Phyre (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Phyre" in English language version.

refsWebsite

Global rank English rank

14nih.gov

4^th place

10doi.org

2^nd place

5ic.ac.uk

low place

9,602^nd place

3semanticscholar.org

11^th place

8^th place

2google.de

2,106^th place

low place

2worldcat.org

5^th place

2web.archive.org

1^st place

1imperial.ac.uk

7,025^th place

4,914^th place

1handle.net

102^nd place

76^th place

1openwetware.org

low place

1cancerresearchuk.org

8,489^th place

6,122^nd place

1ucl.ac.uk

1,306^th place

885^th place

1sussex.ac.uk

6,651^st place

4,464^th place

1riccardos.net

low place

cancerresearchuk.org

bmm.cancerresearchuk.org

"Biomolecular Modelling laboratory". Archived from the original on 2011-09-29. Retrieved 2011-03-09.

doi.org

Kelley, L. A.; Sternberg, M. J. E. (2009). "Protein structure prediction on the Web: A case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157. PMID 19247286. S2CID 12497300.
Bennett-Lovsey, R. M.; Herbert, A. D.; Sternberg, M. J. E.; Kelley, L. A. (2007). "Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre". Proteins: Structure, Function, and Bioinformatics. 70 (3): 611–25. doi:10.1002/prot.21688. PMID 17876813. S2CID 23530683.
McGuffin, L. J.; Bryson, K.; Jones, D. T. (2000). "The PSIPRED protein structure prediction server". Bioinformatics. 16 (4): 404–5. doi:10.1093/bioinformatics/16.4.404. PMID 10869041.
Jones, D. T.; Ward, J. J. (2003). "Prediction of disordered regions in proteins from position specific score matrices". Proteins: Structure, Function, and Genetics. 53: 573–8. doi:10.1002/prot.10528. PMID 14579348. S2CID 6081008.
Wass, M. N.; Kelley, L. A.; Sternberg, M. J. E. (2010). "3DLigand Site: Predicting ligand-binding sites using similar structures". Nucleic Acids Research. 38 (Web Server issue): W469–W473. doi:10.1093/nar/gkq406. PMC 2896164. PMID 20513649.
Jones, D. T. (2007). "Improving the accuracy of transmembrane protein topology prediction using evolutionary information". Bioinformatics. 23 (5): 538–44. doi:10.1093/bioinformatics/btl677. PMID 17237066.
Jefferys, B. R.; Kelley, L. A.; Sternberg, M. J. E. (2010). "Protein Folding Requires Crowd Control in a Simulated Cell". Journal of Molecular Biology. 397 (5): 1329–38. doi:10.1016/j.jmb.2010.01.074. PMC 2891488. PMID 20149797.
Ofoegbu, Tochukwu C.; David, Alessia; Kelley, Lawrence A.; Mezulis, Stefans; Islam, Suhail A.; Mersmann, Sophia F.; Strömich, Léonie; Vakser, Ilya A.; Houlston, Richard S.; Sternberg, Michael J.E. (2019). "PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants". Journal of Molecular Biology. 431 (13): 2460–2466. doi:10.1016/j.jmb.2019.04.043. ISSN 0022-2836. PMC 6597944. PMID 31075275.
Ittisoponpisan, Sirawit; Islam, Suhail A.; Khanna, Tarun; Alhuzimi, Eman; David, Alessia; Sternberg, Michael J.E. (2019). "Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?". Journal of Molecular Biology. 431 (11): 2197–2212. doi:10.1016/j.jmb.2019.04.009. ISSN 0022-2836. PMC 6544567. PMID 30995449.
Kelley, L. A.; MacCallum, R. M.; Sternberg, M. J. E. (2000). "Enhanced genome annotation using structural profiles in the program 3D-PSSM". Journal of Molecular Biology. 299 (2): 501–522. doi:10.1006/jmbi.2000.3741. PMID 10860755.

google.de

scholar.google.de

Number of results returned from a search on Google Scholar (Google Scholar search)
Number of results returned from a search on Google Scholar. (Google Scholar search)

handle.net

hdl.handle.net

Kelley, L. A.; Sternberg, M. J. E. (2009). "Protein structure prediction on the Web: A case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157. PMID 19247286. S2CID 12497300.

