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Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D (November 1999). "A combined algorithm for genome-wide prediction of protein function". Nature402 (6757): 83–6. Bibcode:1999Natur.402...83M. PMID10573421. doi:10.1038/47048.
Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B (July 2008). "Mapping and quantifying mammalian transcriptomes by RNA-Seq". Nature Methods5 (7): 621–8. PMID18516045. doi:10.1038/nmeth.1226.
Garalde DR, Snell EA, Jachimowicz D, Sipos B, Lloyd JH, Bruce M, et al. (March 2018). "Highly parallel direct RNA sequencing on an array of nanopores". Nature Methods15 (3): 201–206. PMID29334379. doi:10.1038/nmeth.4577.
"Shapiro E, Biezuner T, Linnarsson S (September 2013). "Single-cell sequencing-based technologies will revolutionize whole-organism science". Nature Reviews. Genetics14 (9): 618–30. PMID23897237. doi:10.1038/nrg3542."
Kolodziejczyk AA, Kim JK, Svensson V, Marioni JC, Teichmann SA (May 2015). "The technology and biology of single-cell RNA sequencing". Molecular Cell58 (4): 610–20. PMID26000846. doi:10.1016/j.molcel.2015.04.005.
Eberwine J, Sul JY, Bartfai T, Kim J (January 2014). "The promise of single-cell sequencing". Nature Methods11 (1): 25–7. PMID24524134. doi:10.1038/nmeth.2769.
Tang F, Barbacioru C, Wang Y, Nordman E, Lee C, Xu N, et al. (May 2009). "mRNA-Seq whole-transcriptome analysis of a single cell". Nature Methods6 (5): 377–82. PMID19349980. doi:10.1038/NMETH.1315.
Dal Molin A, Di Camillo B (January 2018). "How to design a single-cell RNA-sequencing experiment: pitfalls, challenges and perspectives". Briefings in Bioinformatics: bby007. PMID29394315. doi:10.1093/bib/bby007.
Peterson VM, Zhang KX, Kumar N, Wong J, Li L, Wilson DC, et al. (October 2017). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology35 (10): 936–939. PMID28854175. doi:10.1038/nbt.3973.
Olmos D, Arkenau HT, Ang JE, Ledaki I, Attard G, Carden CP, et al. (January 2009). "Circulating tumour cell (CTC) counts as intermediate end points in castration-resistant prostate cancer (CRPC): a single-centre experience". Annals of Oncology20 (1): 27–33. PMID18695026. doi:10.1093/annonc/mdn544.
Wu TD, Watanabe CK (May 2005). "GMAP: a genomic mapping and alignment program for mRNA and EST sequences". Bioinformatics21 (9): 1859–75. PMID15728110. doi:10.1093/bioinformatics/bti310.
Lu B, Zeng Z, Shi T (February 2013). "Comparative study of de novo assembly and genome-guided assembly strategies for transcriptome reconstruction based on RNA-Seq". Science China Life Sciences56 (2): 143–55. PMID23393030. doi:10.1007/s11427-013-4442-z.
Liao Y, Smyth GK, Shi W (April 2014). "featureCounts: an efficient general purpose program for assigning sequence reads to genomic features". Bioinformatics30 (7): 923–30. PMID24227677. arXiv:1305.3347. doi:10.1093/bioinformatics/btt656.
Wagner GP, Kin K, Lynch VJ (December 2012). "Measurement of mRNA abundance using RNA-seq data: RPKM measure is inconsistent among samples". Theory in Biosciences = Theorie in den Biowissenschaften131 (4): 281–5. PMID22872506. doi:10.1007/s12064-012-0162-3.
Wang X, Cairns MJ (June 2014). "SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing". Bioinformatics30 (12): 1777–9. PMID24535097. doi:10.1093/bioinformatics/btu090.
Merino GA, Conesa A, Fernández EA (March 2019). "A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies". Briefings in Bioinformatics20 (2): 471–481. PMID29040385. doi:10.1093/bib/bbx122.
Marcotte EM, Pellegrini M, Thompson MJ, Yeates TO, Eisenberg D (November 1999). "A combined algorithm for genome-wide prediction of protein function". Nature402 (6757): 83–6. Bibcode:1999Natur.402...83M. PMID10573421. doi:10.1038/47048.
Giorgi FM, Del Fabbro C, Licausi F (March 2013). "Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana". Bioinformatics29 (6): 717–24. PMID23376351. doi:10.1093/bioinformatics/btt053.