Human interactome (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Human interactome" in English language version.

refsWebsite

Global rank English rank

47nih.gov

4^th place

30doi.org

2^nd place

9harvard.edu

18^th place

17^th place

7semanticscholar.org

11^th place

8^th place

1arxiv.org

69^th place

59^th place

1handle.net

102^nd place

76^th place

arxiv.org

Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A (March 2006). "ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context". BMC Bioinformatics. 7 (Suppl 1): S7. arXiv:q-bio/0410037. doi:10.1186/1471-2105-7-S1-S7. PMC 1810318. PMID 16723010.

doi.org

Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C (May 2008). "Estimating the size of the human interactome". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6959–64. doi:10.1073/pnas.0708078105. PMC 2383957. PMID 18474861.
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA (January 2005). "Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders". Nucleic Acids Research. 33 (Database issue): D514–7. doi:10.1093/nar/gki033. PMC 539987. PMID 15608251.
Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN (January 2014). "The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine". Human Genetics. 133 (1): 1–9. doi:10.1007/s00439-013-1358-4. PMC 3898141. PMID 24077912.
Chuang HY, Hofree M, Ideker T (2010). "A decade of systems biology". Annual Review of Cell and Developmental Biology. 26: 721–44. doi:10.1146/annurev-cellbio-100109-104122. PMC 3371392. PMID 20604711.
Blow N (July 2009). "Systems biology: Untangling the protein web". Nature. 460 (7253): 415–8. Bibcode:2009Natur.460..415B. doi:10.1038/460415a. PMID 19606149.
Vidal M, Cusick ME, Barabási AL (March 2011). "Interactome networks and human disease". Cell. 144 (6): 986–98. doi:10.1016/j.cell.2011.02.016. PMC 3102045. PMID 21414488.
Amaral LA (May 2008). "A truer measure of our ignorance". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6795–6. Bibcode:2008PNAS..105.6795A. doi:10.1073/pnas.0802459105. PMC 2383987. PMID 18474865.
Bork P, Jensen LJ, von Mering C, Ramani AK, Lee I, Marcotte EM (June 2004). "Protein interaction networks from yeast to human". Current Opinion in Structural Biology. 14 (3): 292–9. doi:10.1016/j.sbi.2004.05.003. PMID 15193308.
Konstantinos T, Dimitrakopoulos C, Kleftogiannis D, Charalampos M, Stergios P, Likothanassis S, Seferina M (2014). "HINT-KB: The Human Interactome Knowledge Base". Artificial Intelligence Review. 42 (3): 427–443. doi:10.1007/s10462-013-9409-8. S2CID 16376962.
Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, Chang C, Hirschman J, Theesfeld C, Rust J, Livstone MS, Dolinski K, Tyers M (January 2015). "The BioGRID interaction database: 2015 update". Nucleic Acids Research. 43 (Database issue): D470–8. doi:10.1093/nar/gku1204. PMC 4383984. PMID 25428363.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A (March 2006). "ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context". BMC Bioinformatics. 7 (Suppl 1): S7. arXiv:q-bio/0410037. doi:10.1186/1471-2105-7-S1-S7. PMC 1810318. PMID 16723010.
Jaeger S, Gaudan S, Leser U, Rebholz-Schuhmann D (July 2008). "Integrating protein-protein interactions and text mining for protein function prediction". BMC Bioinformatics. 9 (Suppl 8): S2. doi:10.1186/1471-2105-9-S8-S2. PMC 2500093. PMID 18673526.
Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Reimand J, Bader GD (2013). "Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers". Molecular Systems Biology. 9: 637. doi:10.1038/msb.2012.68. PMC 3564258. PMID 23340843.
Rolland T, Taşan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, et al. (November 2014). "A proteome-scale map of the human interactome network". Cell. 159 (5): 1212–1226. doi:10.1016/j.cell.2014.10.050. PMC 4266588. PMID 25416956.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, et al. (October 2008). "High-quality binary protein interaction map of the yeast interactome network". Science. 322 (5898): 104–10. Bibcode:2008Sci...322..104Y. doi:10.1126/science.1158684. PMC 2746753. PMID 18719252.
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, et al. (December 2003). "A protein interaction map of Drosophila melanogaster". Science. 302 (5651): 1727–36. Bibcode:2003Sci...302.1727G. doi:10.1126/science.1090289. PMID 14605208. S2CID 1642026.
Xenarios I, Salwínski L, Duan XJ, Higney P, Kim SM, Eisenberg D (January 2002). "DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions". Nucleic Acids Research. 30 (1): 303–5. doi:10.1093/nar/30.1.303. PMC 99070. PMID 11752321.
Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY (May 2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi:10.1016/j.cell.2006.03.032. PMID 16713569.
Chang J, Gilman SR, Chiang AH, Sanders SJ, Vitkup D (February 2015). "Genotype to phenotype relationships in autism spectrum disorders". Nature Neuroscience. 18 (2): 191–8. doi:10.1038/nn.3907. PMC 4397214. PMID 25531569.
Cancer Genome Atlas Research Network (September 2012). "Comprehensive genomic characterization of squamous cell lung cancers". Nature. 489 (7417): 519–25. Bibcode:2012Natur.489..519T. doi:10.1038/nature11404. PMC 3466113. PMID 22960745.
Gulati S, Cheng TM, Bates PA (August 2013). "Cancer networks and beyond: interpreting mutations using the human interactome and protein structure". Seminars in Cancer Biology. 23 (4): 219–26. doi:10.1016/j.semcancer.2013.05.002. PMID 23680723.
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL (February 2009). "Dynamic modularity in protein interaction networks predicts breast cancer outcome". Nature Biotechnology. 27 (2): 199–204. doi:10.1038/nbt.1522. PMID 19182785. S2CID 11594017.
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (September 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. hdl:11858/00-001M-0000-0010-8592-0. PMID 16169070. S2CID 8235923.
Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME (January 2007). "UniHI: an entry gate to the human protein interactome". Nucleic Acids Research. 35 (Database issue): D590–4. doi:10.1093/nar/gkl817. PMC 1781159. PMID 17158159.
Futschik ME, Chaurasia G, Herzel H (March 2007). "Comparison of human protein-protein interaction maps". Bioinformatics. 23 (5): 605–11. doi:10.1093/bioinformatics/btl683. PMID 17237052.
Tyagi M, Hashimoto K, Shoemaker BA, Wuchty S, Panchenko AR (March 2012). "Large-scale mapping of human protein interactome using structural complexes". EMBO Reports. 13 (3): 266–71. doi:10.1038/embor.2011.261. PMC 3296913. PMID 22261719.
De Las Rivas J, Fontanillo C (June 2010). "Protein-protein interactions essentials: key concepts to building and analyzing interactome networks". PLOS Computational Biology. 6 (6): e1000807. Bibcode:2010PLSCB...6E0807D. doi:10.1371/journal.pcbi.1000807. PMC 2891586. PMID 20589078.