ic.ac.uk

sbg.bio.ic.ac.uk

Lawrence Kelley; Riccardo Bennett-Lovsey; Alex Herbert; Kieran Fleming. "Phyre: Protein Homology/analogY Recognition Engine". Structural Bioinformatics Group, Imperial College, London. Retrieved 22 April 2011.
Kelley, Lawrence; Jefferys, Benjamin. "Phyre2: Protein Homology/analogY Recognition Engine V 2.0". Structural Bioinformatics Group, Imperial College, London. Retrieved 22 April 2011.
"Help: About PHYRE2". PHYRE Protein Fold Recognition Server. The work on developing the Phyre2 web server is supported by a BBSRC tools and resources grant
Dr. Lawrence Kelley
Structural Bioinformatics Group

imperial.ac.uk

spiral.imperial.ac.uk

Kelley, L. A.; Sternberg, M. J. E. (2009). "Protein structure prediction on the Web: A case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157. PMID 19247286. S2CID 12497300.

nih.gov

pubmed.ncbi.nlm.nih.gov

Kelley, L. A.; Sternberg, M. J. E. (2009). "Protein structure prediction on the Web: A case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157. PMID 19247286. S2CID 12497300.
Bennett-Lovsey, R. M.; Herbert, A. D.; Sternberg, M. J. E.; Kelley, L. A. (2007). "Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre". Proteins: Structure, Function, and Bioinformatics. 70 (3): 611–25. doi:10.1002/prot.21688. PMID 17876813. S2CID 23530683.
McGuffin, L. J.; Bryson, K.; Jones, D. T. (2000). "The PSIPRED protein structure prediction server". Bioinformatics. 16 (4): 404–5. doi:10.1093/bioinformatics/16.4.404. PMID 10869041.
Jones, D. T.; Ward, J. J. (2003). "Prediction of disordered regions in proteins from position specific score matrices". Proteins: Structure, Function, and Genetics. 53: 573–8. doi:10.1002/prot.10528. PMID 14579348. S2CID 6081008.
Wass, M. N.; Kelley, L. A.; Sternberg, M. J. E. (2010). "3DLigand Site: Predicting ligand-binding sites using similar structures". Nucleic Acids Research. 38 (Web Server issue): W469–W473. doi:10.1093/nar/gkq406. PMC 2896164. PMID 20513649.
Jones, D. T. (2007). "Improving the accuracy of transmembrane protein topology prediction using evolutionary information". Bioinformatics. 23 (5): 538–44. doi:10.1093/bioinformatics/btl677. PMID 17237066.
Jefferys, B. R.; Kelley, L. A.; Sternberg, M. J. E. (2010). "Protein Folding Requires Crowd Control in a Simulated Cell". Journal of Molecular Biology. 397 (5): 1329–38. doi:10.1016/j.jmb.2010.01.074. PMC 2891488. PMID 20149797.
Ofoegbu, Tochukwu C.; David, Alessia; Kelley, Lawrence A.; Mezulis, Stefans; Islam, Suhail A.; Mersmann, Sophia F.; Strömich, Léonie; Vakser, Ilya A.; Houlston, Richard S.; Sternberg, Michael J.E. (2019). "PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants". Journal of Molecular Biology. 431 (13): 2460–2466. doi:10.1016/j.jmb.2019.04.043. ISSN 0022-2836. PMC 6597944. PMID 31075275.
Ittisoponpisan, Sirawit; Islam, Suhail A.; Khanna, Tarun; Alhuzimi, Eman; David, Alessia; Sternberg, Michael J.E. (2019). "Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?". Journal of Molecular Biology. 431 (11): 2197–2212. doi:10.1016/j.jmb.2019.04.009. ISSN 0022-2836. PMC 6544567. PMID 30995449.
Kelley, L. A.; MacCallum, R. M.; Sternberg, M. J. E. (2000). "Enhanced genome annotation using structural profiles in the program 3D-PSSM". Journal of Molecular Biology. 299 (2): 501–522. doi:10.1006/jmbi.2000.3741. PMID 10860755.

