微生物叢 (Japanese Wikipedia)
Analysis of information sources in references of the Wikipedia article "微生物叢" in Japanese language version.
refsWebsite
Global rank
Japanese rank
5th place
19th place
234th place
363rd place
857th place
1,005th place
149th place
558th place
4,679th place
3,208th place
low place
low place
2,747th place
2,369th place
low place
8,385th place
305th place
825th place
1,010th place
4,166th place
4,378th place
low place
18th place
107th place
102nd place
78th place
low place
2,155th place
asm.org
msystems.asm.org
- Myer, Phillip R. (2019-06-25). “Bovine Genome-Microbiome Interactions: Metagenomic Frontier for the Selection of Efficient Productivity in Cattle Systems” (英語). mSystems 4 (3). doi:10.1128/mSystems.00103-19. ISSN 2379-5077. PMID 31219789.
- Gilbert, Jack A.; Jansson, Janet K.; Knight, Rob (2018-06-26). “Earth Microbiome Project and Global Systems Biology” (英語). mSystems 3 (3). doi:10.1128/mSystems.00217-17. ISSN 2379-5077.
mmbr.asm.org
- Rowan-Nash, Aislinn D.; Korry, Benjamin J.; Mylonakis, Eleftherios; Belenky, Peter (2019-01-09). “Cross-Domain and Viral Interactions in the Microbiome” (英語). Microbiology and Molecular Biology Reviews 83 (1): e00044-18, /mmbr/83/1/e00044-18.atom. doi:10.1128/MMBR.00044-18. ISSN 1092-2172. PMC 6383444. PMID 30626617.
journals.asm.org
- Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L. et al. (2020-02-25). Graf, Joerg. ed. “Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats” (英語). mBio 11 (1). doi:10.1128/mBio.02901-19. ISSN 2161-2129. PMC 6946802. PMID 31911491.
biomedcentral.com
microbiomejournal.biomedcentral.com
- Marchesi, Julian R.; Ravel, Jacques (2015-12). “The vocabulary of microbiome research: a proposal” (英語). Microbiome 3 (1): 31, s40168-015-0094-5. doi:10.1186/s40168-015-0094-5. ISSN 2049-2618. PMC 4520061. PMID 26229597.
cambridge.org
- Caugant, Dominique A.; Levin, B. R.; Selander, R. K. (1984-06). “Distribution of multilocus genotypes of Escherichia coli within and between host families” (英語). Journal of Hygiene 92 (3): 377-384. doi:10.1017/S0022172400064597. ISSN 0022-1724. PMC 2129322. PMID 6376625.
cell.com
- Moyes, David L.; Naglik, Julian R. (2012-06-14). “The Mycobiome: Influencing IBD Severity” (English). Cell Host & Microbe 11 (6): 551-552. doi:10.1016/j.chom.2012.05.009. ISSN 1931-3128. PMID 22704612.
creativecommons.org
- Hassani, M.A., Durán, P. and Hacquard, S. (2018) "Microbial interactions within the plant holobiont". Microbiome, 6(1): 58. doi:10.1186/s40168-018-0445-0.
Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
doi.org
- Marchesi, Julian R.; Ravel, Jacques (2015-12). “The vocabulary of microbiome research: a proposal” (英語). Microbiome 3 (1): 31, s40168-015-0094-5. doi:10.1186/s40168-015-0094-5. ISSN 2049-2618. PMC 4520061. PMID 26229597.
- Inoue, Ryo (2019-03-14). “ABCs for analysis of gut microbiota”. Japanese Journal of Lactic Acid Bacteria 30 (1): 27-31. doi:10.4109/jslab.30.27. ISSN 1343-327X.
- Kusumoto, Ken-Ichi (2011). “Metagenomic Analysis”. Nippon Shokuhin Kagaku Kogaku Kaishi 58 (3): 136-136. doi:10.3136/nskkk.58.136. ISSN 1341-027X.
- Rowan-Nash, Aislinn D.; Korry, Benjamin J.; Mylonakis, Eleftherios; Belenky, Peter (2019-01-09). “Cross-Domain and Viral Interactions in the Microbiome” (英語). Microbiology and Molecular Biology Reviews 83 (1): e00044-18, /mmbr/83/1/e00044-18.atom. doi:10.1128/MMBR.00044-18. ISSN 1092-2172. PMC 6383444. PMID 30626617.
- Moyes, David L.; Naglik, Julian R. (2012-06-14). “The Mycobiome: Influencing IBD Severity” (English). Cell Host & Microbe 11 (6): 551-552. doi:10.1016/j.chom.2012.05.009. ISSN 1931-3128. PMID 22704612.
- Zhao, Liping (2010-06). “The tale of our other genome” (英語). Nature 465 (7300): 879-880. doi:10.1038/465879a. ISSN 1476-4687.
- Grice, Elizabeth A.; Segre, Julia A. (2012). “The human microbiome: our second genome”. Annual Review of Genomics and Human Genetics 13: 151-170. doi:10.1146/annurev-genom-090711-163814. ISSN 1545-293X. PMC 3518434. PMID 22703178.
- Knight, Rob; Vrbanac, Alison; Taylor, Bryn C.; Aksenov, Alexander; Callewaert, Chris; Debelius, Justine; Gonzalez, Antonio; Kosciolek, Tomasz et al. (07 2018). “Best practices for analysing microbiomes”. Nature Reviews. Microbiology 16 (7): 410-422. doi:10.1038/s41579-018-0029-9. ISSN 1740-1534. PMID 29795328.
- Cui, Lijia; Morris, Alison; Ghedin, Elodie (2013). “The human mycobiome in health and disease”. Genome Medicine 5 (7): 63. doi:10.1186/gm467. ISSN 1756-994X. PMC 3978422. PMID 23899327.
- 緒方靖哉・西山孝・土居克実「改訂 ウイルス分類：話題のウイルスの知見と動向」『化学と生物』第58巻 1号、日本農芸化学会、2020年、20-33頁。
- 小林大介「昆虫類のウイルス叢解析の実際と見出されたウイルスのユニークな進化生態」『蚕糸・昆虫バイオテック』第90巻 1号、日本蚕糸学会、2021年、9-19頁。
- Mohiuddin, Mohammad; Schellhorn, Herb (2015). “Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis” (English). Frontiers in Microbiology 6. doi:10.3389/fmicb.2015.00960. ISSN 1664-302X.
- Kleiner, Manuel; Hooper, Lora V.; Duerkop, Breck A. (2015-01-22). “Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes” (英語). BMC Genomics 16 (1): 7. doi:10.1186/s12864-014-1207-4. ISSN 1471-2164. PMC 4308010. PMID 25608871.
- Haynes, Matthew; Rohwer, Forest (2011). “The Human Virome”. In Nelson, Karen E. (英語). Metagenomics of the Human Body. New York, NY: Springer. pp. 63-77. doi:10.1007/978-1-4419-7089-3_4. ISBN 978-1-4419-7089-3. PMC 7122492
- Wylie, Kristine M.; Weinstock, George M.; Storch, Gregory A. (2012-10-01). “Emerging view of the human virome” (英語). Translational Research 160 (4): 283-290. doi:10.1016/j.trsl.2012.03.006. ISSN 1931-5244.
- Breitbart, Mya; Salamon, Peter; Andresen, Bjarne; Mahaffy, Joseph M.; Segall, Anca M.; Mead, David; Azam, Farooq; Rohwer, Forest (2002-10-29). “Genomic analysis of uncultured marine viral communities”. Proceedings of the National Academy of Sciences of the United States of America 99 (22): 14250-14255. doi:10.1073/pnas.202488399. ISSN 0027-8424. PMC 137870. PMID 12384570.
- Byrd, Allyson L.; Belkaid, Yasmine; Segre, Julia A. (2018-03). “The human skin microbiome” (英語). Nature Reviews Microbiology 16 (3): 143-155. doi:10.1038/nrmicro.2017.157. ISSN 1740-1526.
- Sender, Ron; Fuchs, Shai; Milo, Ron (2016-08-19). “Revised Estimates for the Number of Human and Bacteria Cells in the Body” (英語). PLOS Biology 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. ISSN 1545-7885. PMC 4991899. PMID 27541692.
- NIH HMP Working Group; Peterson, Jane; Garges, Susan; Giovanni, Maria; McInnes, Pamela; Wang, Lu; Schloss, Jeffery A.; Bonazzi, Vivien et al. (2009-12). “The NIH Human Microbiome Project”. Genome Research 19 (12): 2317-2323. doi:10.1101/gr.096651.109. ISSN 1549-5469. PMC 2792171. PMID 19819907.
