医薬品設計 (Japanese Wikipedia)

Analysis of information sources in references of the Wikipedia article "医薬品設計" in Japanese language version.

refsWebsite

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40nih.gov

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4books.google.com

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2worldcat.org

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2harvard.edu

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1jstor.org

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1wikipedia.org

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1ssrn.com

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1scripps.edu

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1amitray.com

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amitray.com

“7 Limitations of Molecular Docking & Computer Aided Drug Design and Discovery”. Inner Light Publishers. 21 Oct 2018閲覧。

books.google.com

doi.org

Fosgerau, Keld; Hoffmann, Torsten (2015-01-01). “Peptide therapeutics: current status and future directions” (英語). Drug Discovery Today 20 (1): 122–128. doi:10.1016/j.drudis.2014.10.003. ISSN 1359-6446. PMID 25450771.
Ciemny, Maciej; Kurcinski, Mateusz; Kamel, Karol; Kolinski, Andrzej; Alam, Nawsad; Schueler-Furman, Ora; Kmiecik, Sebastian (2018-05-04). “Protein–peptide docking: opportunities and challenges” (英語). Drug Discovery Today 23 (8): 1530–1537. doi:10.1016/j.drudis.2018.05.006. ISSN 1359-6446. PMID 29733895.
Shirai H, Prades C, Vita R, Marcatili P, Popovic B, Xu J, Overington JP, Hirayama K, Soga S, Tsunoyama K, Clark D, Lefranc MP, Ikeda K (Nov 2014). “Antibody informatics for drug discovery”. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1844 (11): 2002–2015. doi:10.1016/j.bbapap.2014.07.006. PMID 25110827.
Tollenaere JP (Apr 1996). “The role of structure-based ligand design and molecular modelling in drug discovery”. Pharmacy World & Science 18 (2): 56–62. doi:10.1007/BF00579706. PMID 8739258.
Waring MJ, Arrowsmith J, Leach AR, Leeson PD, Mandrell S, Owen RM, Pairaudeau G, Pennie WD, Pickett SD, Wang J, Wallace O, Weir A (2015). “An analysis of the attrition of drug candidates from four major pharmaceutical companies”. Nature Reviews Drug Discovery 14 (7): 475–86. doi:10.1038/nrd4609. PMID 26091267.
Yu H, Adedoyin A (Sep 2003). “ADME-Tox in drug discovery: integration of experimental and computational technologies”. Drug Discovery Today 8 (18): 852–61. doi:10.1016/S1359-6446(03)02828-9. PMID 12963322.
Dixon SJ, Stockwell BR (Dec 2009). “Identifying druggable disease-modifying gene products”. Current Opinion in Chemical Biology 13 (5–6): 549–55. doi:10.1016/j.cbpa.2009.08.003. PMC 2787993. PMID 19740696.
Imming P, Sinning C, Meyer A (Oct 2006). “Drugs, their targets and the nature and number of drug targets”. Nature Reviews. Drug Discovery 5 (10): 821–34. doi:10.1038/nrd2132. PMID 17016423.
Anderson AC (Sep 2003). “The process of structure-based drug design”. Chemistry & Biology 10 (9): 787–97. doi:10.1016/j.chembiol.2003.09.002. PMID 14522049.