handle.net

hdl.handle.net

Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (September 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. hdl:11858/00-001M-0000-0010-8592-0. PMID 16169070. S2CID 8235923.

harvard.edu

ui.adsabs.harvard.edu

Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Blow N (July 2009). "Systems biology: Untangling the protein web". Nature. 460 (7253): 415–8. Bibcode:2009Natur.460..415B. doi:10.1038/460415a. PMID 19606149.
Amaral LA (May 2008). "A truer measure of our ignorance". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6795–6. Bibcode:2008PNAS..105.6795A. doi:10.1073/pnas.0802459105. PMC 2383987. PMID 18474865.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, et al. (October 2008). "High-quality binary protein interaction map of the yeast interactome network". Science. 322 (5898): 104–10. Bibcode:2008Sci...322..104Y. doi:10.1126/science.1158684. PMC 2746753. PMID 18719252.
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, et al. (December 2003). "A protein interaction map of Drosophila melanogaster". Science. 302 (5651): 1727–36. Bibcode:2003Sci...302.1727G. doi:10.1126/science.1090289. PMID 14605208. S2CID 1642026.
Cancer Genome Atlas Research Network (September 2012). "Comprehensive genomic characterization of squamous cell lung cancers". Nature. 489 (7417): 519–25. Bibcode:2012Natur.489..519T. doi:10.1038/nature11404. PMC 3466113. PMID 22960745.
De Las Rivas J, Fontanillo C (June 2010). "Protein-protein interactions essentials: key concepts to building and analyzing interactome networks". PLOS Computational Biology. 6 (6): e1000807. Bibcode:2010PLSCB...6E0807D. doi:10.1371/journal.pcbi.1000807. PMC 2891586. PMID 20589078.

