Models of DNA evolution (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Models of DNA evolution" in English language version.

refsWebsite

Global rank English rank

19nih.gov

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16doi.org

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8harvard.edu

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8semanticscholar.org

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3arxiv.org

69^th place

59^th place

1worldcat.org

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1books.google.com

3^rd place

1psu.edu

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1handle.net

102^nd place

76^th place

1cam.ac.uk

670^th place

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arxiv.org

Bashford JD, Jarvis PD, Sumner JG, Steel MA (2004-02-25). "U (1) × U (1) × U (1) symmetry of the Kimura 3ST model and phylogenetic branching processes". Journal of Physics A: Mathematical and General. 37 (8): L81–L89. arXiv:q-bio/0310037. doi:10.1088/0305-4470/37/8/L01. S2CID 7845860.
Sumner JG, Charleston MA, Jermiin LS, Jarvis PD (August 2008). "Markov invariants, plethysms, and phylogenetics". Journal of Theoretical Biology. 253 (3): 601–15. arXiv:0711.3503. Bibcode:2008JThBi.253..601S. doi:10.1016/j.jtbi.2008.04.001. PMID 18513747. S2CID 6851591.
Hendy MD, Snir S (July 2008). "Hadamard conjugation for the Kimura 3ST model: combinatorial proof using path sets". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 461–71. arXiv:q-bio/0505055. doi:10.1109/TCBB.2007.70227. PMID 18670048. S2CID 20633916.

books.google.com

Hendy MD (2005). "Hadamard conjugation: an analytic tool for phylogenetics". In Gascuel O (ed.). Mathematics of Evolution and Phylogeny. Oxford University Press. pp. 143–177. ISBN 978-0198566106.

cam.ac.uk

damtp.cam.ac.uk

Tavaré S (1986). "Some Probabilistic and Statistical Problems in the Analysis of DNA Sequences" (PDF). Lectures on Mathematics in the Life Sciences. 17: 57–86.

doi.org

Arenas, Miguel (2015). "Trends in substitution models of molecular evolution". Frontiers in Genetics. 6: 319. doi:10.3389/fgene.2015.00319. ISSN 1664-8021. PMC 4620419. PMID 26579193.
Kimura M (December 1980). "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences". Journal of Molecular Evolution. 16 (2): 111–20. Bibcode:1980JMolE..16..111K. doi:10.1007/BF01731581. PMID 7463489. S2CID 19528200.
Kimura M (January 1981). "Estimation of evolutionary distances between homologous nucleotide sequences". Proceedings of the National Academy of Sciences of the United States of America. 78 (1): 454–8. Bibcode:1981PNAS...78..454K. doi:10.1073/pnas.78.1.454. PMC 319072. PMID 6165991.
Bashford JD, Jarvis PD, Sumner JG, Steel MA (2004-02-25). "U (1) × U (1) × U (1) symmetry of the Kimura 3ST model and phylogenetic branching processes". Journal of Physics A: Mathematical and General. 37 (8): L81–L89. arXiv:q-bio/0310037. doi:10.1088/0305-4470/37/8/L01. S2CID 7845860.
Sumner JG, Charleston MA, Jermiin LS, Jarvis PD (August 2008). "Markov invariants, plethysms, and phylogenetics". Journal of Theoretical Biology. 253 (3): 601–15. arXiv:0711.3503. Bibcode:2008JThBi.253..601S. doi:10.1016/j.jtbi.2008.04.001. PMID 18513747. S2CID 6851591.
Sumner JG, Jarvis PD, Holland BR (December 2014). "A tensorial approach to the inversion of group-based phylogenetic models". BMC Evolutionary Biology. 14 (1): 236. doi:10.1186/s12862-014-0236-6. PMC 4268818. PMID 25472897.
Hendy MD, Penny D, Steel MA (April 1994). "A discrete Fourier analysis for evolutionary trees". Proceedings of the National Academy of Sciences of the United States of America. 91 (8): 3339–43. Bibcode:1994PNAS...91.3339H. doi:10.1073/pnas.91.8.3339. PMC 43572. PMID 8159749.
Hendy MD, Snir S (July 2008). "Hadamard conjugation for the Kimura 3ST model: combinatorial proof using path sets". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 461–71. arXiv:q-bio/0505055. doi:10.1109/TCBB.2007.70227. PMID 18670048. S2CID 20633916.
Waddell PJ, Penny D, Moore T (August 1997). "Hadamard conjugations and modeling sequence evolution with unequal rates across sites". Molecular Phylogenetics and Evolution. 8 (1): 33–50. doi:10.1006/mpev.1997.0405. PMID 9242594.
Yang Z (September 1994). "Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods". Journal of Molecular Evolution. 39 (3): 306–14. Bibcode:1994JMolE..39..306Y. CiteSeerX 10.1.1.305.951. doi:10.1007/BF00160154. PMID 7932792. S2CID 17911050.
Felsenstein J (1981). "Evolutionary trees from DNA sequences: a maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Hasegawa M, Kishino H, Yano T (1985). "Dating of the human-ape splitting by a molecular clock of mitochondrial DNA". Journal of Molecular Evolution. 22 (2): 160–74. Bibcode:1985JMolE..22..160H. doi:10.1007/BF02101694. PMID 3934395. S2CID 25554168.
Kishino H, Hasegawa M (August 1989). "Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea". Journal of Molecular Evolution. 29 (2): 170–9. Bibcode:1989JMolE..29..170K. doi:10.1007/BF02100115. PMID 2509717. S2CID 8045061.
Felsenstein J, Churchill GA (January 1996). "A Hidden Markov Model approach to variation among sites in rate of evolution". Molecular Biology and Evolution. 13 (1): 93–104. doi:10.1093/oxfordjournals.molbev.a025575. hdl:1813/31897. PMID 8583911.
Tamura K (July 1992). "Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases". Molecular Biology and Evolution. 9 (4): 678–87. doi:10.1093/oxfordjournals.molbev.a040752. PMID 1630306.
Tamura K, Nei M (May 1993). "Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees". Molecular Biology and Evolution. 10 (3): 512–26. doi:10.1093/oxfordjournals.molbev.a040023. PMID 8336541.

