Structural Classification of Proteins database (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Structural Classification of Proteins database" in English language version.

refsWebsite

Global rank English rank

23nih.gov

4^th place

13doi.org

2^nd place

1web.archive.org

1^st place

1cam.ac.uk

670^th place

480^th place

1rcsb.org

8,838^th place

8,783^rd place

1berkeley.edu

580^th place

462^nd place

1harvard.edu

18^th place

17^th place

1swmed.edu

low place

berkeley.edu

scop.berkeley.edu

"What is the relationship between SCOP, SCOPe, and SCOP2". scop.berkeley.edu. Retrieved 2015-08-22.

cam.ac.uk

scop.mrc-lmb.cam.ac.uk

Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures" (PDF). Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011. Archived from the original (PDF) on 2012-04-26.

doi.org

Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2008). "Data growth and its impact on the SCOP database: new developments". Nucleic Acids Research. 36 (Database issue): D419-25. doi:10.1093/nar/gkm993. PMC 2238974. PMID 18000004.
Chandonia JM, Fox NK, Brenner SE (January 2019). "SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database". Nucleic Acids Research. 47 (D1): D475 – D481. doi:10.1093/nar/gky1134. PMC 6323910. PMID 30500919.
Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures". Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011.
Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C (January 1999). "SCOP: a Structural Classification of Proteins database". Nucleic Acids Research. 27 (1): 254–6. doi:10.1093/nar/27.1.254. PMC 148149. PMID 9847194.
Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C (January 2000). "SCOP: a structural classification of proteins database". Nucleic Acids Research. 28 (1): 257–9. doi:10.1093/nar/28.1.257. PMC 102479. PMID 10592240.
Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2004). "SCOP database in 2004: refinements integrate structure and sequence family data". Nucleic Acids Research. 32 (Database issue): D226-9. doi:10.1093/nar/gkh039. PMC 308773. PMID 14681400.
Andreeva A, Kulesha E, Gough J, Murzin AG (January 2020). "SCOP database in 2020: : expanded classification of representative family and superfamily domains of known protein structures". Nucleic Acids Research. 48 (Database issue): D376 – D382. doi:10.1093/nar/gkz1064. PMC 7139981. PMID 31724711.
Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures" (PDF). Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011. Archived from the original (PDF) on 2012-04-26.
PDB: 2DN1; Park SY, Yokoyama T, Shibayama N, Shiro Y, Tame JR (July 2006). "1.25 A resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms". Journal of Molecular Biology. 360 (3): 690–701. doi:10.1016/j.jmb.2006.05.036. PMID 16765986.
Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2002). "SCOP database in 2002: refinements accommodate structural genomics". Nucleic Acids Research. 30 (1): 264–7. doi:10.1093/nar/30.1.264. PMC 99154. PMID 11752311.
Andreeva A, Howorth D, Chothia C, Kulesha E, Murzin AG (January 2014). "SCOP2 prototype: a new approach to protein structure mining". Nucleic Acids Research. 42 (Database issue): D310-4. doi:10.1093/nar/gkt1242. PMC 3964979. PMID 24293656.
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV (December 2014). "ECOD: an evolutionary classification of protein domains". PLOS Computational Biology. 10 (12): e1003926. Bibcode:2014PLSCB..10E3926C. doi:10.1371/journal.pcbi.1003926. PMC 4256011. PMID 25474468.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer EL, Hirsh L, Paladin L, Piovesan D, Tosatto SC, Finn RD (January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427 – D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.

harvard.edu

ui.adsabs.harvard.edu

Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV (December 2014). "ECOD: an evolutionary classification of protein domains". PLOS Computational Biology. 10 (12): e1003926. Bibcode:2014PLSCB..10E3926C. doi:10.1371/journal.pcbi.1003926. PMC 4256011. PMID 25474468.

nih.gov

pubmed.ncbi.nlm.nih.gov

Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2008). "Data growth and its impact on the SCOP database: new developments". Nucleic Acids Research. 36 (Database issue): D419-25. doi:10.1093/nar/gkm993. PMC 2238974. PMID 18000004.
Chandonia JM, Fox NK, Brenner SE (January 2019). "SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database". Nucleic Acids Research. 47 (D1): D475 – D481. doi:10.1093/nar/gky1134. PMC 6323910. PMID 30500919.
Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures". Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011.
Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C (January 1999). "SCOP: a Structural Classification of Proteins database". Nucleic Acids Research. 27 (1): 254–6. doi:10.1093/nar/27.1.254. PMC 148149. PMID 9847194.
Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C (January 2000). "SCOP: a structural classification of proteins database". Nucleic Acids Research. 28 (1): 257–9. doi:10.1093/nar/28.1.257. PMC 102479. PMID 10592240.
Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2004). "SCOP database in 2004: refinements integrate structure and sequence family data". Nucleic Acids Research. 32 (Database issue): D226-9. doi:10.1093/nar/gkh039. PMC 308773. PMID 14681400.
Andreeva A, Kulesha E, Gough J, Murzin AG (January 2020). "SCOP database in 2020: : expanded classification of representative family and superfamily domains of known protein structures". Nucleic Acids Research. 48 (Database issue): D376 – D382. doi:10.1093/nar/gkz1064. PMC 7139981. PMID 31724711.
Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures" (PDF). Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011. Archived from the original (PDF) on 2012-04-26.
PDB: 2DN1; Park SY, Yokoyama T, Shibayama N, Shiro Y, Tame JR (July 2006). "1.25 A resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms". Journal of Molecular Biology. 360 (3): 690–701. doi:10.1016/j.jmb.2006.05.036. PMID 16765986.
Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2002). "SCOP database in 2002: refinements accommodate structural genomics". Nucleic Acids Research. 30 (1): 264–7. doi:10.1093/nar/30.1.264. PMC 99154. PMID 11752311.
Andreeva A, Howorth D, Chothia C, Kulesha E, Murzin AG (January 2014). "SCOP2 prototype: a new approach to protein structure mining". Nucleic Acids Research. 42 (Database issue): D310-4. doi:10.1093/nar/gkt1242. PMC 3964979. PMID 24293656.
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV (December 2014). "ECOD: an evolutionary classification of protein domains". PLOS Computational Biology. 10 (12): e1003926. Bibcode:2014PLSCB..10E3926C. doi:10.1371/journal.pcbi.1003926. PMC 4256011. PMID 25474468.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer EL, Hirsh L, Paladin L, Piovesan D, Tosatto SC, Finn RD (January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427 – D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.