- Qin, Junjie; Li, Ruiqiang; Raes, Jeroen; Arumugam, Manimozhiyan; Burgdorf, Kristoffer Solvsten; Manichanh, Chaysavanh; Nielsen, Trine; Pons, Nicolas et al. (2010-03). “A human gut microbial gene catalogue established by metagenomic sequencing” (英語). Nature 464 (7285): 59-65. doi:10.1038/nature08821. ISSN 1476-4687.
- Costello, Elizabeth K.; Lauber, Christian L.; Hamady, Micah; Fierer, Noah; Gordon, Jeffrey I.; Knight, Rob (2009-12-18). “Bacterial Community Variation in Human Body Habitats Across Space and Time” (英語). Science 326 (5960): 1694-1697. doi:10.1126/science.1177486. ISSN 0036-8075. PMID 19892944.
- The Human Microbiome Project Consortium (2012-06). “Structure, function and diversity of the healthy human microbiome” (英語). Nature 486 (7402): 207-214. doi:10.1038/nature11234. ISSN 0028-0836. PMC 3564958. PMID 22699609.
- Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L. et al. (2020-02-25). Graf, Joerg. ed. “Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats” (英語). mBio 11 (1). doi:10.1128/mBio.02901-19. ISSN 2161-2129. PMC 6946802. PMID 31911491.
- Ezenwa, V. O.; Gerardo, N. M.; Inouye, D. W.; Medina, M.; Xavier, J. B. (2012-10-12). “Animal Behavior and the Microbiome” (英語). Science 338 (6104): 198-199. doi:10.1126/science.1227412. ISSN 0036-8075.
- Hammer, Tobin J.; Sanders, Jon G.; Fierer, Noah (2019-05-01). “Not all animals need a microbiome” (英語). FEMS Microbiology Letters 366 (10). doi:10.1093/femsle/fnz117. ISSN 0378-1097.
- Caugant, Dominique A.; Levin, B. R.; Selander, R. K. (1984-06). “Distribution of multilocus genotypes of Escherichia coli within and between host families” (英語). Journal of Hygiene 92 (3): 377-384. doi:10.1017/S0022172400064597. ISSN 0022-1724. PMC 2129322. PMID 6376625.
- Song, Se Jin; Lauber, Christian; Costello, Elizabeth K; Lozupone, Catherine A; Humphrey, Gregory; Berg-Lyons, Donna; Caporaso, J Gregory; Knights, Dan et al. (2013-04-16). Weigel, Detlef. ed. “Cohabiting family members share microbiota with one another and with their dogs”. eLife 2: e00458. doi:10.7554/eLife.00458. ISSN 2050-084X.
- Ley, R. E.; Hamady, M.; Lozupone, C.; Turnbaugh, P. J.; Ramey, R. R.; Bircher, J. S.; Schlegel, M. L.; Tucker, T. A. et al. (2008-06-20). “Evolution of Mammals and Their Gut Microbes” (英語). Science 320 (5883): 1647-1651. doi:10.1126/science.1155725. ISSN 0036-8075. PMC 2649005. PMID 18497261.
- Muegge, Brian D.; Kuczynski, Justin; Knights, Dan; Clemente, Jose C.; González, Antonio; Fontana, Luigi; Henrissat, Bernard; Knight, Rob et al. (2011-05-20). “Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans”. Science (New York, N.Y.) 332 (6032): 970-974. doi:10.1126/science.1198719. ISSN 1095-9203. PMC 3303602. PMID 21596990.
- Karasov, William H.; Douglas, Angela E. (2013-4). “Comparative Digestive Physiology”. Comprehensive Physiology 3 (2): 741-783. doi:10.1002/cphy.c110054. ISSN 2040-4603. PMC 4458075. PMID 23720328.
- Myer, Phillip R. (2019-06-25). “Bovine Genome-Microbiome Interactions: Metagenomic Frontier for the Selection of Efficient Productivity in Cattle Systems” (英語). mSystems 4 (3). doi:10.1128/mSystems.00103-19. ISSN 2379-5077. PMID 31219789.
- Hassani, M.A., Durán, P. and Hacquard, S. (2018) "Microbial interactions within the plant holobiont". Microbiome, 6(1): 58. doi:10.1186/s40168-018-0445-0. Material was copied from this source, which is available under a Creative Commons Attribution 4.0 International License.
- Berlec, Aleš (2012-09-01). “Novel techniques and findings in the study of plant microbiota: Search for plant probiotics”. Plant Science 193-194: 96-102. doi:10.1016/j.plantsci.2012.05.010. PMID 22794922.
- Whipps, J.m.; Hand, P.; Pink, D.; Bending, G.d. (2008-12-01). “Phyllosphere microbiology with special reference to diversity and plant genotype” (英語). Journal of Applied Microbiology 105 (6): 1744-1755. doi:10.1111/j.1365-2672.2008.03906.x. ISSN 1365-2672. PMID 19120625.
- “Four hundred-million-year-old vesicular arbuscular mycorrhizae”. Proc. Natl. Acad. Sci. USA 91 (25): 11841-3. (1994). Bibcode: 1994PNAS...9111841R. doi:10.1073/pnas.91.25.11841. PMC 45331. PMID 11607500.
- “Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology”. BMC Microbiology 9(Suppl 1): S6. (2009). doi:10.1186/1471-2180-9-S1-S6. PMC 2654666. PMID 19278554.
- Bloemberg, G. V.; Lugtenberg, B. J. J. (2001). “Molecular basis of plant growth promotion and biocontrol by rhizobacteria”. Current Opinion in Plant Biology 4 (4): 343-350. doi:10.1016/S1369-5266(00)00183-7. PMID 11418345.
- “Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects”. Appl Environ Microbiol 71 (9): 4951-9. (2005). doi:10.1128/AEM.71.9.4951-4959.2005. PMC 1214602. PMID 16151072.
- 百町満朗「生物防除研究の現状と展望」『日本植物病理學會報』第79巻第3号、日本植物病理學會、2013年8月、123-127頁、doi:10.3186/jjphytopath.79.123、ISSN 00319473、NAID 10031191400。
- Bar-On, Yinon M.; Phillips, Rob; Milo, Ron (2018-05-21). “The biomass distribution on Earth” (英語). Proceedings of the National Academy of Sciences 115 (25): 6506-6511. doi:10.1073/pnas.1711842115. ISSN 0027-8424.
- Blasiak, R.; Wynberg, R.; Grorud-Colvert, K.; Thambisetty, S.; Bandarra, N. M.; Canário, A. V. M.; da Silva, J.; Duarte, C. M. et al. (2020-08). “The ocean genome and future prospects for conservation and equity” (英語). Nature Sustainability 3 (8): 588-596. doi:10.1038/s41893-020-0522-9. ISSN 2398-9629.
- Gilbert, Jack A.; Jansson, Janet K.; Knight, Rob (2014-08-22). “The Earth Microbiome project: successes and aspirations”. BMC Biology 12 (1): 69. doi:10.1186/s12915-014-0069-1. ISSN 1741-7007.
- Gilbert, Jack A.; Jansson, Janet K.; Knight, Rob (2018-06-26). “Earth Microbiome Project and Global Systems Biology” (英語). mSystems 3 (3). doi:10.1128/mSystems.00217-17. ISSN 2379-5077.
- Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Ladau, Joshua; Locey, Kenneth J.; Prill, Robert J.; Tripathi, Anupriya et al. (2017-11). “A communal catalogue reveals Earth’s multiscale microbial diversity” (英語). Nature 551 (7681): 457-463. doi:10.1038/nature24621. ISSN 1476-4687.
- Caporaso, J Gregory; Kuczynski, Justin; Stombaugh, Jesse; Bittinger, Kyle; Bushman, Frederic D; Costello, Elizabeth K; Fierer, Noah; Peña, Antonio Gonzalez et al. (2010-05). “QIIME allows analysis of high-throughput community sequencing data” (英語). Nature Methods 7 (5): 335-336. doi:10.1038/nmeth.f.303. ISSN 1548-7091.
- Fierer, Noah (2017-10). “Embracing the unknown: disentangling the complexities of the soil microbiome” (英語). Nature Reviews Microbiology 15 (10): 579-590. doi:10.1038/nrmicro.2017.87. ISSN 1740-1526.