Recanatini M, Bottegoni G, Cavalli A (Dec 2004). “In silico antitarget screening”. Drug Discovery Today: Technologies 1 (3): 209–15. doi:10.1016/j.ddtec.2004.10.004. PMID 24981487.
Scomparin A, Polyak D, Krivitsky A, Satchi-Fainaro R (Apr 2015). “Achieving successful delivery of oligonucleotides - From physico-chemical characterization to in vivo evaluation”. Biotechnology Advances 33 (6): 1294–309. doi:10.1016/j.biotechadv.2015.04.008. PMID 25916823.
Yuan Y, Pei J, Lai L (Dec 2013). “Binding site detection and druggability prediction of protein targets for structure-based drug design”. Current Pharmaceutical Design 19 (12): 2326–33. doi:10.2174/1381612811319120019. PMID 23082974.
Rishton GM (Jan 2003). “Nonleadlikeness and leadlikeness in biochemical screening”. Drug Discovery Today 8 (2): 86–96. doi:10.1016/s1359644602025722. PMID 12565011.
Nicolaou CA, Brown N (Sep 2013). “Multi-objective optimization methods in drug design”. Drug Discovery Today: Technologies 10 (3): 427–35. doi:10.1016/j.ddtec.2013.02.001. PMID 24050140.
Lewis, Richard A. (2011). “Chapter 4: The Development of Molecular Modelling Programs: The Use and Limitations of Physical Models”. Drug Design Strategies: Quantitative Approaches. RSC Drug Discovery. Royal Society of Chemistry. pp. 88–107. doi:10.1039/9781849733410-00088. ISBN 978-1849731669
Ghasemi, Pérez-Sánchez; Mehri, fassihi (2018). “Deep neural network in QSAR studies using deep belief network”. Applied Soft Computing 62: 251–259. doi:10.1016/j.asoc.2017.09.040.
de Azevedo WF, Dias R (Dec 2008). “Computational methods for calculation of ligand-binding affinity”. Current Drug Targets 9 (12): 1031–9. doi:10.2174/138945008786949405. PMID 19128212.
Singh J, Chuaqui CE, Boriack-Sjodin PA, Lee WC, Pontz T, Corbley MJ, Cheung HK, Arduini RM, Mead JN, Newman MN, Papadatos JL, Bowes S, Josiah S, Ling LE (Dec 2003). “Successful shape-based virtual screening: the discovery of a potent inhibitor of the type I TGFbeta receptor kinase (TbetaRI)”. Bioorganic & Medicinal Chemistry Letters 13 (24): 4355–9. doi:10.1016/j.bmcl.2003.09.028. PMID 14643325.
Becker OM, Dhanoa DS, Marantz Y, Chen D, Shacham S, Cheruku S, Heifetz A, Mohanty P, Fichman M, Sharadendu A, Nudelman R, Kauffman M, Noiman S (Jun 2006). “An integrated in silico 3D model-driven discovery of a novel, potent, and selective amidosulfonamide 5-HT1A agonist (PRX-00023) for the treatment of anxiety and depression”. Journal of Medicinal Chemistry 49 (11): 3116–35. doi:10.1021/jm0508641. PMID 16722631.
Liang S, Meroueh SO, Wang G, Qiu C, Zhou Y (May 2009). “Consensus scoring for enriching near-native structures from protein-protein docking decoys”. Proteins 75 (2): 397–403. doi:10.1002/prot.22252. PMC 2656599. PMID 18831053.
Oda A, Tsuchida K, Takakura T, Yamaotsu N, Hirono S (2006). “Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes”. Journal of Chemical Information and Modeling 46 (1): 380–91. doi:10.1021/ci050283k. PMID 16426072.
