IPlant Collaborative (English Wikipedia)

Dooley, Rion (July 19, 2011). "An API To Feed the World". TeraGrid 2011: Extreme Digital Discovery. Salt Lake City, Utah. Archived from the original (PDF) on September 19, 2012. Retrieved September 28, 2011.

arizona.edu

bio5.arizona.edu

"UA-Led Research Team Awarded $50 Million to Solve Plant Biology's Grand Challenges". News release. University of Arizona. January 30, 2008. Archived from the original on April 2, 2012. Retrieved September 23, 2011.

aspb.org

abstracts.aspb.org

Narro, Martha L.; et al. (August 2011). "The TNRS: a taxonomic name resolution service for plants". Plant Biology. Minneapolis. Archived from the original on May 16, 2011. Retrieved September 14, 2011.

books.google.com

Pautasso, Cesare; Wilde, Erik; Alarcon, Rosa (December 4, 2013). REST: Advanced Research Topics and Practical Applications. Springer Science & Business Media. pp. 76–77. ISBN 9781461492993. Retrieved June 27, 2016.
Barros, Alistair; Oberle, Daniel (March 2, 2012). Handbook of Service Description: USDL and Its Methods. Springer Science & Business Media. p. 169. ISBN 9781461418641. Retrieved June 27, 2016.

botanyconference.org

2011.botanyconference.org

Uwe Hilgert (July 9, 2011). "DNA Subway Places Students On Fast Track To Plant Genome Analysis and DNA BarCoding". Botany 2011: Healing the Planet (workshop). Retrieved September 29, 2011.

casc.org

Peter Arzberger (March 24, 2010). "Biological Sciences and Cyberinfrastructure for the 21st Century" (PDF). Coalition for Academic Scientific Computation presentation. Archived from the original (PDF) on September 23, 2015. Retrieved September 29, 2011.

cshl.edu

repository.cshl.edu

Jordan, Chris; Stanzione, Dan; Ware, Doreen; Lu, Jerry; Noutsos, Christos (2010). "Comprehensive data infrastructure for plant bioinformatics" (PDF). 2010 IEEE International Conference on Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS). pp. 1–5. doi:10.1109/CLUSTERWKSP.2010.5613093. ISBN 978-1-4244-8395-2. S2CID 2278398.

dnalc.org

"DNA Subway: Fast Track to Gene Annotation and Genome Analysis". Dolan DNA Learning Center website. Retrieved September 29, 2011.

doi.org

Stein, Lincoln (September 2008). "Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges". Nature Reviews Genetics. 9 (9): 678–688. doi:10.1038/nrg2414. PMID 18714290. S2CID 339653.
Dilworth, Machi F (2009). "Perspective: Plant biology—A quiet pioneer". Plant Biotechnology. 26 (2): 183–187. doi:10.5511/plantbiotechnology.26.183.
Goff, Stephen A.; et al. (2011). "The iPlant Collaborative: Cyberinfrastructure for Plant Biology". Frontiers in Plant Science. 2: 34. doi:10.3389/fpls.2011.00034. ISSN 1664-462X. PMC 3355756. PMID 22645531.
Heidi Ledford (June 24, 2009). "Cyberinfrastructure: Feed me data". Nature. 459 (7250): 1047–1049. doi:10.1038/4591047a. PMID 19553968. The iPlant programme was designed to give plant scientists a new information infrastructure. But first they had to decide what they wanted...
Jordan, Chris; Stanzione, Dan; Ware, Doreen; Lu, Jerry; Noutsos, Christos (2010). "Comprehensive data infrastructure for plant bioinformatics" (PDF). 2010 IEEE International Conference on Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS). pp. 1–5. doi:10.1109/CLUSTERWKSP.2010.5613093. ISBN 978-1-4244-8395-2. S2CID 2278398.
Ram, Sudha; Jun Liu (2010). "Provenance Management in BioSciences". Advances in Conceptual Modeling – Applications and Challenges. Advances in Conceptual Modeling‚ Applications and Challenges. Vol. 6413. Springer Berlin / Heidelberg. pp. 54–64. doi:10.1007/978-3-642-16385-2_8. ISBN 978-3-642-16384-5.
Brown, Susan A.; Thatcher, Sherry; Dang, Yan (2010). "Managing Knowledge in a Changing Scientific Landscape: The Impact of Cyberinfrastructure". 2010 43rd Hawaii International Conference on System Sciences. pp. 1–10. doi:10.1109/HICSS.2010.263. ISBN 978-1-4244-5509-6. S2CID 1132763.
Gessler, D. D.; et al. (September 23, 2009). "SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services". BMC Bioinformatics. 10 (309): 309. doi:10.1186/1471-2105-10-309. PMC 2761904. PMID 19775460.
Nelson, R. T.; et al. (June 4, 2010). "Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration". BioData Mining. 3 (1): 3. doi:10.1186/1756-0381-3-3. PMC 2894815. PMID 20525377.
John Whitfield (June 13, 2011). "Species spellchecker fixes plant glitches: Online tool should weed out misspellings and duplications". Nature. 474 (7351): 263. doi:10.1038/474263a. PMID 21677719.
Hanlon, Matthew R.; Mock, Stephen; Nuthulapati, Praveen; Gonzales, Michael B.; Soltis, Pamela; Soltis, Douglas; Majure, Lucas C.; Payton, Adam; Mishler, Brent; Tremblay, Susan; Madsen, Thomas; Olmstead, Richard; McCourt, Richard; Wojciechowski, Martin; Merchant, Nirav (2010). "My-Plant.org: A phylogenetically structured social network". 2010 Gateway Computing Environments Workshop (GCE). pp. 1–8. doi:10.1109/GCE.2010.5676118. ISBN 978-1-4244-9751-5. S2CID 12621375.
Schaeffer, Mary; et al. (2011). "MaizeGDB: curation and outreach go hand-in-hand". Database: The Journal of Biological Databases and Curation. 2011. Oxford University Press: bar022. doi:10.1093/database/bar022. PMC 3104940. PMID 21624896.

