer". Scientific Reports. 5: 11385. Bibcode:2015NatSR...511385O. doi:10.1038/srep11385. PMC 4468576. PMID 26077929.
Siddiqui-Jain A, Grand CL, Bearss DJ, Hurley LH (September 2002). "Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription". Proceedings of the National Academy of Sciences of the United States of America. 99 (18): 11593–8. Bibcode:2002PNAS...9911593S. doi:10.1073/pnas.182256799. PMC 129314. PMID 12195017.
Todd AK, Johnston M, Neidle S (2005). "Highly prevalent putative quadruplex sequence motifs in human DNA". Nucleic Acids Research. 33 (9): 2901–7. doi:10.1093/nar/gki553. PMC 1140077. PMID 15914666.
Guo K, Gokhale V, Hurley LH, Sun D (August 2008). "Intramolecularly folded G-quadruplex and i-motif structures in the proximal promoter of the vascular endothelial growth factor gene". Nucleic Acids Research. 36 (14): 4598–608. doi:10.1093/nar/gkn380. PMC 2504309. PMID 18614607.
Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Bartas, Martin; Fojta, Miroslav; Šťastný, Jiří; Mergny, Jean-Louis (2019-09-15). Hancock, John (ed.). "G4Hunter web application: a web server for G-quadruplex prediction". Bioinformatics. 35 (18): 3493–3495. doi:10.1093/bioinformatics/btz087. ISSN 1367-4803. PMC 6748775. PMID 30721922.
Han H, Hurley LH, Salazar M (January 1999). "A DNA polymerase stop assay for G-quadruplex-interactive compounds". Nucleic Acids Research. 27 (2): 537–542. doi:10.1093/nar/27.2.537. PMC 148212. PMID 9862977.
Sun D, Hurley LH (2009-10-23). "Biochemical Techniques for the Characterization of G-Quadruplex Structures: EMSA, DMS Footprinting, and DNA Polymerase Stop Assay". G-Quadruplex DNA. Methods in Molecular Biology. Vol. 608. Humana Press. pp. 65–79. doi:10.1007/978-1-59745-363-9_5. ISBN 9781588299505. PMC 2797547. PMID 20012416.
An N, Fleming AM, Middleton EG, Burrows CJ (October 2014). "Single-molecule investigation of G-quadruplex folds of the human telomere sequence in a protein nanocavity". Proceedings of the National Academy of Sciences of the United States of America. 111 (40): 14325–14331. Bibcode:2014PNAS..11114325A. doi:10.1073/pnas.1415944111. PMC 4209999. PMID 25225404.
"C9orf72 chromosome 9 open reading frame 72 [Homo sapiens] - Gene]". National Center for Biotechnology Information. U.S. National Library of Medicine.
Rutherford NJ, Heckman MG, Dejesus-Hernandez M, Baker MC, Soto-Ortolaza AI, Rayaprolu S, Stewart H, Finger E, Volkening K, Seeley WW, Hatanpaa KJ, Lomen-Hoerth C, Kertesz A, Bigio EH, Lippa C, Knopman DS, Kretzschmar HA, Neumann M, Caselli RJ, White CL, Mackenzie IR, Petersen RC, Strong MJ, Miller BL, Boeve BF, Uitti RJ, Boylan KB, Wszolek ZK, Graff-Radford NR, Dickson DW, Ross OA, Rademakers R (December 2012). "Length of normal alleles of C9ORF72 GGGGCC repeat do not influence disease phenotype". Neurobiology of Aging. 33 (12): 2950.e5–7. doi:10.1016/j.neurobiolaging.2012.07.005. PMC 3617405. PMID 22840558.
Beck J, Poulter M, Hensman D, Rohrer JD, Mahoney CJ, Adamson G, Campbell T, Uphill J, Borg A, Fratta P, Orrell RW, Malaspina A, Rowe J, Brown J, Hodges J, Sidle K, Polke JM, Houlden H, Schott JM, Fox NC, Rossor MN, Tabrizi SJ, Isaacs AM, Hardy J, Warren JD, Collinge J, Mead S (March 2013). "Large C9orf72 hexanucleotide repeat expansions are seen in multiple neurodegenerative syndromes and are more frequent than expected in the UK population". American Journal of Human Genetics. 92 (3): 345–53. doi:10.1016/j.ajhg.2013.01.011. PMC 3591848. PMID 23434116.
Fratta P, Mizielinska S, Nicoll AJ, Zloh M, Fisher EM, Parkinson G, Isaacs AM (December 2012). "C9orf72 hexanucleotide repeat associated with amyotrophic lateral sclerosis and frontotemporal dementia forms RNA G-quadruplexes". Scientific Reports. 2: 1016. Bibcode:2012NatSR...2E1016F. doi:10.1038/srep01016. PMC 3527825. PMID 23264878.
Reddy K, Zamiri B, Stanley SY, Macgregor RB, Pearson CE (April 2013). "The disease-associated r(GGGGCC)n repeat from the C9orf72 gene forms tract length-dependent uni- and multimolecular RNA G-quadruplex structures". The Journal of Biological Chemistry. 288 (14): 9860–6. doi:10.1074/jbc.C113.452532. PMC 3617286. PMID 23423380.