handle.net

hdl.handle.net

Felsenstein J, Churchill GA (January 1996). "A Hidden Markov Model approach to variation among sites in rate of evolution". Molecular Biology and Evolution. 13 (1): 93–104. doi:10.1093/oxfordjournals.molbev.a025575. hdl:1813/31897. PMID 8583911.

harvard.edu

ui.adsabs.harvard.edu

Kimura M (December 1980). "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences". Journal of Molecular Evolution. 16 (2): 111–20. Bibcode:1980JMolE..16..111K. doi:10.1007/BF01731581. PMID 7463489. S2CID 19528200.
Kimura M (January 1981). "Estimation of evolutionary distances between homologous nucleotide sequences". Proceedings of the National Academy of Sciences of the United States of America. 78 (1): 454–8. Bibcode:1981PNAS...78..454K. doi:10.1073/pnas.78.1.454. PMC 319072. PMID 6165991.
Sumner JG, Charleston MA, Jermiin LS, Jarvis PD (August 2008). "Markov invariants, plethysms, and phylogenetics". Journal of Theoretical Biology. 253 (3): 601–15. arXiv:0711.3503. Bibcode:2008JThBi.253..601S. doi:10.1016/j.jtbi.2008.04.001. PMID 18513747. S2CID 6851591.
Hendy MD, Penny D, Steel MA (April 1994). "A discrete Fourier analysis for evolutionary trees". Proceedings of the National Academy of Sciences of the United States of America. 91 (8): 3339–43. Bibcode:1994PNAS...91.3339H. doi:10.1073/pnas.91.8.3339. PMC 43572. PMID 8159749.
Yang Z (September 1994). "Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods". Journal of Molecular Evolution. 39 (3): 306–14. Bibcode:1994JMolE..39..306Y. CiteSeerX 10.1.1.305.951. doi:10.1007/BF00160154. PMID 7932792. S2CID 17911050.
Felsenstein J (1981). "Evolutionary trees from DNA sequences: a maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Hasegawa M, Kishino H, Yano T (1985). "Dating of the human-ape splitting by a molecular clock of mitochondrial DNA". Journal of Molecular Evolution. 22 (2): 160–74. Bibcode:1985JMolE..22..160H. doi:10.1007/BF02101694. PMID 3934395. S2CID 25554168.
Kishino H, Hasegawa M (August 1989). "Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea". Journal of Molecular Evolution. 29 (2): 170–9. Bibcode:1989JMolE..29..170K. doi:10.1007/BF02100115. PMID 2509717. S2CID 8045061.