Deng Z, Chuaqui C, Singh J (Jan 2004). “Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions”. Journal of Medicinal Chemistry 47 (2): 337–44. doi:10.1021/jm030331x. PMID 14711306.
Amari S, Aizawa M, Zhang J, Fukuzawa K, Mochizuki Y, Iwasawa Y, Nakata K, Chuman H, Nakano T (2006). “VISCANA: visualized cluster analysis of protein-ligand interaction based on the ab initio fragment molecular orbital method for virtual ligand screening”. Journal of Chemical Information and Modeling 46 (1): 221–30. doi:10.1021/ci050262q. PMID 16426058.
Klebe G (2000). “Recent developments in structure-based drug design”. Journal of Molecular Medicine 78 (5): 269–81. doi:10.1007/s001090000084. PMID 10954199.
Wang R,Gao Y,Lai L (2000). “LigBuilder: A Multi-Purpose Program for Structure-Based Drug Design”. Journal of Molecular Modeling 6 (7–8): 498–516. doi:10.1007/s0089400060498.
Schneider G, Fechner U (Aug 2005). “Computer-based de novo design of drug-like molecules”. Nature Reviews. Drug Discovery 4 (8): 649–63. doi:10.1038/nrd1799. PMID 16056391.
Jorgensen WL (Mar 2004). “The many roles of computation in drug discovery”. Science 303 (5665): 1813–8. Bibcode: 2004Sci...303.1813J. doi:10.1126/science.1096361. PMID 15031495.
Leis S, Schneider S, Zacharias M (2010). “In silico prediction of binding sites on proteins”. Current Medicinal Chemistry 17 (15): 1550–62. doi:10.2174/092986710790979944. PMID 20166931.
Warren, Gregory L.; Warren, Stelphen D. (2011). “Chapter 16: Scoring Drug-Receptor Interactions”. Drug Design Strategies: Quantitative Approaches. Royal Society of Chemistry. pp. 440–457. doi:10.1039/9781849733410-00440. ISBN 978-1849731669
Böhm HJ (Jun 1994). “The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure”. Journal of Computer-Aided Molecular Design 8 (3): 243–56. Bibcode: 1994JCAMD...8..243B. doi:10.1007/BF00126743. PMID 7964925.
Liu, Jie; Wang, Renxiao (23 March 2015). “Classification of Current Scoring Functions”. Journal of Chemical Information and Modeling 55 (3): 475–482. doi:10.1021/ci500731a. PMID 25647463.
Ajay, Murcko MA (1995). “Computational methods to predict binding free energy in ligand-receptor complexes”. J. Med. Chem. 38 (26): 4953–67. doi:10.1021/jm00026a001. PMID 8544170.
Gramatica, Paolo (2011). “Chapter 17: Modeling Chemicals in the Environment”. Drug Design Strategies: Quantitative Approaches. RSC Drug Discovery. Royal Society of Chemistry. p. 466. doi:10.1039/9781849733410-00458. ISBN 978-1849731669
Greer J, Erickson JW, Baldwin JJ, Varney MD (1994). “Application of the three-dimensional structures of protein target molecules in structure-based drug design”. J. Med. Chem. 37 (8): 1035–1054. doi:10.1021/jm00034a001. PMID 8164249.
Capdeville R, Buchdunger E, Zimmermann J, Matter A (Jul 2002). “Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug”. Nature Reviews. Drug Discovery 1 (7): 493–502. doi:10.1038/nrd839. PMID 12120256.
Klein DF (Mar 2008). “The loss of serendipity in psychopharmacology”. JAMA 299 (9): 1063–5. doi:10.1001/jama.299.9.1063. PMID 18319418.