nih.gov

pubmed.ncbi.nlm.nih.gov

Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C (May 2008). "Estimating the size of the human interactome". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6959–64. doi:10.1073/pnas.0708078105. PMC 2383957. PMID 18474861.
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA (January 2005). "Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders". Nucleic Acids Research. 33 (Database issue): D514–7. doi:10.1093/nar/gki033. PMC 539987. PMID 15608251.
Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN (January 2014). "The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine". Human Genetics. 133 (1): 1–9. doi:10.1007/s00439-013-1358-4. PMC 3898141. PMID 24077912.
Chuang HY, Hofree M, Ideker T (2010). "A decade of systems biology". Annual Review of Cell and Developmental Biology. 26: 721–44. doi:10.1146/annurev-cellbio-100109-104122. PMC 3371392. PMID 20604711.
Blow N (July 2009). "Systems biology: Untangling the protein web". Nature. 460 (7253): 415–8. Bibcode:2009Natur.460..415B. doi:10.1038/460415a. PMID 19606149.
Vidal M, Cusick ME, Barabási AL (March 2011). "Interactome networks and human disease". Cell. 144 (6): 986–98. doi:10.1016/j.cell.2011.02.016. PMC 3102045. PMID 21414488.
Amaral LA (May 2008). "A truer measure of our ignorance". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6795–6. Bibcode:2008PNAS..105.6795A. doi:10.1073/pnas.0802459105. PMC 2383987. PMID 18474865.
Bork P, Jensen LJ, von Mering C, Ramani AK, Lee I, Marcotte EM (June 2004). "Protein interaction networks from yeast to human". Current Opinion in Structural Biology. 14 (3): 292–9. doi:10.1016/j.sbi.2004.05.003. PMID 15193308.
Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, Chang C, Hirschman J, Theesfeld C, Rust J, Livstone MS, Dolinski K, Tyers M (January 2015). "The BioGRID interaction database: 2015 update". Nucleic Acids Research. 43 (Database issue): D470–8. doi:10.1093/nar/gku1204. PMC 4383984. PMID 25428363.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A (March 2006). "ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context". BMC Bioinformatics. 7 (Suppl 1): S7. arXiv:q-bio/0410037. doi:10.1186/1471-2105-7-S1-S7. PMC 1810318. PMID 16723010.
Jaeger S, Gaudan S, Leser U, Rebholz-Schuhmann D (July 2008). "Integrating protein-protein interactions and text mining for protein function prediction". BMC Bioinformatics. 9 (Suppl 8): S2. doi:10.1186/1471-2105-9-S8-S2. PMC 2500093. PMID 18673526.
Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Reimand J, Bader GD (2013). "Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers". Molecular Systems Biology. 9: 637. doi:10.1038/msb.2012.68. PMC 3564258. PMID 23340843.
Rolland T, Taşan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, et al. (November 2014). "A proteome-scale map of the human interactome network". Cell. 159 (5): 1212–1226. doi:10.1016/j.cell.2014.10.050. PMC 4266588. PMID 25416956.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, et al. (October 2008). "High-quality binary protein interaction map of the yeast interactome network". Science. 322 (5898): 104–10. Bibcode:2008Sci...322..104Y. doi:10.1126/science.1158684. PMC 2746753. PMID 18719252.
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, et al. (December 2003). "A protein interaction map of Drosophila melanogaster". Science. 302 (5651): 1727–36. Bibcode:2003Sci...302.1727G. doi:10.1126/science.1090289. PMID 14605208. S2CID 1642026.
Xenarios I, Salwínski L, Duan XJ, Higney P, Kim SM, Eisenberg D (January 2002). "DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions". Nucleic Acids Research. 30 (1): 303–5. doi:10.1093/nar/30.1.303. PMC 99070. PMID 11752321.
Lim J, Hao T, Shaw C, Patel AJ, Szabó G, Rual JF, Fisk CJ, Li N, Smolyar A, Hill DE, Barabási AL, Vidal M, Zoghbi HY (May 2006). "A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration". Cell. 125 (4): 801–14. doi:10.1016/j.cell.2006.03.032. PMID 16713569.
Chang J, Gilman SR, Chiang AH, Sanders SJ, Vitkup D (February 2015). "Genotype to phenotype relationships in autism spectrum disorders". Nature Neuroscience. 18 (2): 191–8. doi:10.1038/nn.3907. PMC 4397214. PMID 25531569.
Cancer Genome Atlas Research Network (September 2012). "Comprehensive genomic characterization of squamous cell lung cancers". Nature. 489 (7417): 519–25. Bibcode:2012Natur.489..519T. doi:10.1038/nature11404. PMC 3466113. PMID 22960745.
Gulati S, Cheng TM, Bates PA (August 2013). "Cancer networks and beyond: interpreting mutations using the human interactome and protein structure". Seminars in Cancer Biology. 23 (4): 219–26. doi:10.1016/j.semcancer.2013.05.002. PMID 23680723.
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL (February 2009). "Dynamic modularity in protein interaction networks predicts breast cancer outcome". Nature Biotechnology. 27 (2): 199–204. doi:10.1038/nbt.1522. PMID 19182785. S2CID 11594017.
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (September 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. hdl:11858/00-001M-0000-0010-8592-0. PMID 16169070. S2CID 8235923.
Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME (January 2007). "UniHI: an entry gate to the human protein interactome". Nucleic Acids Research. 35 (Database issue): D590–4. doi:10.1093/nar/gkl817. PMC 1781159. PMID 17158159.
Futschik ME, Chaurasia G, Herzel H (March 2007). "Comparison of human protein-protein interaction maps". Bioinformatics. 23 (5): 605–11. doi:10.1093/bioinformatics/btl683. PMID 17237052.
Tyagi M, Hashimoto K, Shoemaker BA, Wuchty S, Panchenko AR (March 2012). "Large-scale mapping of human protein interactome using structural complexes". EMBO Reports. 13 (3): 266–71. doi:10.1038/embor.2011.261. PMC 3296913. PMID 22261719.
De Las Rivas J, Fontanillo C (June 2010). "Protein-protein interactions essentials: key concepts to building and analyzing interactome networks". PLOS Computational Biology. 6 (6): e1000807. Bibcode:2010PLSCB...6E0807D. doi:10.1371/journal.pcbi.1000807. PMC 2891586. PMID 20589078.