- Whitman, William B.; Coleman, David C.; Wiebe, William J. (1998-06-09). “Prokaryotes: The unseen majority” (英語). Proceedings of the National Academy of Sciences 95 (12): 6578-6583. doi:10.1073/pnas.95.12.6578. ISSN 0027-8424. PMID 9618454.
- 山本純之、磯﨑行雄「ストロマトライト研究の歴史と今後の展望」『地學雜誌』第122巻第5号、東京地学協会、2013年、791-806頁、doi:10.5026/jgeography.122.791、ISSN 0022-135X、NAID 130003385928。
- NAGANUMA, Takeshi (2004). “Deep Subsurface Biosphere: a New Look of Geo-Biological Resources”. Shigen-to-Sozai 120 (1): 1-9. doi:10.2473/shigentosozai.120.1. ISSN 0916-1740.
- Ijiri, Akira (2020-01-15). “Significance of biogeochemical processes in mud volcanoes”. The Journal of the Geological Society of Japan 126 (1): 29-37. doi:10.5575/geosoc.2019.0044. ISSN 0016-7630.
- Gilbert, Jack A.; Stephens, Brent (2018-11). “Microbiology of the built environment” (英語). Nature Reviews Microbiology 16 (11): 661-670. doi:10.1038/s41579-018-0065-5. ISSN 1740-1526.
- Afshinnekoo, Ebrahim; Meydan, Cem; Chowdhury, Shanin; Jaroudi, Dyala; Boyer, Collin; Bernstein, Nick; Maritz, Julia M.; Reeves, Darryl et al. (2015-07-29). “Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics” (英語). Cell Systems 1 (1): 72-87. doi:10.1016/j.cels.2015.01.001. ISSN 2405-4712.
- Filippis, Francesca De; Parente, Eugenio; Ercolini, Danilo (2017). “Metagenomics insights into food fermentations” (英語). Microbial Biotechnology 10 (1): 91-102. doi:10.1111/1751-7915.12421. ISSN 1751-7915. PMC 5270737. PMID 27709807.
- Cao, Yu; Fanning, Séamus; Proos, Sinéad; Jordan, Kieran; Srikumar, Shabarinath (2017-09-21). “A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies”. Frontiers in Microbiology 8: 1829. doi:10.3389/fmicb.2017.01829. ISSN 1664-302X. PMC 5627019. PMID 29033905.
- SAKUDA, SHOHEI (2002). Kagaku To Seibutsu 40 (9): 600-605. doi:10.1271/kagakutoseibutsu1962.40.600. ISSN 0453-073X. https://doi.org/10.1271/kagakutoseibutsu1962.40.600.
- Woese, Carl R.; Fox, George E. (1977-11-01). “Phylogenetic structure of the prokaryotic domain: The primary kingdoms” (英語). Proceedings of the National Academy of Sciences 74 (11): 5088-5090. doi:10.1073/pnas.74.11.5088. ISSN 0027-8424. PMC 432104. PMID 270744.
- Giovannoni, Stephen J.; Britschgi, Theresa B.; Moyer, Craig L.; Field, Katharine G. (1990-05). “Genetic diversity in Sargasso Sea bacterioplankton” (英語). Nature 345 (6270): 60-63. doi:10.1038/345060a0. ISSN 0028-0836.
- YAMADA, Takuji (2013). “Human Gut Metagenomic Analysis toward Clinical Studies”. KAGAKU TO SEIBUTSU 51 (12): 802-808. doi:10.1271/kagakutoseibutsu.51.802. ISSN 0453-073X.
- Gill, S. R.; Pop, M.; DeBoy, R. T.; Eckburg, P. B.; Turnbaugh, P. J.; Samuel, B. S.; Gordon, J. I.; Relman, D. A. et al. (2006-06-02). “Metagenomic Analysis of the Human Distal Gut Microbiome” (英語). Science 312 (5778): 1355-1359. doi:10.1126/science.1124234. ISSN 0036-8075. PMC 3027896. PMID 16741115.
- Zhernakova, Alexandra; Kurilshikov, Alexander; Bonder, Marc Jan; Tigchelaar, Ettje F.; Schirmer, Melanie; Vatanen, Tommi; Mujagic, Zlatan; Vila, Arnau Vich et al. (2016-04-29). “Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity” (英語). Science 352 (6285): 565-569. doi:10.1126/science.aad3369. ISSN 0036-8075. PMC 5240844. PMID 27126040.
- Frank, J. A.; Pan, Y.; Tooming-Klunderud, A.; Eijsink, V. G. H.; McHardy, A. C.; Nederbragt, A. J.; Pope, P. B. (2016-05-09). “Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data” (英語). Scientific Reports 6 (1): 25373. doi:10.1038/srep25373. ISSN 2045-2322.
- Tsai, Yu-Chih; Conlan, Sean; Deming, Clayton; NISC Comparative Sequencing Program; Segre, Julia A.; Kong, Heidi H.; Korlach, Jonas; Oh, Julia (2016-02-09). “Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing”. mBio 7 (1): e01948–01915. doi:10.1128/mBio.01948-15. ISSN 2150-7511. PMC 4752602. PMID 26861018.
- Liu, Yong-Xin; Qin, Yuan; Chen, Tong; Lu, Meiping; Qian, Xubo; Guo, Xiaoxuan; Bai, Yang (2021-05-01). “A practical guide to amplicon and metagenomic analysis of microbiome data” (英語). Protein & Cell 12 (5): 315–330. doi:10.1007/s13238-020-00724-8. ISSN 1674-8018.
eiken.co.jp
- 平山 和宏 (2014). “シリーズ 腸内細菌叢 1 腸内細菌叢の基礎”. モダンメディア 60.
frontiersin.org
frontiersin.org
- Mohiuddin, Mohammad; Schellhorn, Herb (2015). “Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis” (English). Frontiers in Microbiology 6. doi:10.3389/fmicb.2015.00960. ISSN 1664-302X.
journal.frontiersin.org
- Cao, Yu; Fanning, Séamus; Proos, Sinéad; Jordan, Kieran; Srikumar, Shabarinath (2017-09-21). “A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies”. Frontiers in Microbiology 8: 1829. doi:10.3389/fmicb.2017.01829. ISSN 1664-302X. PMC 5627019. PMID 29033905.
handle.net
hdl.handle.net
- 百町満朗「生物防除研究の現状と展望」『日本植物病理學會報』第79巻第3号、日本植物病理學會、2013年8月、123-127頁、doi:10.3186/jjphytopath.79.123、ISSN 00319473、NAID 10031191400。
harvard.edu
ui.adsabs.harvard.edu
- “Four hundred-million-year-old vesicular arbuscular mycorrhizae”. Proc. Natl. Acad. Sci. USA 91 (25): 11841-3. (1994). Bibcode: 1994PNAS...9111841R. doi:10.1073/pnas.91.25.11841. PMC 45331. PMID 11607500.
nature.com
- Zhao, Liping (2010-06). “The tale of our other genome” (英語). Nature 465 (7300): 879-880. doi:10.1038/465879a. ISSN 1476-4687.
- Byrd, Allyson L.; Belkaid, Yasmine; Segre, Julia A. (2018-03). “The human skin microbiome” (英語). Nature Reviews Microbiology 16 (3): 143-155. doi:10.1038/nrmicro.2017.157. ISSN 1740-1526.
- Qin, Junjie; Li, Ruiqiang; Raes, Jeroen; Arumugam, Manimozhiyan; Burgdorf, Kristoffer Solvsten; Manichanh, Chaysavanh; Nielsen, Trine; Pons, Nicolas et al. (2010-03). “A human gut microbial gene catalogue established by metagenomic sequencing” (英語). Nature 464 (7285): 59-65. doi:10.1038/nature08821. ISSN 1476-4687.
- The Human Microbiome Project Consortium (2012-06). “Structure, function and diversity of the healthy human microbiome” (英語). Nature 486 (7402): 207-214. doi:10.1038/nature11234. ISSN 0028-0836. PMC 3564958. PMID 22699609.
- Blasiak, R.; Wynberg, R.; Grorud-Colvert, K.; Thambisetty, S.; Bandarra, N. M.; Canário, A. V. M.; da Silva, J.; Duarte, C. M. et al. (2020-08). “The ocean genome and future prospects for conservation and equity” (英語). Nature Sustainability 3 (8): 588-596. doi:10.1038/s41893-020-0522-9. ISSN 2398-9629.
- Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Ladau, Joshua; Locey, Kenneth J.; Prill, Robert J.; Tripathi, Anupriya et al. (2017-11). “A communal catalogue reveals Earth’s multiscale microbial diversity” (英語). Nature 551 (7681): 457-463. doi:10.1038/nature24621. ISSN 1476-4687.