Haeusler AR, Donnelly CJ, Periz G, Simko EA, Shaw PG, Kim MS, Maragakis NJ, Troncoso JC, Pandey A, Sattler R, Rothstein JD, Wang J (March 2014). "C9orf72 nucleotide repeat structures initiate molecular cascades of disease". Nature. 507 (7491): 195–200. Bibcode:2014Natur.507..195H. doi:10.1038/nature13124. PMC 4046618. PMID 24598541.
Mizielinska S, Isaacs AM (October 2014). "C9orf72 amyotrophic lateral sclerosis and frontotemporal dementia: gain or loss of function?". Current Opinion in Neurology. 27 (5): 515–23. doi:10.1097/WCO.0000000000000130. PMC 4165481. PMID 25188012.
Donnelly CJ, Zhang PW, Pham JT, Haeusler AR, Heusler AR, Mistry NA, Vidensky S, Daley EL, Poth EM, Hoover B, Fines DM, Maragakis N, Tienari PJ, Petrucelli L, Traynor BJ, Wang J, Rigo F, Bennett CF, Blackshaw S, Sattler R, Rothstein JD (October 2013). "RNA toxicity from the ALS/FTD C9ORF72 expansion is mitigated by antisense intervention". Neuron. 80 (2): 415–28. doi:10.1016/j.neuron.2013.10.015. PMC 4098943. PMID 24139042.
Lagier-Tourenne C, Baughn M, Rigo F, Sun S, Liu P, Li HR, Jiang J, Watt AT, Chun S, Katz M, Qiu J, Sun Y, Ling SC, Zhu Q, Polymenidou M, Drenner K, Artates JW, McAlonis-Downes M, Markmiller S, Hutt KR, Pizzo DP, Cady J, Harms MB, Baloh RH, Vandenberg SR, Yeo GW, Fu XD, Bennett CF, Cleveland DW, Ravits J (November 2013). "Targeted degradation of sense and antisense C9orf72 RNA foci as therapy for ALS and frontotemporal degeneration". Proceedings of the National Academy of Sciences of the United States of America. 110 (47): E4530–9. Bibcode:2013PNAS..110E4530L. doi:10.1073/pnas.1318835110. PMC 3839752. PMID 24170860.
Sareen D, O'Rourke JG, Meera P, Muhammad AK, Grant S, Simpkinson M, Bell S, Carmona S, Ornelas L, Sahabian A, Gendron T, Petrucelli L, Baughn M, Ravits J, Harms MB, Rigo F, Bennett CF, Otis TS, Svendsen CN, Baloh RH (October 2013). "Targeting RNA foci in iPSC-derived motor neurons from ALS patients with a C9ORF72 repeat expansion". Science Translational Medicine. 5 (208): 208ra149. doi:10.1126/scitranslmed.3007529. PMC 4090945. PMID 24154603.
Wheeler TM, Leger AJ, Pandey SK, MacLeod AR, Nakamori M, Cheng SH, Wentworth BM, Bennett CF, Thornton CA (August 2012). "Targeting nuclear RNA for in vivo correction of myotonic dystrophy". Nature. 488 (7409): 111–5. Bibcode:2012Natur.488..111W. doi:10.1038/nature11362. PMC 4221572. PMID 22859208.
Lee JE, Bennett CF, Cooper TA (March 2012). "RNase H-mediated degradation of toxic RNA in myotonic dystrophy type 1". Proceedings of the National Academy of Sciences of the United States of America. 109 (11): 4221–6. Bibcode:2012PNAS..109.4221L. doi:10.1073/pnas.1117019109. PMC 3306674. PMID 22371589.
Carroll JB, Warby SC, Southwell AL, Doty CN, Greenlee S, Skotte N, Hung G, Bennett CF, Freier SM, Hayden MR (December 2011). "Potent and selective antisense oligonucleotides targeting single-nucleotide polymorphisms in the Huntington disease gene / allele-specific silencing of mutant huntingtin". Molecular Therapy. 19 (12): 2178–85. doi:10.1038/mt.2011.201. PMC 3242664. PMID 21971427.
Gagnon KT, Pendergraff HM, Deleavey GF, Swayze EE, Potier P, Randolph J, Roesch EB, Chattopadhyaya J, Damha MJ, Bennett CF, Montaillier C, Lemaitre M, Corey DR (November 2010). "Allele-selective inhibition of mutant huntingtin expression with antisense oligonucleotides targeting the expanded CAG repeat". Biochemistry. 49 (47): 10166–78. doi:10.1021/bi101208k. PMC 2991413. PMID 21028906.
Cogoi S, Zorzet S, Rapozzi V, Géci I, Pedersen EB, Xodo LE (April 2013). "MAZ-binding G4-decoy with locked nucleic acid and twisted intercalating nucleic acid modifications suppresses KRAS in pancreatic cancer cells and delays tumor growth in mice". Nucleic Acids Research. 41 (7): 4049–4064. doi:10.1093/nar/gkt127. PMC 3627599. PMID 23471001.
Zamiri B, Reddy K, Macgregor RB, Pearson CE (February 2014). "TMPyP4 porphyrin distorts RNA G-quadruplex structures of the disease-associated r(GGGGCC)n repeat of the C9orf72 gene and blocks interaction of RNA-binding proteins". The Journal of Biological Chemistry. 289 (8): 4653–9. doi:10.1074/jbc.C113.502336. PMC 3931028. PMID 24371143.