harvard.edu

ui.adsabs.harvard.edu

Jorgensen WL (Mar 2004). “The many roles of computation in drug discovery”. Science 303 (5665): 1813–8. Bibcode: 2004Sci...303.1813J. doi:10.1126/science.1096361. PMID 15031495.
Böhm HJ (Jun 1994). “The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure”. Journal of Computer-Aided Molecular Design 8 (3): 243–56. Bibcode: 1994JCAMD...8..243B. doi:10.1007/BF00126743. PMID 7964925.

jstor.org

Ethiraj, Sendil K.; Levinthal, Daniel (Sep 2004). “Bounded Rationality and the Search for Organizational Architecture: An Evolutionary Perspective on the Design of Organizations and Their Evolvability”. Administrative Science Quarterly (Sage Publications, Inc. on behalf of the Johnson Graduate School of Management, Cornell University) 49 (3): 404–437. JSTOR 4131441. SSRN 604123.

nih.gov

pubmed.ncbi.nlm.nih.gov

Fosgerau, Keld; Hoffmann, Torsten (2015-01-01). “Peptide therapeutics: current status and future directions” (英語). Drug Discovery Today 20 (1): 122–128. doi:10.1016/j.drudis.2014.10.003. ISSN 1359-6446. PMID 25450771.
Ciemny, Maciej; Kurcinski, Mateusz; Kamel, Karol; Kolinski, Andrzej; Alam, Nawsad; Schueler-Furman, Ora; Kmiecik, Sebastian (2018-05-04). “Protein–peptide docking: opportunities and challenges” (英語). Drug Discovery Today 23 (8): 1530–1537. doi:10.1016/j.drudis.2018.05.006. ISSN 1359-6446. PMID 29733895.
Shirai H, Prades C, Vita R, Marcatili P, Popovic B, Xu J, Overington JP, Hirayama K, Soga S, Tsunoyama K, Clark D, Lefranc MP, Ikeda K (Nov 2014). “Antibody informatics for drug discovery”. Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics 1844 (11): 2002–2015. doi:10.1016/j.bbapap.2014.07.006. PMID 25110827.
Tollenaere JP (Apr 1996). “The role of structure-based ligand design and molecular modelling in drug discovery”. Pharmacy World & Science 18 (2): 56–62. doi:10.1007/BF00579706. PMID 8739258.
Waring MJ, Arrowsmith J, Leach AR, Leeson PD, Mandrell S, Owen RM, Pairaudeau G, Pennie WD, Pickett SD, Wang J, Wallace O, Weir A (2015). “An analysis of the attrition of drug candidates from four major pharmaceutical companies”. Nature Reviews Drug Discovery 14 (7): 475–86. doi:10.1038/nrd4609. PMID 26091267.
Yu H, Adedoyin A (Sep 2003). “ADME-Tox in drug discovery: integration of experimental and computational technologies”. Drug Discovery Today 8 (18): 852–61. doi:10.1016/S1359-6446(03)02828-9. PMID 12963322.
Dixon SJ, Stockwell BR (Dec 2009). “Identifying druggable disease-modifying gene products”. Current Opinion in Chemical Biology 13 (5–6): 549–55. doi:10.1016/j.cbpa.2009.08.003. PMC 2787993. PMID 19740696.
Imming P, Sinning C, Meyer A (Oct 2006). “Drugs, their targets and the nature and number of drug targets”. Nature Reviews. Drug Discovery 5 (10): 821–34. doi:10.1038/nrd2132. PMID 17016423.
Anderson AC (Sep 2003). “The process of structure-based drug design”. Chemistry & Biology 10 (9): 787–97. doi:10.1016/j.chembiol.2003.09.002. PMID 14522049.
Recanatini M, Bottegoni G, Cavalli A (Dec 2004). “In silico antitarget screening”. Drug Discovery Today: Technologies 1 (3): 209–15. doi:10.1016/j.ddtec.2004.10.004. PMID 24981487.
Scomparin A, Polyak D, Krivitsky A, Satchi-Fainaro R (Apr 2015). “Achieving successful delivery of oligonucleotides - From physico-chemical characterization to in vivo evaluation”. Biotechnology Advances 33 (6): 1294–309. doi:10.1016/j.biotechadv.2015.04.008. PMID 25916823.
Yuan Y, Pei J, Lai L (Dec 2013). “Binding site detection and druggability prediction of protein targets for structure-based drug design”. Current Pharmaceutical Design 19 (12): 2326–33. doi:10.2174/1381612811319120019. PMID 23082974.
Rishton GM (Jan 2003). “Nonleadlikeness and leadlikeness in biochemical screening”. Drug Discovery Today 8 (2): 86–96. doi:10.1016/s1359644602025722. PMID 12565011.
Nicolaou CA, Brown N (Sep 2013). “Multi-objective optimization methods in drug design”. Drug Discovery Today: Technologies 10 (3): 427–35. doi:10.1016/j.ddtec.2013.02.001. PMID 24050140.
Ban TA (2006). “The role of serendipity in drug discovery”. Dialogues in Clinical Neuroscience 8 (3): 335–44. PMC 3181823. PMID 17117615.
Rajamani R, Good AC (May 2007). “Ranking poses in structure-based lead discovery and optimization: current trends in scoring function development”. Current Opinion in Drug Discovery & Development 10 (3): 308–15. PMID 17554857.