- Caporaso, J Gregory; Kuczynski, Justin; Stombaugh, Jesse; Bittinger, Kyle; Bushman, Frederic D; Costello, Elizabeth K; Fierer, Noah; Peña, Antonio Gonzalez et al. (2010-05). “QIIME allows analysis of high-throughput community sequencing data” (英語). Nature Methods 7 (5): 335-336. doi:10.1038/nmeth.f.303. ISSN 1548-7091.
- Fierer, Noah (2017-10). “Embracing the unknown: disentangling the complexities of the soil microbiome” (英語). Nature Reviews Microbiology 15 (10): 579-590. doi:10.1038/nrmicro.2017.87. ISSN 1740-1526.
- 伊津野, 郡平「ハメリンプール湾における現生ストロマトライトの形態形成について」『地質ニュース1995年8月号』第492巻、1995年8月、41-54頁。
- Gilbert, Jack A.; Stephens, Brent (2018-11). “Microbiology of the built environment” (英語). Nature Reviews Microbiology 16 (11): 661-670. doi:10.1038/s41579-018-0065-5. ISSN 1740-1526.
- Giovannoni, Stephen J.; Britschgi, Theresa B.; Moyer, Craig L.; Field, Katharine G. (1990-05). “Genetic diversity in Sargasso Sea bacterioplankton” (英語). Nature 345 (6270): 60-63. doi:10.1038/345060a0. ISSN 0028-0836.
- Frank, J. A.; Pan, Y.; Tooming-Klunderud, A.; Eijsink, V. G. H.; McHardy, A. C.; Nederbragt, A. J.; Pope, P. B. (2016-05-09). “Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data” (英語). Scientific Reports 6 (1): 25373. doi:10.1038/srep25373. ISSN 2045-2322.
nih.gov
pubmed.ncbi.nlm.nih.gov
- Marchesi, Julian R.; Ravel, Jacques (2015-12). “The vocabulary of microbiome research: a proposal” (英語). Microbiome 3 (1): 31, s40168-015-0094-5. doi:10.1186/s40168-015-0094-5. ISSN 2049-2618. PMC 4520061. PMID 26229597.
- Rowan-Nash, Aislinn D.; Korry, Benjamin J.; Mylonakis, Eleftherios; Belenky, Peter (2019-01-09). “Cross-Domain and Viral Interactions in the Microbiome” (英語). Microbiology and Molecular Biology Reviews 83 (1): e00044-18, /mmbr/83/1/e00044-18.atom. doi:10.1128/MMBR.00044-18. ISSN 1092-2172. PMC 6383444. PMID 30626617.
- Moyes, David L.; Naglik, Julian R. (2012-06-14). “The Mycobiome: Influencing IBD Severity” (English). Cell Host & Microbe 11 (6): 551-552. doi:10.1016/j.chom.2012.05.009. ISSN 1931-3128. PMID 22704612.
- Grice, Elizabeth A.; Segre, Julia A. (2012). “The human microbiome: our second genome”. Annual Review of Genomics and Human Genetics 13: 151-170. doi:10.1146/annurev-genom-090711-163814. ISSN 1545-293X. PMC 3518434. PMID 22703178.
- Knight, Rob; Vrbanac, Alison; Taylor, Bryn C.; Aksenov, Alexander; Callewaert, Chris; Debelius, Justine; Gonzalez, Antonio; Kosciolek, Tomasz et al. (07 2018). “Best practices for analysing microbiomes”. Nature Reviews. Microbiology 16 (7): 410-422. doi:10.1038/s41579-018-0029-9. ISSN 1740-1534. PMID 29795328.
- Cui, Lijia; Morris, Alison; Ghedin, Elodie (2013). “The human mycobiome in health and disease”. Genome Medicine 5 (7): 63. doi:10.1186/gm467. ISSN 1756-994X. PMC 3978422. PMID 23899327.
- Kleiner, Manuel; Hooper, Lora V.; Duerkop, Breck A. (2015-01-22). “Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes” (英語). BMC Genomics 16 (1): 7. doi:10.1186/s12864-014-1207-4. ISSN 1471-2164. PMC 4308010. PMID 25608871.
- Breitbart, Mya; Salamon, Peter; Andresen, Bjarne; Mahaffy, Joseph M.; Segall, Anca M.; Mead, David; Azam, Farooq; Rohwer, Forest (2002-10-29). “Genomic analysis of uncultured marine viral communities”. Proceedings of the National Academy of Sciences of the United States of America 99 (22): 14250-14255. doi:10.1073/pnas.202488399. ISSN 0027-8424. PMC 137870. PMID 12384570.
- Sender, Ron; Fuchs, Shai; Milo, Ron (2016-08-19). “Revised Estimates for the Number of Human and Bacteria Cells in the Body” (英語). PLOS Biology 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. ISSN 1545-7885. PMC 4991899. PMID 27541692.
- NIH HMP Working Group; Peterson, Jane; Garges, Susan; Giovanni, Maria; McInnes, Pamela; Wang, Lu; Schloss, Jeffery A.; Bonazzi, Vivien et al. (2009-12). “The NIH Human Microbiome Project”. Genome Research 19 (12): 2317-2323. doi:10.1101/gr.096651.109. ISSN 1549-5469. PMC 2792171. PMID 19819907.
- Costello, Elizabeth K.; Lauber, Christian L.; Hamady, Micah; Fierer, Noah; Gordon, Jeffrey I.; Knight, Rob (2009-12-18). “Bacterial Community Variation in Human Body Habitats Across Space and Time” (英語). Science 326 (5960): 1694-1697. doi:10.1126/science.1177486. ISSN 0036-8075. PMID 19892944.
- The Human Microbiome Project Consortium (2012-06). “Structure, function and diversity of the healthy human microbiome” (英語). Nature 486 (7402): 207-214. doi:10.1038/nature11234. ISSN 0028-0836. PMC 3564958. PMID 22699609.
- Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L. et al. (2020-02-25). Graf, Joerg. ed. “Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats” (英語). mBio 11 (1). doi:10.1128/mBio.02901-19. ISSN 2161-2129. PMC 6946802. PMID 31911491.
- Caugant, Dominique A.; Levin, B. R.; Selander, R. K. (1984-06). “Distribution of multilocus genotypes of Escherichia coli within and between host families” (英語). Journal of Hygiene 92 (3): 377-384. doi:10.1017/S0022172400064597. ISSN 0022-1724. PMC 2129322. PMID 6376625.
- Ley, R. E.; Hamady, M.; Lozupone, C.; Turnbaugh, P. J.; Ramey, R. R.; Bircher, J. S.; Schlegel, M. L.; Tucker, T. A. et al. (2008-06-20). “Evolution of Mammals and Their Gut Microbes” (英語). Science 320 (5883): 1647-1651. doi:10.1126/science.1155725. ISSN 0036-8075. PMC 2649005. PMID 18497261.
- Muegge, Brian D.; Kuczynski, Justin; Knights, Dan; Clemente, Jose C.; González, Antonio; Fontana, Luigi; Henrissat, Bernard; Knight, Rob et al. (2011-05-20). “Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans”. Science (New York, N.Y.) 332 (6032): 970-974. doi:10.1126/science.1198719. ISSN 1095-9203. PMC 3303602. PMID 21596990.
- Karasov, William H.; Douglas, Angela E. (2013-4). “Comparative Digestive Physiology”. Comprehensive Physiology 3 (2): 741-783. doi:10.1002/cphy.c110054. ISSN 2040-4603. PMC 4458075. PMID 23720328.
- Myer, Phillip R. (2019-06-25). “Bovine Genome-Microbiome Interactions: Metagenomic Frontier for the Selection of Efficient Productivity in Cattle Systems” (英語). mSystems 4 (3). doi:10.1128/mSystems.00103-19. ISSN 2379-5077. PMID 31219789.
- Berlec, Aleš (2012-09-01). “Novel techniques and findings in the study of plant microbiota: Search for plant probiotics”. Plant Science 193-194: 96-102. doi:10.1016/j.plantsci.2012.05.010. PMID 22794922.
- Whipps, J.m.; Hand, P.; Pink, D.; Bending, G.d. (2008-12-01). “Phyllosphere microbiology with special reference to diversity and plant genotype” (英語). Journal of Applied Microbiology 105 (6): 1744-1755. doi:10.1111/j.1365-2672.2008.03906.x. ISSN 1365-2672. PMID 19120625.