elixir-europe.org

"ELIXIR: Data for Life". Official web site. Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, United Kingdom: EMBL-European Bioinformatics Institute. Retrieved September 28, 2011.

emeconline.com

"Current Projects". EMEC website. Archived from the original on January 8, 2016. Retrieved February 21, 2013.

esciencenews.com

Thomas Veneklasen (March 11, 2010). "Who does what on Wikipedia?". e! Science News. Retrieved September 29, 2011.

gatech.edu

smartech.gatech.edu

Moore, Reagan W.; et al. (May 19, 2009). "Policy-Based Distributed Data Management Systems". 4th International Conference on Open Repositories. Georgia Institute of Technology. Retrieved September 28, 2011.

indiana.edu

salsahpc.indiana.edu

Seung-jin, Kim; et al. (November 1, 2010). "Facilitating access to customized computational infrastructure for plant sciences: Atmosphere cloudfront" (PDF). 2nd IEEE International Conference on Cloud Computing Technology and Science. Indianapolis, Indiana. Archived from the original (PDF) on April 2, 2012. Retrieved September 28, 2011.

iplantcollaborative.org

"Stephen Goff, Ph.D." Staff biography page from iPlant web site. Archived from the original on November 28, 2011. Retrieved September 21, 2011.
"Leadership". Leadership page from iPlant website. Archived from the original on May 28, 2014. Retrieved May 27, 2014.
"iPlant Moving Forward on Grand Challenge Collaborations". iPlant Leaflet. Vol. 09–2. April 9, 2009. Archived from the original on April 2, 2012. Retrieved September 25, 2011.
"Trait Evolution". iPlant web site. Archived from the original on November 28, 2011. Retrieved September 25, 2011.
"Integration and Visualization Workshop". iPlant Leaflet. Vol. 11–2. June 8, 2011. Archived from the original on April 2, 2012. Retrieved September 25, 2011.

news.iplantcollaborative.org

Renewal announcement on iPlant news website http://news.iplantcollaborative.org/?p=212. Retrieved May 27, 2014. {{cite web}}: Missing or empty |title= (help)

pods.iplantcollaborative.org

Matthew Helmke (August 19, 2011). "The iPlant Discovery Environment". Discovery Environment manual 0.4. Retrieved September 28, 2011.^{[permanent dead link‍]}

newphytologist.org

Steve Goff (September 18, 2008). "The iPlant Collaborative: A Cyberinfrastructure-Centered Community of Plant and Computing Scientists" (PDF). New PhytologistSymposium presentation. Archived from the original (PDF) on April 22, 2012. Retrieved September 29, 2011.