nih.gov

pubmed.ncbi.nlm.nih.gov

Arenas, Miguel (2015). "Trends in substitution models of molecular evolution". Frontiers in Genetics. 6: 319. doi:10.3389/fgene.2015.00319. ISSN 1664-8021. PMC 4620419. PMID 26579193.
Kimura M (December 1980). "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences". Journal of Molecular Evolution. 16 (2): 111–20. Bibcode:1980JMolE..16..111K. doi:10.1007/BF01731581. PMID 7463489. S2CID 19528200.
Kimura M (January 1981). "Estimation of evolutionary distances between homologous nucleotide sequences". Proceedings of the National Academy of Sciences of the United States of America. 78 (1): 454–8. Bibcode:1981PNAS...78..454K. doi:10.1073/pnas.78.1.454. PMC 319072. PMID 6165991.
Sumner JG, Charleston MA, Jermiin LS, Jarvis PD (August 2008). "Markov invariants, plethysms, and phylogenetics". Journal of Theoretical Biology. 253 (3): 601–15. arXiv:0711.3503. Bibcode:2008JThBi.253..601S. doi:10.1016/j.jtbi.2008.04.001. PMID 18513747. S2CID 6851591.
Sumner JG, Jarvis PD, Holland BR (December 2014). "A tensorial approach to the inversion of group-based phylogenetic models". BMC Evolutionary Biology. 14 (1): 236. doi:10.1186/s12862-014-0236-6. PMC 4268818. PMID 25472897.
Hendy MD, Penny D, Steel MA (April 1994). "A discrete Fourier analysis for evolutionary trees". Proceedings of the National Academy of Sciences of the United States of America. 91 (8): 3339–43. Bibcode:1994PNAS...91.3339H. doi:10.1073/pnas.91.8.3339. PMC 43572. PMID 8159749.
Hendy MD, Snir S (July 2008). "Hadamard conjugation for the Kimura 3ST model: combinatorial proof using path sets". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 461–71. arXiv:q-bio/0505055. doi:10.1109/TCBB.2007.70227. PMID 18670048. S2CID 20633916.
Waddell PJ, Penny D, Moore T (August 1997). "Hadamard conjugations and modeling sequence evolution with unequal rates across sites". Molecular Phylogenetics and Evolution. 8 (1): 33–50. doi:10.1006/mpev.1997.0405. PMID 9242594.
Yang Z (September 1994). "Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods". Journal of Molecular Evolution. 39 (3): 306–14. Bibcode:1994JMolE..39..306Y. CiteSeerX 10.1.1.305.951. doi:10.1007/BF00160154. PMID 7932792. S2CID 17911050.
Felsenstein J (1981). "Evolutionary trees from DNA sequences: a maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Hasegawa M, Kishino H, Yano T (1985). "Dating of the human-ape splitting by a molecular clock of mitochondrial DNA". Journal of Molecular Evolution. 22 (2): 160–74. Bibcode:1985JMolE..22..160H. doi:10.1007/BF02101694. PMID 3934395. S2CID 25554168.
Kishino H, Hasegawa M (August 1989). "Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea". Journal of Molecular Evolution. 29 (2): 170–9. Bibcode:1989JMolE..29..170K. doi:10.1007/BF02100115. PMID 2509717. S2CID 8045061.
Felsenstein J, Churchill GA (January 1996). "A Hidden Markov Model approach to variation among sites in rate of evolution". Molecular Biology and Evolution. 13 (1): 93–104. doi:10.1093/oxfordjournals.molbev.a025575. hdl:1813/31897. PMID 8583911.
Tamura K (July 1992). "Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases". Molecular Biology and Evolution. 9 (4): 678–87. doi:10.1093/oxfordjournals.molbev.a040752. PMID 1630306.
Tamura K, Nei M (May 1993). "Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees". Molecular Biology and Evolution. 10 (3): 512–26. doi:10.1093/oxfordjournals.molbev.a040023. PMID 8336541.