oup.com

academic.oup.com

Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Bartas, Martin; Fojta, Miroslav; Šťastný, Jiří; Mergny, Jean-Louis (2019-09-15). Hancock, John (ed.). "G4Hunter web application: a web server for G-quadruplex prediction". Bioinformatics. 35 (18): 3493–3495. doi:10.1093/bioinformatics/btz087. ISSN 1367-4803. PMC 6748775. PMID 30721922.

semanticscholar.org

api.semanticscholar.org

Sundquist WI, Klug A (December 1989). "Telomeric DNA dimerizes by formation of guanine tetrads between hairpin loops". Nature. 342 (6251): 825–9. Bibcode:1989Natur.342..825S. doi:10.1038/342825a0. PMID 2601741. S2CID 4357161.
Sen D, Gilbert W (July 1988). "Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis". Nature. 334 (6180): 364–6. Bibcode:1988Natur.334..364S. doi:10.1038/334364a0. PMID 3393228. S2CID 4351855.
Henderson E, Hardin CC, Walk SK, Tinoco I, Blackburn EH (December 1987). "Telomeric DNA oligonucleotides form novel intramolecular structures containing guanine-guanine base pairs". Cell. 51 (6): 899–908. doi:10.1016/0092-8674(87)90577-0. PMID 3690664. S2CID 37343642.
Simonsson T (April 2001). "G-quadruplex DNA structures--variations on a theme". Biological Chemistry. 382 (4): 621–8. doi:10.1515/BC.2001.073. PMID 11405224. S2CID 43536134.
Paeschke K, Simonsson T, Postberg J, Rhodes D, Lipps HJ (October 2005). "Telomere end-binding proteins control the formation of G-quadruplex DNA structures in vivo". Nature Structural & Molecular Biology. 12 (10): 847–54. doi:10.1038/nsmb982. PMID 16142245. S2CID 6079323.
Hänsel-Hertsch R, Beraldi D, Lensing SV, Marsico G, Zyner K, Parry A, et al. (October 2016). "G-quadruplex structures mark human regulatory chromatin". Nature Genetics. 48 (10): 1267–1272. doi:10.1038/ng.3662. PMID 27618450. S2CID 20967177.
Poetsch AR (2020). "AP-Seq: A Method to Measure Apurinic Sites and Small Base Adducts Genome-Wide". The Nucleus. Methods in Molecular Biology. Vol. 2175. Clifton, N.J. pp. 95–108. doi:10.1007/978-1-0716-0763-3_8. ISBN 978-1-0716-0762-6. ISSN 1940-6029. PMID 32681486. S2CID 220631202.{{cite book}}: CS1 maint: location missing publisher (link)
Sharma S, Mukherjee AK, Roy SS, Bagri S, Lier S, Verma M, Sengupta A, Kumar M, Nesse G, Pandey DP, Chowdhury S (January 2020). "Human Telomerase Expression is under Direct Transcriptional Control of the Telomere-binding-factor TRF2" (PDF). bioRxiv. doi:10.1101/2020.01.15.907626. S2CID 214472968.
Chilakamarthi U, Koteshwar D, Jinka S, Vamsi Krishna N, Sridharan K, Nagesh N, Giribabu L (November 2018). "Novel Amphiphilic G-Quadruplex Binding Synthetic Derivative of TMPyP4 and Its Effect on Cancer Cell Proliferation and Apoptosis Induction". Biochemistry. 57 (46): 6514–6527. doi:10.1021/acs.biochem.8b00843. PMID 30369235. S2CID 53093959.