ncbi.nlm.nih.gov

Stumpf MP, Thorne T, de Silva E, Stewart R, An HJ, Lappe M, Wiuf C (May 2008). "Estimating the size of the human interactome". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6959–64. doi:10.1073/pnas.0708078105. PMC 2383957. PMID 18474861.
Hamosh A, Scott AF, Amberger JS, Bocchini CA, McKusick VA (January 2005). "Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders". Nucleic Acids Research. 33 (Database issue): D514–7. doi:10.1093/nar/gki033. PMC 539987. PMID 15608251.
Stenson PD, Mort M, Ball EV, Shaw K, Phillips A, Cooper DN (January 2014). "The Human Gene Mutation Database: building a comprehensive mutation repository for clinical and molecular genetics, diagnostic testing and personalized genomic medicine". Human Genetics. 133 (1): 1–9. doi:10.1007/s00439-013-1358-4. PMC 3898141. PMID 24077912.
Chuang HY, Hofree M, Ideker T (2010). "A decade of systems biology". Annual Review of Cell and Developmental Biology. 26: 721–44. doi:10.1146/annurev-cellbio-100109-104122. PMC 3371392. PMID 20604711.
Vidal M, Cusick ME, Barabási AL (March 2011). "Interactome networks and human disease". Cell. 144 (6): 986–98. doi:10.1016/j.cell.2011.02.016. PMC 3102045. PMID 21414488.
Amaral LA (May 2008). "A truer measure of our ignorance". Proceedings of the National Academy of Sciences of the United States of America. 105 (19): 6795–6. Bibcode:2008PNAS..105.6795A. doi:10.1073/pnas.0802459105. PMC 2383987. PMID 18474865.
Chatr-Aryamontri A, Breitkreutz BJ, Oughtred R, Boucher L, Heinicke S, Chen D, Stark C, Breitkreutz A, Kolas N, O'Donnell L, Reguly T, Nixon J, Ramage L, Winter A, Sellam A, Chang C, Hirschman J, Theesfeld C, Rust J, Livstone MS, Dolinski K, Tyers M (January 2015). "The BioGRID interaction database: 2015 update". Nucleic Acids Research. 43 (Database issue): D470–8. doi:10.1093/nar/gku1204. PMC 4383984. PMID 25428363.
Margolin AA, Nemenman I, Basso K, Wiggins C, Stolovitzky G, Dalla Favera R, Califano A (March 2006). "ARACNE: an algorithm for the reconstruction of gene regulatory networks in a mammalian cellular context". BMC Bioinformatics. 7 (Suppl 1): S7. arXiv:q-bio/0410037. doi:10.1186/1471-2105-7-S1-S7. PMC 1810318. PMID 16723010.
Jaeger S, Gaudan S, Leser U, Rebholz-Schuhmann D (July 2008). "Integrating protein-protein interactions and text mining for protein function prediction". BMC Bioinformatics. 9 (Suppl 8): S2. doi:10.1186/1471-2105-9-S8-S2. PMC 2500093. PMID 18673526.
Reimand J, Bader GD (2013). "Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers". Molecular Systems Biology. 9: 637. doi:10.1038/msb.2012.68. PMC 3564258. PMID 23340843.
Rolland T, Taşan M, Charloteaux B, Pevzner SJ, Zhong Q, Sahni N, et al. (November 2014). "A proteome-scale map of the human interactome network". Cell. 159 (5): 1212–1226. doi:10.1016/j.cell.2014.10.050. PMC 4266588. PMID 25416956.
Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, et al. (October 2008). "High-quality binary protein interaction map of the yeast interactome network". Science. 322 (5898): 104–10. Bibcode:2008Sci...322..104Y. doi:10.1126/science.1158684. PMC 2746753. PMID 18719252.