de Azevedo WF, Dias R (Dec 2008). “Computational methods for calculation of ligand-binding affinity”. Current Drug Targets 9 (12): 1031–9. doi:10.2174/138945008786949405. PMID 19128212.
Singh J, Chuaqui CE, Boriack-Sjodin PA, Lee WC, Pontz T, Corbley MJ, Cheung HK, Arduini RM, Mead JN, Newman MN, Papadatos JL, Bowes S, Josiah S, Ling LE (Dec 2003). “Successful shape-based virtual screening: the discovery of a potent inhibitor of the type I TGFbeta receptor kinase (TbetaRI)”. Bioorganic & Medicinal Chemistry Letters 13 (24): 4355–9. doi:10.1016/j.bmcl.2003.09.028. PMID 14643325.
Becker OM, Dhanoa DS, Marantz Y, Chen D, Shacham S, Cheruku S, Heifetz A, Mohanty P, Fichman M, Sharadendu A, Nudelman R, Kauffman M, Noiman S (Jun 2006). “An integrated in silico 3D model-driven discovery of a novel, potent, and selective amidosulfonamide 5-HT1A agonist (PRX-00023) for the treatment of anxiety and depression”. Journal of Medicinal Chemistry 49 (11): 3116–35. doi:10.1021/jm0508641. PMID 16722631.
Liang S, Meroueh SO, Wang G, Qiu C, Zhou Y (May 2009). “Consensus scoring for enriching near-native structures from protein-protein docking decoys”. Proteins 75 (2): 397–403. doi:10.1002/prot.22252. PMC 2656599. PMID 18831053.
Oda A, Tsuchida K, Takakura T, Yamaotsu N, Hirono S (2006). “Comparison of consensus scoring strategies for evaluating computational models of protein-ligand complexes”. Journal of Chemical Information and Modeling 46 (1): 380–91. doi:10.1021/ci050283k. PMID 16426072.
Deng Z, Chuaqui C, Singh J (Jan 2004). “Structural interaction fingerprint (SIFt): a novel method for analyzing three-dimensional protein-ligand binding interactions”. Journal of Medicinal Chemistry 47 (2): 337–44. doi:10.1021/jm030331x. PMID 14711306.
Amari S, Aizawa M, Zhang J, Fukuzawa K, Mochizuki Y, Iwasawa Y, Nakata K, Chuman H, Nakano T (2006). “VISCANA: visualized cluster analysis of protein-ligand interaction based on the ab initio fragment molecular orbital method for virtual ligand screening”. Journal of Chemical Information and Modeling 46 (1): 221–30. doi:10.1021/ci050262q. PMID 16426058.
Mauser H, Guba W (May 2008). “Recent developments in de novo design and scaffold hopping”. Current Opinion in Drug Discovery & Development 11 (3): 365–74. PMID 18428090.
Klebe G (2000). “Recent developments in structure-based drug design”. Journal of Molecular Medicine 78 (5): 269–81. doi:10.1007/s001090000084. PMID 10954199.
Schneider G, Fechner U (Aug 2005). “Computer-based de novo design of drug-like molecules”. Nature Reviews. Drug Discovery 4 (8): 649–63. doi:10.1038/nrd1799. PMID 16056391.
Jorgensen WL (Mar 2004). “The many roles of computation in drug discovery”. Science 303 (5665): 1813–8. Bibcode: 2004Sci...303.1813J. doi:10.1126/science.1096361. PMID 15031495.
Leis S, Schneider S, Zacharias M (2010). “In silico prediction of binding sites on proteins”. Current Medicinal Chemistry 17 (15): 1550–62. doi:10.2174/092986710790979944. PMID 20166931.
Böhm HJ (Jun 1994). “The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure”. Journal of Computer-Aided Molecular Design 8 (3): 243–56. Bibcode: 1994JCAMD...8..243B. doi:10.1007/BF00126743. PMID 7964925.
Liu, Jie; Wang, Renxiao (23 March 2015). “Classification of Current Scoring Functions”. Journal of Chemical Information and Modeling 55 (3): 475–482. doi:10.1021/ci500731a. PMID 25647463.
Ajay, Murcko MA (1995). “Computational methods to predict binding free energy in ligand-receptor complexes”. J. Med. Chem. 38 (26): 4953–67. doi:10.1021/jm00026a001. PMID 8544170.
Greer J, Erickson JW, Baldwin JJ, Varney MD (1994). “Application of the three-dimensional structures of protein target molecules in structure-based drug design”. J. Med. Chem. 37 (8): 1035–1054. doi:10.1021/jm00034a001. PMID 8164249.
Capdeville R, Buchdunger E, Zimmermann J, Matter A (Jul 2002). “Glivec (STI571, imatinib), a rationally developed, targeted anticancer drug”. Nature Reviews. Drug Discovery 1 (7): 493–502. doi:10.1038/nrd839. PMID 12120256.
Klein DF (Mar 2008). “The loss of serendipity in psychopharmacology”. JAMA 299 (9): 1063–5. doi:10.1001/jama.299.9.1063. PMID 18319418.