ncbi.nlm.nih.gov

Andreeva A, Howorth D, Chandonia JM, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2008). "Data growth and its impact on the SCOP database: new developments". Nucleic Acids Research. 36 (Database issue): D419-25. doi:10.1093/nar/gkm993. PMC 2238974. PMID 18000004.
Chandonia JM, Fox NK, Brenner SE (January 2019). "SCOPe: classification of large macromolecular structures in the structural classification of proteins-extended database". Nucleic Acids Research. 47 (D1): D475 – D481. doi:10.1093/nar/gky1134. PMC 6323910. PMID 30500919.
Hubbard TJ, Ailey B, Brenner SE, Murzin AG, Chothia C (January 1999). "SCOP: a Structural Classification of Proteins database". Nucleic Acids Research. 27 (1): 254–6. doi:10.1093/nar/27.1.254. PMC 148149. PMID 9847194.
Lo Conte L, Ailey B, Hubbard TJ, Brenner SE, Murzin AG, Chothia C (January 2000). "SCOP: a structural classification of proteins database". Nucleic Acids Research. 28 (1): 257–9. doi:10.1093/nar/28.1.257. PMC 102479. PMID 10592240.
Andreeva A, Howorth D, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2004). "SCOP database in 2004: refinements integrate structure and sequence family data". Nucleic Acids Research. 32 (Database issue): D226-9. doi:10.1093/nar/gkh039. PMC 308773. PMID 14681400.
Andreeva A, Kulesha E, Gough J, Murzin AG (January 2020). "SCOP database in 2020: : expanded classification of representative family and superfamily domains of known protein structures". Nucleic Acids Research. 48 (Database issue): D376 – D382. doi:10.1093/nar/gkz1064. PMC 7139981. PMID 31724711.
Lo Conte L, Brenner SE, Hubbard TJ, Chothia C, Murzin AG (January 2002). "SCOP database in 2002: refinements accommodate structural genomics". Nucleic Acids Research. 30 (1): 264–7. doi:10.1093/nar/30.1.264. PMC 99154. PMID 11752311.
Andreeva A, Howorth D, Chothia C, Kulesha E, Murzin AG (January 2014). "SCOP2 prototype: a new approach to protein structure mining". Nucleic Acids Research. 42 (Database issue): D310-4. doi:10.1093/nar/gkt1242. PMC 3964979. PMID 24293656.
Cheng H, Schaeffer RD, Liao Y, Kinch LN, Pei J, Shi S, Kim BH, Grishin NV (December 2014). "ECOD: an evolutionary classification of protein domains". PLOS Computational Biology. 10 (12): e1003926. Bibcode:2014PLSCB..10E3926C. doi:10.1371/journal.pcbi.1003926. PMC 4256011. PMID 25474468.
El-Gebali S, Mistry J, Bateman A, Eddy SR, Luciani A, Potter SC, Qureshi M, Richardson LJ, Salazar GA, Smart A, Sonnhammer EL, Hirsh L, Paladin L, Piovesan D, Tosatto SC, Finn RD (January 2019). "The Pfam protein families database in 2019". Nucleic Acids Research. 47 (D1): D427 – D432. doi:10.1093/nar/gky995. PMC 6324024. PMID 30357350.

rcsb.org

PDB: 2DN1; Park SY, Yokoyama T, Shibayama N, Shiro Y, Tame JR (July 2006). "1.25 A resolution crystal structures of human haemoglobin in the oxy, deoxy and carbonmonoxy forms". Journal of Molecular Biology. 360 (3): 690–701. doi:10.1016/j.jmb.2006.05.036. PMID 16765986.

swmed.edu

prodata.swmed.edu

"Evolutionary Classification of Protein Domains". prodata.swmed.edu. Retrieved 18 May 2019.

web.archive.org

Murzin AG, Brenner SE, Hubbard T, Chothia C (April 1995). "SCOP: a structural classification of proteins database for the investigation of sequences and structures" (PDF). Journal of Molecular Biology. 247 (4): 536–40. doi:10.1016/S0022-2836(05)80134-2. PMID 7723011. Archived from the original (PDF) on 2012-04-26.