Xenarios I, Salwínski L, Duan XJ, Higney P, Kim SM, Eisenberg D (January 2002). "DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions". Nucleic Acids Research. 30 (1): 303–5. doi:10.1093/nar/30.1.303. PMC 99070. PMID 11752321.
Chang J, Gilman SR, Chiang AH, Sanders SJ, Vitkup D (February 2015). "Genotype to phenotype relationships in autism spectrum disorders". Nature Neuroscience. 18 (2): 191–8. doi:10.1038/nn.3907. PMC 4397214. PMID 25531569.
Cancer Genome Atlas Research Network (September 2012). "Comprehensive genomic characterization of squamous cell lung cancers". Nature. 489 (7417): 519–25. Bibcode:2012Natur.489..519T. doi:10.1038/nature11404. PMC 3466113. PMID 22960745.
Chaurasia G, Iqbal Y, Hänig C, Herzel H, Wanker EE, Futschik ME (January 2007). "UniHI: an entry gate to the human protein interactome". Nucleic Acids Research. 35 (Database issue): D590–4. doi:10.1093/nar/gkl817. PMC 1781159. PMID 17158159.
Tyagi M, Hashimoto K, Shoemaker BA, Wuchty S, Panchenko AR (March 2012). "Large-scale mapping of human protein interactome using structural complexes". EMBO Reports. 13 (3): 266–71. doi:10.1038/embor.2011.261. PMC 3296913. PMID 22261719.
De Las Rivas J, Fontanillo C (June 2010). "Protein-protein interactions essentials: key concepts to building and analyzing interactome networks". PLOS Computational Biology. 6 (6): e1000807. Bibcode:2010PLSCB...6E0807D. doi:10.1371/journal.pcbi.1000807. PMC 2891586. PMID 20589078.

semanticscholar.org

api.semanticscholar.org

Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Konstantinos T, Dimitrakopoulos C, Kleftogiannis D, Charalampos M, Stergios P, Likothanassis S, Seferina M (2014). "HINT-KB: The Human Interactome Knowledge Base". Artificial Intelligence Review. 42 (3): 427–443. doi:10.1007/s10462-013-9409-8. S2CID 16376962.
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, et al. (October 2005). "Towards a proteome-scale map of the human protein-protein interaction network". Nature. 437 (7062): 1173–8. Bibcode:2005Natur.437.1173R. doi:10.1038/nature04209. PMID 16189514. S2CID 4427026.
Bonetta L (December 2010). "Protein-protein interactions: Interactome under construction". Nature. 468 (7325): 851–4. Bibcode:2010Natur.468..851B. doi:10.1038/468851a. PMID 21150998. S2CID 205060874.
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, et al. (December 2003). "A protein interaction map of Drosophila melanogaster". Science. 302 (5651): 1727–36. Bibcode:2003Sci...302.1727G. doi:10.1126/science.1090289. PMID 14605208. S2CID 1642026.
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, Faria D, Bull S, Pawson T, Morris Q, Wrana JL (February 2009). "Dynamic modularity in protein interaction networks predicts breast cancer outcome". Nature Biotechnology. 27 (2): 199–204. doi:10.1038/nbt.1522. PMID 19182785. S2CID 11594017.
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksöz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (September 2005). "A human protein-protein interaction network: a resource for annotating the proteome". Cell. 122 (6): 957–68. doi:10.1016/j.cell.2005.08.029. hdl:11858/00-001M-0000-0010-8592-0. PMID 16169070. S2CID 8235923.