- “Four hundred-million-year-old vesicular arbuscular mycorrhizae”. Proc. Natl. Acad. Sci. USA 91 (25): 11841-3. (1994). Bibcode: 1994PNAS...9111841R. doi:10.1073/pnas.91.25.11841. PMC 45331. PMID 11607500.
- “Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology”. BMC Microbiology 9(Suppl 1): S6. (2009). doi:10.1186/1471-2180-9-S1-S6. PMC 2654666. PMID 19278554.
- Bloemberg, G. V.; Lugtenberg, B. J. J. (2001). “Molecular basis of plant growth promotion and biocontrol by rhizobacteria”. Current Opinion in Plant Biology 4 (4): 343-350. doi:10.1016/S1369-5266(00)00183-7. PMID 11418345.
- “Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects”. Appl Environ Microbiol 71 (9): 4951-9. (2005). doi:10.1128/AEM.71.9.4951-4959.2005. PMC 1214602. PMID 16151072.
- Whitman, William B.; Coleman, David C.; Wiebe, William J. (1998-06-09). “Prokaryotes: The unseen majority” (英語). Proceedings of the National Academy of Sciences 95 (12): 6578-6583. doi:10.1073/pnas.95.12.6578. ISSN 0027-8424. PMID 9618454.
- Filippis, Francesca De; Parente, Eugenio; Ercolini, Danilo (2017). “Metagenomics insights into food fermentations” (英語). Microbial Biotechnology 10 (1): 91-102. doi:10.1111/1751-7915.12421. ISSN 1751-7915. PMC 5270737. PMID 27709807.
- Cao, Yu; Fanning, Séamus; Proos, Sinéad; Jordan, Kieran; Srikumar, Shabarinath (2017-09-21). “A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies”. Frontiers in Microbiology 8: 1829. doi:10.3389/fmicb.2017.01829. ISSN 1664-302X. PMC 5627019. PMID 29033905.
- Amann, R I; Ludwig, W; Schleifer, K H (1995-03). “Phylogenetic identification and in situ detection of individual microbial cells without cultivation.”. Microbiological Reviews 59 (1): 143-169. ISSN 0146-0749. PMC 239358. PMID 7535888.
- Woese, Carl R.; Fox, George E. (1977-11-01). “Phylogenetic structure of the prokaryotic domain: The primary kingdoms” (英語). Proceedings of the National Academy of Sciences 74 (11): 5088-5090. doi:10.1073/pnas.74.11.5088. ISSN 0027-8424. PMC 432104. PMID 270744.
- Gill, S. R.; Pop, M.; DeBoy, R. T.; Eckburg, P. B.; Turnbaugh, P. J.; Samuel, B. S.; Gordon, J. I.; Relman, D. A. et al. (2006-06-02). “Metagenomic Analysis of the Human Distal Gut Microbiome” (英語). Science 312 (5778): 1355-1359. doi:10.1126/science.1124234. ISSN 0036-8075. PMC 3027896. PMID 16741115.
- Zhernakova, Alexandra; Kurilshikov, Alexander; Bonder, Marc Jan; Tigchelaar, Ettje F.; Schirmer, Melanie; Vatanen, Tommi; Mujagic, Zlatan; Vila, Arnau Vich et al. (2016-04-29). “Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity” (英語). Science 352 (6285): 565-569. doi:10.1126/science.aad3369. ISSN 0036-8075. PMC 5240844. PMID 27126040.
- Tsai, Yu-Chih; Conlan, Sean; Deming, Clayton; NISC Comparative Sequencing Program; Segre, Julia A.; Kong, Heidi H.; Korlach, Jonas; Oh, Julia (2016-02-09). “Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing”. mBio 7 (1): e01948–01915. doi:10.1128/mBio.01948-15. ISSN 2150-7511. PMC 4752602. PMID 26861018.
ncbi.nlm.nih.gov
- Marchesi, Julian R.; Ravel, Jacques (2015-12). “The vocabulary of microbiome research: a proposal” (英語). Microbiome 3 (1): 31, s40168-015-0094-5. doi:10.1186/s40168-015-0094-5. ISSN 2049-2618. PMC 4520061. PMID 26229597.
- Rowan-Nash, Aislinn D.; Korry, Benjamin J.; Mylonakis, Eleftherios; Belenky, Peter (2019-01-09). “Cross-Domain and Viral Interactions in the Microbiome” (英語). Microbiology and Molecular Biology Reviews 83 (1): e00044-18, /mmbr/83/1/e00044-18.atom. doi:10.1128/MMBR.00044-18. ISSN 1092-2172. PMC 6383444. PMID 30626617.
- Grice, Elizabeth A.; Segre, Julia A. (2012). “The human microbiome: our second genome”. Annual Review of Genomics and Human Genetics 13: 151-170. doi:10.1146/annurev-genom-090711-163814. ISSN 1545-293X. PMC 3518434. PMID 22703178.
- Knight, Rob; Vrbanac, Alison; Taylor, Bryn C.; Aksenov, Alexander; Callewaert, Chris; Debelius, Justine; Gonzalez, Antonio; Kosciolek, Tomasz et al. (07 2018). “Best practices for analysing microbiomes”. Nature Reviews. Microbiology 16 (7): 410-422. doi:10.1038/s41579-018-0029-9. ISSN 1740-1534. PMID 29795328.
- Cui, Lijia; Morris, Alison; Ghedin, Elodie (2013). “The human mycobiome in health and disease”. Genome Medicine 5 (7): 63. doi:10.1186/gm467. ISSN 1756-994X. PMC 3978422. PMID 23899327.
- Kleiner, Manuel; Hooper, Lora V.; Duerkop, Breck A. (2015-01-22). “Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes” (英語). BMC Genomics 16 (1): 7. doi:10.1186/s12864-014-1207-4. ISSN 1471-2164. PMC 4308010. PMID 25608871.
- Haynes, Matthew; Rohwer, Forest (2011). “The Human Virome”. In Nelson, Karen E. (英語). Metagenomics of the Human Body. New York, NY: Springer. pp. 63-77. doi:10.1007/978-1-4419-7089-3_4. ISBN 978-1-4419-7089-3. PMC 7122492
- Breitbart, Mya; Salamon, Peter; Andresen, Bjarne; Mahaffy, Joseph M.; Segall, Anca M.; Mead, David; Azam, Farooq; Rohwer, Forest (2002-10-29). “Genomic analysis of uncultured marine viral communities”. Proceedings of the National Academy of Sciences of the United States of America 99 (22): 14250-14255. doi:10.1073/pnas.202488399. ISSN 0027-8424. PMC 137870. PMID 12384570.
- Sender, Ron; Fuchs, Shai; Milo, Ron (2016-08-19). “Revised Estimates for the Number of Human and Bacteria Cells in the Body” (英語). PLOS Biology 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. ISSN 1545-7885. PMC 4991899. PMID 27541692.
- NIH HMP Working Group; Peterson, Jane; Garges, Susan; Giovanni, Maria; McInnes, Pamela; Wang, Lu; Schloss, Jeffery A.; Bonazzi, Vivien et al. (2009-12). “The NIH Human Microbiome Project”. Genome Research 19 (12): 2317-2323. doi:10.1101/gr.096651.109. ISSN 1549-5469. PMC 2792171. PMID 19819907.
- The Human Microbiome Project Consortium (2012-06). “Structure, function and diversity of the healthy human microbiome” (英語). Nature 486 (7402): 207-214. doi:10.1038/nature11234. ISSN 0028-0836. PMC 3564958. PMID 22699609.
- Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L. et al. (2020-02-25). Graf, Joerg. ed. “Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats” (英語). mBio 11 (1). doi:10.1128/mBio.02901-19. ISSN 2161-2129. PMC 6946802. PMID 31911491.
- Caugant, Dominique A.; Levin, B. R.; Selander, R. K. (1984-06). “Distribution of multilocus genotypes of Escherichia coli within and between host families” (英語). Journal of Hygiene 92 (3): 377-384. doi:10.1017/S0022172400064597. ISSN 0022-1724. PMC 2129322. PMID 6376625.
- Ley, R. E.; Hamady, M.; Lozupone, C.; Turnbaugh, P. J.; Ramey, R. R.; Bircher, J. S.; Schlegel, M. L.; Tucker, T. A. et al. (2008-06-20). “Evolution of Mammals and Their Gut Microbes” (英語). Science 320 (5883): 1647-1651. doi:10.1126/science.1155725. ISSN 0036-8075. PMC 2649005. PMID 18497261.
