Residue depth (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Residue depth" in English language version.

refsWebsite

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12nih.gov

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8doi.org

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2harvard.edu

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2semanticscholar.org

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doi.org

Chakravarty, S.; Varadarajan, R (1999), "Residue depth: a novel parameter for the analysis of protein structure and stability", Structure, 7 (7): 723–732, doi:10.1016/s0969-2126(99)80097-5, PMID 10425675.
Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth as a descriptor of the protein interior", Biophys. J., 84 (4): 2553–2561, Bibcode:2003BpJ....84.2553P, doi:10.1016/S0006-3495(03)75060-7, PMC 1302821, PMID 12668463.
Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth in protein structure and function", Trends Biochem Sci, 28 (11): 593–597, doi:10.1016/j.tibs.2003.09.004, PMID 14607089.
Tan, K. P.; Varadarajan, R.; Madhusudhan, M. S. (16 May 2011). "DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins". Nucleic Acids Research. 39 (Web Server): W242 – W248. doi:10.1093/nar/gkr356. PMC 3125764. PMID 21576233.
Yuan, Z.; Wang, ZX. (2008), "Quantifying the relationship of protein burying depth and sequence", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.
Zhang, H.; Zhang, T.; Chen, K.; Shen, S.; Ruan, J.; Kurgan, L. (2008), "Sequence based residue depth prediction using evolutionary information and predicted secondary structure", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.
Song, J.; Tan, H.; Mahmood, K.; Law, R.H.; Buckle, A.M.; Webb, G.I.; Akutsu, T.; Whisstock, J.C. (2009), "Prodepth: predict residue depth by support vector regression approach from protein sequences only", PLOS ONE, 4 (9): e7072, Bibcode:2009PLoSO...4.7072S, doi:10.1371/journal.pone.0007072, PMC 2742725, PMID 19759917.
Tan, K.P.; Nguyen, T.B.; Patel, S.; Varadarajan, R.; Madhusudhan, M.S. (2013), "Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins", Nucleic Acids Research, 41 (W1): W314-321, doi:10.1093/nar/gkt503, PMC 3692129, PMID 23766289

harvard.edu

ui.adsabs.harvard.edu

Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth as a descriptor of the protein interior", Biophys. J., 84 (4): 2553–2561, Bibcode:2003BpJ....84.2553P, doi:10.1016/S0006-3495(03)75060-7, PMC 1302821, PMID 12668463.
Song, J.; Tan, H.; Mahmood, K.; Law, R.H.; Buckle, A.M.; Webb, G.I.; Akutsu, T.; Whisstock, J.C. (2009), "Prodepth: predict residue depth by support vector regression approach from protein sequences only", PLOS ONE, 4 (9): e7072, Bibcode:2009PLoSO...4.7072S, doi:10.1371/journal.pone.0007072, PMC 2742725, PMID 19759917.

nih.gov

pubmed.ncbi.nlm.nih.gov

Chakravarty, S.; Varadarajan, R (1999), "Residue depth: a novel parameter for the analysis of protein structure and stability", Structure, 7 (7): 723–732, doi:10.1016/s0969-2126(99)80097-5, PMID 10425675.
Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth as a descriptor of the protein interior", Biophys. J., 84 (4): 2553–2561, Bibcode:2003BpJ....84.2553P, doi:10.1016/S0006-3495(03)75060-7, PMC 1302821, PMID 12668463.
Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth in protein structure and function", Trends Biochem Sci, 28 (11): 593–597, doi:10.1016/j.tibs.2003.09.004, PMID 14607089.
Tan, K. P.; Varadarajan, R.; Madhusudhan, M. S. (16 May 2011). "DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins". Nucleic Acids Research. 39 (Web Server): W242 – W248. doi:10.1093/nar/gkr356. PMC 3125764. PMID 21576233.
Yuan, Z.; Wang, ZX. (2008), "Quantifying the relationship of protein burying depth and sequence", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.
Zhang, H.; Zhang, T.; Chen, K.; Shen, S.; Ruan, J.; Kurgan, L. (2008), "Sequence based residue depth prediction using evolutionary information and predicted secondary structure", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.
Song, J.; Tan, H.; Mahmood, K.; Law, R.H.; Buckle, A.M.; Webb, G.I.; Akutsu, T.; Whisstock, J.C. (2009), "Prodepth: predict residue depth by support vector regression approach from protein sequences only", PLOS ONE, 4 (9): e7072, Bibcode:2009PLoSO...4.7072S, doi:10.1371/journal.pone.0007072, PMC 2742725, PMID 19759917.
Tan, K.P.; Nguyen, T.B.; Patel, S.; Varadarajan, R.; Madhusudhan, M.S. (2013), "Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins", Nucleic Acids Research, 41 (W1): W314-321, doi:10.1093/nar/gkt503, PMC 3692129, PMID 23766289

ncbi.nlm.nih.gov

Pintar, A.; Carugo, O.; Pongor, S. (2003), "Atom depth as a descriptor of the protein interior", Biophys. J., 84 (4): 2553–2561, Bibcode:2003BpJ....84.2553P, doi:10.1016/S0006-3495(03)75060-7, PMC 1302821, PMID 12668463.
Tan, K. P.; Varadarajan, R.; Madhusudhan, M. S. (16 May 2011). "DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins". Nucleic Acids Research. 39 (Web Server): W242 – W248. doi:10.1093/nar/gkr356. PMC 3125764. PMID 21576233.
Song, J.; Tan, H.; Mahmood, K.; Law, R.H.; Buckle, A.M.; Webb, G.I.; Akutsu, T.; Whisstock, J.C. (2009), "Prodepth: predict residue depth by support vector regression approach from protein sequences only", PLOS ONE, 4 (9): e7072, Bibcode:2009PLoSO...4.7072S, doi:10.1371/journal.pone.0007072, PMC 2742725, PMID 19759917.
Tan, K.P.; Nguyen, T.B.; Patel, S.; Varadarajan, R.; Madhusudhan, M.S. (2013), "Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins", Nucleic Acids Research, 41 (W1): W314-321, doi:10.1093/nar/gkt503, PMC 3692129, PMID 23766289

semanticscholar.org

api.semanticscholar.org

Yuan, Z.; Wang, ZX. (2008), "Quantifying the relationship of protein burying depth and sequence", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.
Zhang, H.; Zhang, T.; Chen, K.; Shen, S.; Ruan, J.; Kurgan, L. (2008), "Sequence based residue depth prediction using evolutionary information and predicted secondary structure", Proteins, 70 (2): 509–516, doi:10.1002/prot.21545, PMID 17705271, S2CID 31392217.