ncbi.nlm.nih.gov

Dixon SJ, Stockwell BR (Dec 2009). “Identifying druggable disease-modifying gene products”. Current Opinion in Chemical Biology 13 (5–6): 549–55. doi:10.1016/j.cbpa.2009.08.003. PMC 2787993. PMID 19740696.
Ban TA (2006). “The role of serendipity in drug discovery”. Dialogues in Clinical Neuroscience 8 (3): 335–44. PMC 3181823. PMID 17117615.
Liang S, Meroueh SO, Wang G, Qiu C, Zhou Y (May 2009). “Consensus scoring for enriching near-native structures from protein-protein docking decoys”. Proteins 75 (2): 397–403. doi:10.1002/prot.22252. PMC 2656599. PMID 18831053.

pmc.ncbi.nlm.nih.gov

Dixon SJ, Stockwell BR (Dec 2009). “Identifying druggable disease-modifying gene products”. Current Opinion in Chemical Biology 13 (5–6): 549–55. doi:10.1016/j.cbpa.2009.08.003. PMC 2787993. PMID 19740696.
Ban TA (2006). “The role of serendipity in drug discovery”. Dialogues in Clinical Neuroscience 8 (3): 335–44. PMC 3181823. PMID 17117615.
Liang S, Meroueh SO, Wang G, Qiu C, Zhou Y (May 2009). “Consensus scoring for enriching near-native structures from protein-protein docking decoys”. Proteins 75 (2): 397–403. doi:10.1002/prot.22252. PMC 2656599. PMID 18831053.

scripps.edu

autodock.scripps.edu

“AutoDock's role in Developing the First Clinically-Approved HIV Integrase Inhibitor”. Press Release. The Scripps Research Institute (2007年12月17日). 2020年10月12日閲覧。

ssrn.com

Ethiraj, Sendil K.; Levinthal, Daniel (Sep 2004). “Bounded Rationality and the Search for Organizational Architecture: An Evolutionary Perspective on the Design of Organizations and Their Evolvability”. Administrative Science Quarterly (Sage Publications, Inc. on behalf of the Johnson Graduate School of Management, Cornell University) 49 (3): 404–437. JSTOR 4131441. SSRN 604123.

wikipedia.org

en.wikipedia.org

Ethiraj, Sendil K.; Levinthal, Daniel (Sep 2004). “Bounded Rationality and the Search for Organizational Architecture: An Evolutionary Perspective on the Design of Organizations and Their Evolvability”. Administrative Science Quarterly (Sage Publications, Inc. on behalf of the Johnson Graduate School of Management, Cornell University) 49 (3): 404–437. JSTOR 4131441. SSRN 604123.

worldcat.org

search.worldcat.org

Fosgerau, Keld; Hoffmann, Torsten (2015-01-01). “Peptide therapeutics: current status and future directions” (英語). Drug Discovery Today 20 (1): 122–128. doi:10.1016/j.drudis.2014.10.003. ISSN 1359-6446. PMID 25450771.
Ciemny, Maciej; Kurcinski, Mateusz; Kamel, Karol; Kolinski, Andrzej; Alam, Nawsad; Schueler-Furman, Ora; Kmiecik, Sebastian (2018-05-04). “Protein–peptide docking: opportunities and challenges” (英語). Drug Discovery Today 23 (8): 1530–1537. doi:10.1016/j.drudis.2018.05.006. ISSN 1359-6446. PMID 29733895.