nih.gov

pubmed.ncbi.nlm.nih.gov

Stein, Lincoln (September 2008). "Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges". Nature Reviews Genetics. 9 (9): 678–688. doi:10.1038/nrg2414. PMID 18714290. S2CID 339653.
Goff, Stephen A.; et al. (2011). "The iPlant Collaborative: Cyberinfrastructure for Plant Biology". Frontiers in Plant Science. 2: 34. doi:10.3389/fpls.2011.00034. ISSN 1664-462X. PMC 3355756. PMID 22645531.
Heidi Ledford (June 24, 2009). "Cyberinfrastructure: Feed me data". Nature. 459 (7250): 1047–1049. doi:10.1038/4591047a. PMID 19553968. The iPlant programme was designed to give plant scientists a new information infrastructure. But first they had to decide what they wanted...
Gessler, D. D.; et al. (September 23, 2009). "SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services". BMC Bioinformatics. 10 (309): 309. doi:10.1186/1471-2105-10-309. PMC 2761904. PMID 19775460.
Nelson, R. T.; et al. (June 4, 2010). "Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration". BioData Mining. 3 (1): 3. doi:10.1186/1756-0381-3-3. PMC 2894815. PMID 20525377.
John Whitfield (June 13, 2011). "Species spellchecker fixes plant glitches: Online tool should weed out misspellings and duplications". Nature. 474 (7351): 263. doi:10.1038/474263a. PMID 21677719.
Schaeffer, Mary; et al. (2011). "MaizeGDB: curation and outreach go hand-in-hand". Database: The Journal of Biological Databases and Curation. 2011. Oxford University Press: bar022. doi:10.1093/database/bar022. PMC 3104940. PMID 21624896.

ncbi.nlm.nih.gov

Goff, Stephen A.; et al. (2011). "The iPlant Collaborative: Cyberinfrastructure for Plant Biology". Frontiers in Plant Science. 2: 34. doi:10.3389/fpls.2011.00034. ISSN 1664-462X. PMC 3355756. PMID 22645531.
Gessler, D. D.; et al. (September 23, 2009). "SSWAP: A Simple Semantic Web Architecture and Protocol for semantic web services". BMC Bioinformatics. 10 (309): 309. doi:10.1186/1471-2105-10-309. PMC 2761904. PMID 19775460.
Nelson, R. T.; et al. (June 4, 2010). "Applications and methods utilizing the Simple Semantic Web Architecture and Protocol (SSWAP) for bioinformatics resource discovery and disparate data and service integration". BioData Mining. 3 (1): 3. doi:10.1186/1756-0381-3-3. PMC 2894815. PMID 20525377.
Schaeffer, Mary; et al. (2011). "MaizeGDB: curation and outreach go hand-in-hand". Database: The Journal of Biological Databases and Curation. 2011. Oxford University Press: bar022. doi:10.1093/database/bar022. PMC 3104940. PMID 21624896.

nsf.gov

"PSCIC Full Proposal: The iPlant Collaborative: A Cyberinfrastructure-Centered Community for a New Plant Biology". Award Abstract #0735191. National Science Foundation. August 22, 2011. Retrieved September 21, 2011.
Revolutionizing Science and Engineering Through Cyberinfrastructure: Report of the National Science Foundation Blue-Ribbon Advisory Panel on Cyberinfrastructure. National Science Foundation. January 15, 2003. Archived from the original on September 19, 2011. Retrieved September 18, 2011.
"Plant Science Cyberinfrastructure Collaborative (PSCIC)". Program Solicitation 06-594. National Science Foundation. November 30, 2006. Retrieved September 21, 2011.
"National Science Foundation Awards $50 Million for Collaborative Plant Biology Project to Tackle Greater Science Questions". News release. National Science Foundation. January 30, 2008. Retrieved September 21, 2011.
"Award Search—Awardee Information". NSF website search. National Science Foundation. Retrieved September 28, 2011. See abstracts for awards #0849861, #0923975, #0940841, #0953184, #1027542, #1031416, #1032105, #1126481, #1126998.

semanticscholar.org

api.semanticscholar.org

Stein, Lincoln (September 2008). "Towards a cyberinfrastructure for the biological sciences: progress, visions and challenges". Nature Reviews Genetics. 9 (9): 678–688. doi:10.1038/nrg2414. PMID 18714290. S2CID 339653.
Jordan, Chris; Stanzione, Dan; Ware, Doreen; Lu, Jerry; Noutsos, Christos (2010). "Comprehensive data infrastructure for plant bioinformatics" (PDF). 2010 IEEE International Conference on Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS). pp. 1–5. doi:10.1109/CLUSTERWKSP.2010.5613093. ISBN 978-1-4244-8395-2. S2CID 2278398.
Brown, Susan A.; Thatcher, Sherry; Dang, Yan (2010). "Managing Knowledge in a Changing Scientific Landscape: The Impact of Cyberinfrastructure". 2010 43rd Hawaii International Conference on System Sciences. pp. 1–10. doi:10.1109/HICSS.2010.263. ISBN 978-1-4244-5509-6. S2CID 1132763.
Hanlon, Matthew R.; Mock, Stephen; Nuthulapati, Praveen; Gonzales, Michael B.; Soltis, Pamela; Soltis, Douglas; Majure, Lucas C.; Payton, Adam; Mishler, Brent; Tremblay, Susan; Madsen, Thomas; Olmstead, Richard; McCourt, Richard; Wojciechowski, Martin; Merchant, Nirav (2010). "My-Plant.org: A phylogenetically structured social network". 2010 Gateway Computing Environments Workshop (GCE). pp. 1–8. doi:10.1109/GCE.2010.5676118. ISBN 978-1-4244-9751-5. S2CID 12621375.