- Muegge, Brian D.; Kuczynski, Justin; Knights, Dan; Clemente, Jose C.; González, Antonio; Fontana, Luigi; Henrissat, Bernard; Knight, Rob et al. (2011-05-20). “Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans”. Science (New York, N.Y.) 332 (6032): 970-974. doi:10.1126/science.1198719. ISSN 1095-9203. PMC 3303602. PMID 21596990.
- Karasov, William H.; Douglas, Angela E. (2013-4). “Comparative Digestive Physiology”. Comprehensive Physiology 3 (2): 741-783. doi:10.1002/cphy.c110054. ISSN 2040-4603. PMC 4458075. PMID 23720328.
- “Four hundred-million-year-old vesicular arbuscular mycorrhizae”. Proc. Natl. Acad. Sci. USA 91 (25): 11841-3. (1994). Bibcode: 1994PNAS...9111841R. doi:10.1073/pnas.91.25.11841. PMC 45331. PMID 11607500.
- “Common themes in nutrient acquisition by plant symbiotic microbes, described by the Gene Ontology”. BMC Microbiology 9(Suppl 1): S6. (2009). doi:10.1186/1471-2180-9-S1-S6. PMC 2654666. PMID 19278554.
- “Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects”. Appl Environ Microbiol 71 (9): 4951-9. (2005). doi:10.1128/AEM.71.9.4951-4959.2005. PMC 1214602. PMID 16151072.
- Filippis, Francesca De; Parente, Eugenio; Ercolini, Danilo (2017). “Metagenomics insights into food fermentations” (英語). Microbial Biotechnology 10 (1): 91-102. doi:10.1111/1751-7915.12421. ISSN 1751-7915. PMC 5270737. PMID 27709807.
- Cao, Yu; Fanning, Séamus; Proos, Sinéad; Jordan, Kieran; Srikumar, Shabarinath (2017-09-21). “A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies”. Frontiers in Microbiology 8: 1829. doi:10.3389/fmicb.2017.01829. ISSN 1664-302X. PMC 5627019. PMID 29033905.
- Amann, R I; Ludwig, W; Schleifer, K H (1995-03). “Phylogenetic identification and in situ detection of individual microbial cells without cultivation.”. Microbiological Reviews 59 (1): 143-169. ISSN 0146-0749. PMC 239358. PMID 7535888.
- Woese, Carl R.; Fox, George E. (1977-11-01). “Phylogenetic structure of the prokaryotic domain: The primary kingdoms” (英語). Proceedings of the National Academy of Sciences 74 (11): 5088-5090. doi:10.1073/pnas.74.11.5088. ISSN 0027-8424. PMC 432104. PMID 270744.
- Gill, S. R.; Pop, M.; DeBoy, R. T.; Eckburg, P. B.; Turnbaugh, P. J.; Samuel, B. S.; Gordon, J. I.; Relman, D. A. et al. (2006-06-02). “Metagenomic Analysis of the Human Distal Gut Microbiome” (英語). Science 312 (5778): 1355-1359. doi:10.1126/science.1124234. ISSN 0036-8075. PMC 3027896. PMID 16741115.
- Zhernakova, Alexandra; Kurilshikov, Alexander; Bonder, Marc Jan; Tigchelaar, Ettje F.; Schirmer, Melanie; Vatanen, Tommi; Mujagic, Zlatan; Vila, Arnau Vich et al. (2016-04-29). “Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity” (英語). Science 352 (6285): 565-569. doi:10.1126/science.aad3369. ISSN 0036-8075. PMC 5240844. PMID 27126040.
- Tsai, Yu-Chih; Conlan, Sean; Deming, Clayton; NISC Comparative Sequencing Program; Segre, Julia A.; Kong, Heidi H.; Korlach, Jonas; Oh, Julia (2016-02-09). “Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing”. mBio 7 (1): e01948–01915. doi:10.1128/mBio.01948-15. ISSN 2150-7511. PMC 4752602. PMID 26861018.
nii.ac.jp
ci.nii.ac.jp
- 百町満朗「生物防除研究の現状と展望」『日本植物病理學會報』第79巻第3号、日本植物病理學會、2013年8月、123-127頁、doi:10.3186/jjphytopath.79.123、ISSN 00319473、NAID 10031191400。
- 山本純之、磯﨑行雄「ストロマトライト研究の歴史と今後の展望」『地學雜誌』第122巻第5号、東京地学協会、2013年、791-806頁、doi:10.5026/jgeography.122.791、ISSN 0022-135X、NAID 130003385928。
nistep.go.jp
- 本間 央之 (2014). “医療イノベーションに向けた 腸管微生物叢研究の展開 ―微生物叢移植とその発展型を巡る研究開発と実用化の動向―”. 科学技術動向研究 (146).
oup.com
academic.oup.com
- Hammer, Tobin J.; Sanders, Jon G.; Fierer, Noah (2019-05-01). “Not all animals need a microbiome” (英語). FEMS Microbiology Letters 366 (10). doi:10.1093/femsle/fnz117. ISSN 0378-1097.
plos.org
journals.plos.org
- Sender, Ron; Fuchs, Shai; Milo, Ron (2016-08-19). “Revised Estimates for the Number of Human and Bacteria Cells in the Body” (英語). PLOS Biology 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. ISSN 1545-7885. PMC 4991899. PMID 27541692.
pnas.org
- Bar-On, Yinon M.; Phillips, Rob; Milo, Ron (2018-05-21). “The biomass distribution on Earth” (英語). Proceedings of the National Academy of Sciences 115 (25): 6506-6511. doi:10.1073/pnas.1711842115. ISSN 0027-8424.
- Whitman, William B.; Coleman, David C.; Wiebe, William J. (1998-06-09). “Prokaryotes: The unseen majority” (英語). Proceedings of the National Academy of Sciences 95 (12): 6578-6583. doi:10.1073/pnas.95.12.6578. ISSN 0027-8424. PMID 9618454.
- Woese, Carl R.; Fox, George E. (1977-11-01). “Phylogenetic structure of the prokaryotic domain: The primary kingdoms” (英語). Proceedings of the National Academy of Sciences 74 (11): 5088-5090. doi:10.1073/pnas.74.11.5088. ISSN 0027-8424. PMC 432104. PMID 270744.
sciencedirect.com
- Wylie, Kristine M.; Weinstock, George M.; Storch, Gregory A. (2012-10-01). “Emerging view of the human virome” (英語). Translational Research 160 (4): 283-290. doi:10.1016/j.trsl.2012.03.006. ISSN 1931-5244.
- Afshinnekoo, Ebrahim; Meydan, Cem; Chowdhury, Shanin; Jaroudi, Dyala; Boyer, Collin; Bernstein, Nick; Maritz, Julia M.; Reeves, Darryl et al. (2015-07-29). “Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics” (英語). Cell Systems 1 (1): 72-87. doi:10.1016/j.cels.2015.01.001. ISSN 2405-4712.
sciencemag.org
sciencemag.org
- Ezenwa, V. O.; Gerardo, N. M.; Inouye, D. W.; Medina, M.; Xavier, J. B. (2012-10-12). “Animal Behavior and the Microbiome” (英語). Science 338 (6104): 198-199. doi:10.1126/science.1227412. ISSN 0036-8075.
- Ley, R. E.; Hamady, M.; Lozupone, C.; Turnbaugh, P. J.; Ramey, R. R.; Bircher, J. S.; Schlegel, M. L.; Tucker, T. A. et al. (2008-06-20). “Evolution of Mammals and Their Gut Microbes” (英語). Science 320 (5883): 1647-1651. doi:10.1126/science.1155725. ISSN 0036-8075. PMC 2649005. PMID 18497261.
- Gill, S. R.; Pop, M.; DeBoy, R. T.; Eckburg, P. B.; Turnbaugh, P. J.; Samuel, B. S.; Gordon, J. I.; Relman, D. A. et al. (2006-06-02). “Metagenomic Analysis of the Human Distal Gut Microbiome” (英語). Science 312 (5778): 1355-1359. doi:10.1126/science.1124234. ISSN 0036-8075. PMC 3027896. PMID 16741115.