ncbi.nlm.nih.gov

Wass, M. N.; Kelley, L. A.; Sternberg, M. J. E. (2010). "3DLigand Site: Predicting ligand-binding sites using similar structures". Nucleic Acids Research. 38 (Web Server issue): W469–W473. doi:10.1093/nar/gkq406. PMC 2896164. PMID 20513649.
Jefferys, B. R.; Kelley, L. A.; Sternberg, M. J. E. (2010). "Protein Folding Requires Crowd Control in a Simulated Cell". Journal of Molecular Biology. 397 (5): 1329–38. doi:10.1016/j.jmb.2010.01.074. PMC 2891488. PMID 20149797.
Ofoegbu, Tochukwu C.; David, Alessia; Kelley, Lawrence A.; Mezulis, Stefans; Islam, Suhail A.; Mersmann, Sophia F.; Strömich, Léonie; Vakser, Ilya A.; Houlston, Richard S.; Sternberg, Michael J.E. (2019). "PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants". Journal of Molecular Biology. 431 (13): 2460–2466. doi:10.1016/j.jmb.2019.04.043. ISSN 0022-2836. PMC 6597944. PMID 31075275.
Ittisoponpisan, Sirawit; Islam, Suhail A.; Khanna, Tarun; Alhuzimi, Eman; David, Alessia; Sternberg, Michael J.E. (2019). "Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?". Journal of Molecular Biology. 431 (11): 2197–2212. doi:10.1016/j.jmb.2019.04.009. ISSN 0022-2836. PMC 6544567. PMID 30995449.

openwetware.org

Dr. Bob Maccallum

riccardos.net

Dr. Riccardo Bennett-Lovsey

semanticscholar.org

api.semanticscholar.org

Kelley, L. A.; Sternberg, M. J. E. (2009). "Protein structure prediction on the Web: A case study using the Phyre server" (PDF). Nature Protocols. 4 (3): 363–71. doi:10.1038/nprot.2009.2. hdl:10044/1/18157. PMID 19247286. S2CID 12497300.
Bennett-Lovsey, R. M.; Herbert, A. D.; Sternberg, M. J. E.; Kelley, L. A. (2007). "Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre". Proteins: Structure, Function, and Bioinformatics. 70 (3): 611–25. doi:10.1002/prot.21688. PMID 17876813. S2CID 23530683.
Jones, D. T.; Ward, J. J. (2003). "Prediction of disordered regions in proteins from position specific score matrices". Proteins: Structure, Function, and Genetics. 53: 573–8. doi:10.1002/prot.10528. PMID 14579348. S2CID 6081008.

sussex.ac.uk

Dr. Alex Herbert^{[permanent dead link]}

ucl.ac.uk

ccs.chem.ucl.ac.uk

"Dr. Benjamin Jefferys". Archived from the original on 2011-04-18. Retrieved 2011-03-28.

web.archive.org

"Biomolecular Modelling laboratory". Archived from the original on 2011-09-29. Retrieved 2011-03-09.
"Dr. Benjamin Jefferys". Archived from the original on 2011-04-18. Retrieved 2011-03-28.

worldcat.org

search.worldcat.org

Ofoegbu, Tochukwu C.; David, Alessia; Kelley, Lawrence A.; Mezulis, Stefans; Islam, Suhail A.; Mersmann, Sophia F.; Strömich, Léonie; Vakser, Ilya A.; Houlston, Richard S.; Sternberg, Michael J.E. (2019). "PhyreRisk: A Dynamic Web Application to Bridge Genomics, Proteomics and 3D Structural Data to Guide Interpretation of Human Genetic Variants". Journal of Molecular Biology. 431 (13): 2460–2466. doi:10.1016/j.jmb.2019.04.043. ISSN 0022-2836. PMC 6597944. PMID 31075275.
Ittisoponpisan, Sirawit; Islam, Suhail A.; Khanna, Tarun; Alhuzimi, Eman; David, Alessia; Sternberg, Michael J.E. (2019). "Can Predicted Protein 3D Structures Provide Reliable Insights into whether Missense Variants Are Disease Associated?". Journal of Molecular Biology. 431 (11): 2197–2212. doi:10.1016/j.jmb.2019.04.009. ISSN 0022-2836. PMC 6544567. PMID 30995449.