ncbi.nlm.nih.gov

Arenas, Miguel (2015). "Trends in substitution models of molecular evolution". Frontiers in Genetics. 6: 319. doi:10.3389/fgene.2015.00319. ISSN 1664-8021. PMC 4620419. PMID 26579193.
Kimura M (January 1981). "Estimation of evolutionary distances between homologous nucleotide sequences". Proceedings of the National Academy of Sciences of the United States of America. 78 (1): 454–8. Bibcode:1981PNAS...78..454K. doi:10.1073/pnas.78.1.454. PMC 319072. PMID 6165991.
Sumner JG, Jarvis PD, Holland BR (December 2014). "A tensorial approach to the inversion of group-based phylogenetic models". BMC Evolutionary Biology. 14 (1): 236. doi:10.1186/s12862-014-0236-6. PMC 4268818. PMID 25472897.
Hendy MD, Penny D, Steel MA (April 1994). "A discrete Fourier analysis for evolutionary trees". Proceedings of the National Academy of Sciences of the United States of America. 91 (8): 3339–43. Bibcode:1994PNAS...91.3339H. doi:10.1073/pnas.91.8.3339. PMC 43572. PMID 8159749.

psu.edu

citeseerx.ist.psu.edu

Yang Z (September 1994). "Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods". Journal of Molecular Evolution. 39 (3): 306–14. Bibcode:1994JMolE..39..306Y. CiteSeerX 10.1.1.305.951. doi:10.1007/BF00160154. PMID 7932792. S2CID 17911050.

semanticscholar.org

api.semanticscholar.org

Kimura M (December 1980). "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences". Journal of Molecular Evolution. 16 (2): 111–20. Bibcode:1980JMolE..16..111K. doi:10.1007/BF01731581. PMID 7463489. S2CID 19528200.
Bashford JD, Jarvis PD, Sumner JG, Steel MA (2004-02-25). "U (1) × U (1) × U (1) symmetry of the Kimura 3ST model and phylogenetic branching processes". Journal of Physics A: Mathematical and General. 37 (8): L81–L89. arXiv:q-bio/0310037. doi:10.1088/0305-4470/37/8/L01. S2CID 7845860.
Sumner JG, Charleston MA, Jermiin LS, Jarvis PD (August 2008). "Markov invariants, plethysms, and phylogenetics". Journal of Theoretical Biology. 253 (3): 601–15. arXiv:0711.3503. Bibcode:2008JThBi.253..601S. doi:10.1016/j.jtbi.2008.04.001. PMID 18513747. S2CID 6851591.
Hendy MD, Snir S (July 2008). "Hadamard conjugation for the Kimura 3ST model: combinatorial proof using path sets". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 5 (3): 461–71. arXiv:q-bio/0505055. doi:10.1109/TCBB.2007.70227. PMID 18670048. S2CID 20633916.
Yang Z (September 1994). "Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods". Journal of Molecular Evolution. 39 (3): 306–14. Bibcode:1994JMolE..39..306Y. CiteSeerX 10.1.1.305.951. doi:10.1007/BF00160154. PMID 7932792. S2CID 17911050.
Felsenstein J (1981). "Evolutionary trees from DNA sequences: a maximum likelihood approach". Journal of Molecular Evolution. 17 (6): 368–76. Bibcode:1981JMolE..17..368F. doi:10.1007/BF01734359. PMID 7288891. S2CID 8024924.
Hasegawa M, Kishino H, Yano T (1985). "Dating of the human-ape splitting by a molecular clock of mitochondrial DNA". Journal of Molecular Evolution. 22 (2): 160–74. Bibcode:1985JMolE..22..160H. doi:10.1007/BF02101694. PMID 3934395. S2CID 25554168.
Kishino H, Hasegawa M (August 1989). "Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea". Journal of Molecular Evolution. 29 (2): 170–9. Bibcode:1989JMolE..29..170K. doi:10.1007/BF02100115. PMID 2509717. S2CID 8045061.

worldcat.org

search.worldcat.org

Arenas, Miguel (2015). "Trends in substitution models of molecular evolution". Frontiers in Genetics. 6: 319. doi:10.3389/fgene.2015.00319. ISSN 1664-8021. PMC 4620419. PMID 26579193.