ssrn.com

papers.ssrn.com

Jun Liu; Sudha Ram (December 2009). "Who Does What: Collaboration Patterns in the Wikipedia and Their Impact on Data Quality". 19th Workshop on Information Technologies and Systems: 175–180. SSRN 1565682.

teragrid.org

Dooley, Rion (July 19, 2011). "An API To Feed the World". TeraGrid 2011: Extreme Digital Discovery. Salt Lake City, Utah. Archived from the original (PDF) on September 19, 2012. Retrieved September 28, 2011.

utexas.edu

tacc.utexas.edu

"Dan Stanzione, Ph.D." Staff biography page from Texas Advanced Computing Center web site. Retrieved September 21, 2011.

utexas.edu

"Computing for Life: Scientists depend on advanced computing to better understand evolution, drug discovery and genetics". University of Texas at Austin. May 31, 2010. Archived from the original on October 2, 2011. Retrieved September 25, 2011.

web.archive.org

Revolutionizing Science and Engineering Through Cyberinfrastructure: Report of the National Science Foundation Blue-Ribbon Advisory Panel on Cyberinfrastructure. National Science Foundation. January 15, 2003. Archived from the original on September 19, 2011. Retrieved September 18, 2011.
Peter Arzberger (March 24, 2010). "Biological Sciences and Cyberinfrastructure for the 21st Century" (PDF). Coalition for Academic Scientific Computation presentation. Archived from the original (PDF) on September 23, 2015. Retrieved September 29, 2011.
"Stephen Goff, Ph.D." Staff biography page from iPlant web site. Archived from the original on November 28, 2011. Retrieved September 21, 2011.
"Leadership". Leadership page from iPlant website. Archived from the original on May 28, 2014. Retrieved May 27, 2014.
"About Bamboo". Project Bamboo website. Archived from the original on October 9, 2011. Retrieved September 27, 2011.
Steve Goff (September 18, 2008). "The iPlant Collaborative: A Cyberinfrastructure-Centered Community of Plant and Computing Scientists" (PDF). New PhytologistSymposium presentation. Archived from the original (PDF) on April 22, 2012. Retrieved September 29, 2011.
"UA-Led Research Team Awarded $50 Million to Solve Plant Biology's Grand Challenges". News release. University of Arizona. January 30, 2008. Archived from the original on April 2, 2012. Retrieved September 23, 2011.
"iPlant Moving Forward on Grand Challenge Collaborations". iPlant Leaflet. Vol. 09–2. April 9, 2009. Archived from the original on April 2, 2012. Retrieved September 25, 2011.
"Trait Evolution". iPlant web site. Archived from the original on November 28, 2011. Retrieved September 25, 2011.
"Integration and Visualization Workshop". iPlant Leaflet. Vol. 11–2. June 8, 2011. Archived from the original on April 2, 2012. Retrieved September 25, 2011.
"Computing for Life: Scientists depend on advanced computing to better understand evolution, drug discovery and genetics". University of Texas at Austin. May 31, 2010. Archived from the original on October 2, 2011. Retrieved September 25, 2011.
"Current Projects". EMEC website. Archived from the original on January 8, 2016. Retrieved February 21, 2013.
Seung-jin, Kim; et al. (November 1, 2010). "Facilitating access to customized computational infrastructure for plant sciences: Atmosphere cloudfront" (PDF). 2nd IEEE International Conference on Cloud Computing Technology and Science. Indianapolis, Indiana. Archived from the original (PDF) on April 2, 2012. Retrieved September 28, 2011.
Narro, Martha L.; et al. (August 2011). "The TNRS: a taxonomic name resolution service for plants". Plant Biology. Minneapolis. Archived from the original on May 16, 2011. Retrieved September 14, 2011.

wisc.edu

cs.wisc.edu

Juan Antonio Raygoza Garay; Sonya Lowry; John Wregglesworth (May 3, 2011). "Enabling Plant Sciences Research with the iPlant Discovery Environment and Condor" (PDF). Condor Week presentation. University of Wisconsin Computer Science Department. Retrieved September 28, 2011.

worldcat.org

search.worldcat.org

Goff, Stephen A.; et al. (2011). "The iPlant Collaborative: Cyberinfrastructure for Plant Biology". Frontiers in Plant Science. 2: 34. doi:10.3389/fpls.2011.00034. ISSN 1664-462X. PMC 3355756. PMID 22645531.