Mirkin SM, Lyamichev VI, Drushlyak KN, Dobrynin VN, Filippov SA, Frank-Kamenetskii MD (1987). "DNA H form requires a homopurine-homopyrimidine mirror repeat". Nature. 330 (6147): 495–7. Bibcode:1987Natur.330..495M. doi:10.1038/330495a0. PMID 2825028. S2CID 4360764.
Garant, Jean-Michel; Perreault, Jean-Pierre; Scott, Michelle S. (2018). "G4RNA screener web server: User focused interface for RNA G-quadruplex prediction". Biochimie. 151: 115–118. doi:10.1016/j.biochi.2018.06.002. PMID 29885355. S2CID 47005625.
Mergny JL, Phan AT, Lacroix L (September 1998). "Following G-quartet formation by UV-spectroscopy". FEBS Letters. 435 (1): 74–78. doi:10.1016/s0014-5793(98)01043-6. PMID 9755862. S2CID 1306129.
Bošković F, Zhu J, Chen K, Keyser UF (November 2019). "Monitoring G-Quadruplex Formation with DNA Carriers and Solid-State Nanopores". Nano Letters. 19 (11): 7996–8001. Bibcode:2019NanoL..19.7996B. doi:10.1021/acs.nanolett.9b03184. PMID 31577148. S2CID 203638480.
Ratnavalli E, Brayne C, Dawson K, Hodges JR (June 2002). "The prevalence of frontotemporal dementia". Neurology. 58 (11): 1615–21. doi:10.1212/WNL.58.11.1615. PMID 12058088. S2CID 45904851.
Darnell JC, Jensen KB, Jin P, Brown V, Warren ST, Darnell RB (November 2001). "Fragile X mental retardation protein targets G quartet mRNAs important for neuronal function". Cell. 107 (4): 489–499. doi:10.1016/S0092-8674(01)00566-9. PMID 11719189. S2CID 8203054.
Pieretti M, Zhang FP, Fu YH, Warren ST, Oostra BA, Caskey CT, Nelson DL (August 1991). "Absence of expression of the FMR-1 gene in fragile X syndrome". Cell. 66 (4): 817–822. doi:10.1016/0092-8674(91)90125-I. PMID 1878973. S2CID 31455523.
Vilar R (2018). "Chapter 12. Nucleic Acid Quadruplexes and Metallo-Drugs". In Sigel A, Sigel H, Freisinger E, Sigel RK (eds.). Metallo-Drugs: Development and Action of Anticancer Agents. Vol. 18. pp. 325–349. doi:10.1515/9783110470734-018. ISBN 9783110470734. PMID 29394031. S2CID 44981950. {{cite book}}: |journal= ignored (help)

ucl.ac.uk

discovery.ucl.ac.uk

Neidle S (July 2016). "Quadruplex Nucleic Acids as Novel Therapeutic Targets" (PDF). Journal of Medicinal Chemistry. 59 (13): 5987–6011. doi:10.1021/acs.jmedchem.5b01835. PMID 26840940.

worldcat.org

search.worldcat.org

Poetsch AR (2020). "AP-Seq: A Method to Measure Apurinic Sites and Small Base Adducts Genome-Wide". The Nucleus. Methods in Molecular Biology. Vol. 2175. Clifton, N.J. pp. 95–108. doi:10.1007/978-1-0716-0763-3_8. ISBN 978-1-0716-0762-6. ISSN 1940-6029. PMID 32681486. S2CID 220631202.{{cite book}}: CS1 maint: location missing publisher (link)
Brázda, Václav; Kolomazník, Jan; Lýsek, Jiří; Bartas, Martin; Fojta, Miroslav; Šťastný, Jiří; Mergny, Jean-Louis (2019-09-15). Hancock, John (ed.). "G4Hunter web application: a web server for G-quadruplex prediction". Bioinformatics. 35 (18): 3493–3495. doi:10.1093/bioinformatics/btz087. ISSN 1367-4803. PMC 6748775. PMID 30721922.