- Zhernakova, Alexandra; Kurilshikov, Alexander; Bonder, Marc Jan; Tigchelaar, Ettje F.; Schirmer, Melanie; Vatanen, Tommi; Mujagic, Zlatan; Vila, Arnau Vich et al. (2016-04-29). “Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity” (英語). Science 352 (6285): 565-569. doi:10.1126/science.aad3369. ISSN 0036-8075. PMC 5240844. PMID 27126040.
science.sciencemag.org
- Costello, Elizabeth K.; Lauber, Christian L.; Hamady, Micah; Fierer, Noah; Gordon, Jeffrey I.; Knight, Rob (2009-12-18). “Bacterial Community Variation in Human Body Habitats Across Space and Time” (英語). Science 326 (5960): 1694-1697. doi:10.1126/science.1177486. ISSN 0036-8075. PMID 19892944.
warwick.ac.uk
wrap.warwick.ac.uk
- Whipps, J.m.; Hand, P.; Pink, D.; Bending, G.d. (2008-12-01). “Phyllosphere microbiology with special reference to diversity and plant genotype” (英語). Journal of Applied Microbiology 105 (6): 1744-1755. doi:10.1111/j.1365-2672.2008.03906.x. ISSN 1365-2672. PMID 19120625.
wiley.com
sfamjournals.onlinelibrary.wiley.com
- Filippis, Francesca De; Parente, Eugenio; Ercolini, Danilo (2017). “Metagenomics insights into food fermentations” (英語). Microbial Biotechnology 10 (1): 91-102. doi:10.1111/1751-7915.12421. ISSN 1751-7915. PMC 5270737. PMID 27709807.
worldcat.org
search.worldcat.org
- Marchesi, Julian R.; Ravel, Jacques (2015-12). “The vocabulary of microbiome research: a proposal” (英語). Microbiome 3 (1): 31, s40168-015-0094-5. doi:10.1186/s40168-015-0094-5. ISSN 2049-2618. PMC 4520061. PMID 26229597.
- Inoue, Ryo (2019-03-14). “ABCs for analysis of gut microbiota”. Japanese Journal of Lactic Acid Bacteria 30 (1): 27-31. doi:10.4109/jslab.30.27. ISSN 1343-327X.
- Kusumoto, Ken-Ichi (2011). “Metagenomic Analysis”. Nippon Shokuhin Kagaku Kogaku Kaishi 58 (3): 136-136. doi:10.3136/nskkk.58.136. ISSN 1341-027X.
- Rowan-Nash, Aislinn D.; Korry, Benjamin J.; Mylonakis, Eleftherios; Belenky, Peter (2019-01-09). “Cross-Domain and Viral Interactions in the Microbiome” (英語). Microbiology and Molecular Biology Reviews 83 (1): e00044-18, /mmbr/83/1/e00044-18.atom. doi:10.1128/MMBR.00044-18. ISSN 1092-2172. PMC 6383444. PMID 30626617.
- Moyes, David L.; Naglik, Julian R. (2012-06-14). “The Mycobiome: Influencing IBD Severity” (English). Cell Host & Microbe 11 (6): 551-552. doi:10.1016/j.chom.2012.05.009. ISSN 1931-3128. PMID 22704612.
- Zhao, Liping (2010-06). “The tale of our other genome” (英語). Nature 465 (7300): 879-880. doi:10.1038/465879a. ISSN 1476-4687.
- Grice, Elizabeth A.; Segre, Julia A. (2012). “The human microbiome: our second genome”. Annual Review of Genomics and Human Genetics 13: 151-170. doi:10.1146/annurev-genom-090711-163814. ISSN 1545-293X. PMC 3518434. PMID 22703178.
- Knight, Rob; Vrbanac, Alison; Taylor, Bryn C.; Aksenov, Alexander; Callewaert, Chris; Debelius, Justine; Gonzalez, Antonio; Kosciolek, Tomasz et al. (07 2018). “Best practices for analysing microbiomes”. Nature Reviews. Microbiology 16 (7): 410-422. doi:10.1038/s41579-018-0029-9. ISSN 1740-1534. PMID 29795328.
- Cui, Lijia; Morris, Alison; Ghedin, Elodie (2013). “The human mycobiome in health and disease”. Genome Medicine 5 (7): 63. doi:10.1186/gm467. ISSN 1756-994X. PMC 3978422. PMID 23899327.
- Mohiuddin, Mohammad; Schellhorn, Herb (2015). “Spatial and temporal dynamics of virus occurrence in two freshwater lakes captured through metagenomic analysis” (English). Frontiers in Microbiology 6. doi:10.3389/fmicb.2015.00960. ISSN 1664-302X.
- Kleiner, Manuel; Hooper, Lora V.; Duerkop, Breck A. (2015-01-22). “Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes” (英語). BMC Genomics 16 (1): 7. doi:10.1186/s12864-014-1207-4. ISSN 1471-2164. PMC 4308010. PMID 25608871.
- Wylie, Kristine M.; Weinstock, George M.; Storch, Gregory A. (2012-10-01). “Emerging view of the human virome” (英語). Translational Research 160 (4): 283-290. doi:10.1016/j.trsl.2012.03.006. ISSN 1931-5244.
- Breitbart, Mya; Salamon, Peter; Andresen, Bjarne; Mahaffy, Joseph M.; Segall, Anca M.; Mead, David; Azam, Farooq; Rohwer, Forest (2002-10-29). “Genomic analysis of uncultured marine viral communities”. Proceedings of the National Academy of Sciences of the United States of America 99 (22): 14250-14255. doi:10.1073/pnas.202488399. ISSN 0027-8424. PMC 137870. PMID 12384570.
- Byrd, Allyson L.; Belkaid, Yasmine; Segre, Julia A. (2018-03). “The human skin microbiome” (英語). Nature Reviews Microbiology 16 (3): 143-155. doi:10.1038/nrmicro.2017.157. ISSN 1740-1526.
- Sender, Ron; Fuchs, Shai; Milo, Ron (2016-08-19). “Revised Estimates for the Number of Human and Bacteria Cells in the Body” (英語). PLOS Biology 14 (8): e1002533. doi:10.1371/journal.pbio.1002533. ISSN 1545-7885. PMC 4991899. PMID 27541692.
- NIH HMP Working Group; Peterson, Jane; Garges, Susan; Giovanni, Maria; McInnes, Pamela; Wang, Lu; Schloss, Jeffery A.; Bonazzi, Vivien et al. (2009-12). “The NIH Human Microbiome Project”. Genome Research 19 (12): 2317-2323. doi:10.1101/gr.096651.109. ISSN 1549-5469. PMC 2792171. PMID 19819907.
- Qin, Junjie; Li, Ruiqiang; Raes, Jeroen; Arumugam, Manimozhiyan; Burgdorf, Kristoffer Solvsten; Manichanh, Chaysavanh; Nielsen, Trine; Pons, Nicolas et al. (2010-03). “A human gut microbial gene catalogue established by metagenomic sequencing” (英語). Nature 464 (7285): 59-65. doi:10.1038/nature08821. ISSN 1476-4687.
- Costello, Elizabeth K.; Lauber, Christian L.; Hamady, Micah; Fierer, Noah; Gordon, Jeffrey I.; Knight, Rob (2009-12-18). “Bacterial Community Variation in Human Body Habitats Across Space and Time” (英語). Science 326 (5960): 1694-1697. doi:10.1126/science.1177486. ISSN 0036-8075. PMID 19892944.
- The Human Microbiome Project Consortium (2012-06). “Structure, function and diversity of the healthy human microbiome” (英語). Nature 486 (7402): 207-214. doi:10.1038/nature11234. ISSN 0028-0836. PMC 3564958. PMID 22699609.
- Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric; Metcalf, Jessica; Amato, Katherine; Taylor, Michael W.; Mazel, Florent; Lutz, Holly L. et al. (2020-02-25). Graf, Joerg. ed. “Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats” (英語). mBio 11 (1). doi:10.1128/mBio.02901-19. ISSN 2161-2129. PMC 6946802. PMID 31911491.
- Ezenwa, V. O.; Gerardo, N. M.; Inouye, D. W.; Medina, M.; Xavier, J. B. (2012-10-12). “Animal Behavior and the Microbiome” (英語). Science 338 (6104): 198-199. doi:10.1126/science.1227412. ISSN 0036-8075.
- Hammer, Tobin J.; Sanders, Jon G.; Fierer, Noah (2019-05-01). “Not all animals need a microbiome” (英語). FEMS Microbiology Letters 366 (10). doi:10.1093/femsle/fnz117. ISSN 0378-1097.
- Caugant, Dominique A.; Levin, B. R.; Selander, R. K. (1984-06). “Distribution of multilocus genotypes of Escherichia coli within and between host families” (英語). Journal of Hygiene 92 (3): 377-384. doi:10.1017/S0022172400064597. ISSN 0022-1724. PMC 2129322. PMID 6376625.
- Song, Se Jin; Lauber, Christian; Costello, Elizabeth K; Lozupone, Catherine A; Humphrey, Gregory; Berg-Lyons, Donna; Caporaso, J Gregory; Knights, Dan et al. (2013-04-16). Weigel, Detlef. ed. “Cohabiting family members share microbiota with one another and with their dogs”. eLife 2: e00458. doi:10.7554/eLife.00458. ISSN 2050-084X.
- Ley, R. E.; Hamady, M.; Lozupone, C.; Turnbaugh, P. J.; Ramey, R. R.; Bircher, J. S.; Schlegel, M. L.; Tucker, T. A. et al. (2008-06-20). “Evolution of Mammals and Their Gut Microbes” (英語). Science 320 (5883): 1647-1651. doi:10.1126/science.1155725. ISSN 0036-8075. PMC 2649005. PMID 18497261.
- Muegge, Brian D.; Kuczynski, Justin; Knights, Dan; Clemente, Jose C.; González, Antonio; Fontana, Luigi; Henrissat, Bernard; Knight, Rob et al. (2011-05-20). “Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans”. Science (New York, N.Y.) 332 (6032): 970-974. doi:10.1126/science.1198719. ISSN 1095-9203. PMC 3303602. PMID 21596990.
- Karasov, William H.; Douglas, Angela E. (2013-4). “Comparative Digestive Physiology”. Comprehensive Physiology 3 (2): 741-783. doi:10.1002/cphy.c110054. ISSN 2040-4603. PMC 4458075. PMID 23720328.
- Myer, Phillip R. (2019-06-25). “Bovine Genome-Microbiome Interactions: Metagenomic Frontier for the Selection of Efficient Productivity in Cattle Systems” (英語). mSystems 4 (3). doi:10.1128/mSystems.00103-19. ISSN 2379-5077. PMID 31219789.
- Whipps, J.m.; Hand, P.; Pink, D.; Bending, G.d. (2008-12-01). “Phyllosphere microbiology with special reference to diversity and plant genotype” (英語). Journal of Applied Microbiology 105 (6): 1744-1755. doi:10.1111/j.1365-2672.2008.03906.x. ISSN 1365-2672. PMID 19120625.
- 百町満朗「生物防除研究の現状と展望」『日本植物病理學會報』第79巻第3号、日本植物病理學會、2013年8月、123-127頁、doi:10.3186/jjphytopath.79.123、ISSN 00319473、NAID 10031191400。
- Bar-On, Yinon M.; Phillips, Rob; Milo, Ron (2018-05-21). “The biomass distribution on Earth” (英語). Proceedings of the National Academy of Sciences 115 (25): 6506-6511. doi:10.1073/pnas.1711842115. ISSN 0027-8424.
- Blasiak, R.; Wynberg, R.; Grorud-Colvert, K.; Thambisetty, S.; Bandarra, N. M.; Canário, A. V. M.; da Silva, J.; Duarte, C. M. et al. (2020-08). “The ocean genome and future prospects for conservation and equity” (英語). Nature Sustainability 3 (8): 588-596. doi:10.1038/s41893-020-0522-9. ISSN 2398-9629.
- Gilbert, Jack A.; Jansson, Janet K.; Knight, Rob (2014-08-22). “The Earth Microbiome project: successes and aspirations”. BMC Biology 12 (1): 69. doi:10.1186/s12915-014-0069-1. ISSN 1741-7007.
- Gilbert, Jack A.; Jansson, Janet K.; Knight, Rob (2018-06-26). “Earth Microbiome Project and Global Systems Biology” (英語). mSystems 3 (3). doi:10.1128/mSystems.00217-17. ISSN 2379-5077.
- Thompson, Luke R.; Sanders, Jon G.; McDonald, Daniel; Amir, Amnon; Ladau, Joshua; Locey, Kenneth J.; Prill, Robert J.; Tripathi, Anupriya et al. (2017-11). “A communal catalogue reveals Earth’s multiscale microbial diversity” (英語). Nature 551 (7681): 457-463. doi:10.1038/nature24621. ISSN 1476-4687.
- Caporaso, J Gregory; Kuczynski, Justin; Stombaugh, Jesse; Bittinger, Kyle; Bushman, Frederic D; Costello, Elizabeth K; Fierer, Noah; Peña, Antonio Gonzalez et al. (2010-05). “QIIME allows analysis of high-throughput community sequencing data” (英語). Nature Methods 7 (5): 335-336. doi:10.1038/nmeth.f.303. ISSN 1548-7091.
- Fierer, Noah (2017-10). “Embracing the unknown: disentangling the complexities of the soil microbiome” (英語). Nature Reviews Microbiology 15 (10): 579-590. doi:10.1038/nrmicro.2017.87. ISSN 1740-1526.
- Whitman, William B.; Coleman, David C.; Wiebe, William J. (1998-06-09). “Prokaryotes: The unseen majority” (英語). Proceedings of the National Academy of Sciences 95 (12): 6578-6583. doi:10.1073/pnas.95.12.6578. ISSN 0027-8424. PMID 9618454.
- 山本純之、磯﨑行雄「ストロマトライト研究の歴史と今後の展望」『地學雜誌』第122巻第5号、東京地学協会、2013年、791-806頁、doi:10.5026/jgeography.122.791、ISSN 0022-135X、NAID 130003385928。
- NAGANUMA, Takeshi (2004). “Deep Subsurface Biosphere: a New Look of Geo-Biological Resources”. Shigen-to-Sozai 120 (1): 1-9. doi:10.2473/shigentosozai.120.1. ISSN 0916-1740.
- Ijiri, Akira (2020-01-15). “Significance of biogeochemical processes in mud volcanoes”. The Journal of the Geological Society of Japan 126 (1): 29-37. doi:10.5575/geosoc.2019.0044. ISSN 0016-7630.
- Gilbert, Jack A.; Stephens, Brent (2018-11). “Microbiology of the built environment” (英語). Nature Reviews Microbiology 16 (11): 661-670. doi:10.1038/s41579-018-0065-5. ISSN 1740-1526.
- Afshinnekoo, Ebrahim; Meydan, Cem; Chowdhury, Shanin; Jaroudi, Dyala; Boyer, Collin; Bernstein, Nick; Maritz, Julia M.; Reeves, Darryl et al. (2015-07-29). “Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics” (英語). Cell Systems 1 (1): 72-87. doi:10.1016/j.cels.2015.01.001. ISSN 2405-4712.
- Filippis, Francesca De; Parente, Eugenio; Ercolini, Danilo (2017). “Metagenomics insights into food fermentations” (英語). Microbial Biotechnology 10 (1): 91-102. doi:10.1111/1751-7915.12421. ISSN 1751-7915. PMC 5270737. PMID 27709807.
- Cao, Yu; Fanning, Séamus; Proos, Sinéad; Jordan, Kieran; Srikumar, Shabarinath (2017-09-21). “A Review on the Applications of Next Generation Sequencing Technologies as Applied to Food-Related Microbiome Studies”. Frontiers in Microbiology 8: 1829. doi:10.3389/fmicb.2017.01829. ISSN 1664-302X. PMC 5627019. PMID 29033905.
- Amann, R I; Ludwig, W; Schleifer, K H (1995-03). “Phylogenetic identification and in situ detection of individual microbial cells without cultivation.”. Microbiological Reviews 59 (1): 143-169. ISSN 0146-0749. PMC 239358. PMID 7535888.
- SAKUDA, SHOHEI (2002). Kagaku To Seibutsu 40 (9): 600-605. doi:10.1271/kagakutoseibutsu1962.40.600. ISSN 0453-073X. https://doi.org/10.1271/kagakutoseibutsu1962.40.600.
- Woese, Carl R.; Fox, George E. (1977-11-01). “Phylogenetic structure of the prokaryotic domain: The primary kingdoms” (英語). Proceedings of the National Academy of Sciences 74 (11): 5088-5090. doi:10.1073/pnas.74.11.5088. ISSN 0027-8424. PMC 432104. PMID 270744.
- Giovannoni, Stephen J.; Britschgi, Theresa B.; Moyer, Craig L.; Field, Katharine G. (1990-05). “Genetic diversity in Sargasso Sea bacterioplankton” (英語). Nature 345 (6270): 60-63. doi:10.1038/345060a0. ISSN 0028-0836.
- YAMADA, Takuji (2013). “Human Gut Metagenomic Analysis toward Clinical Studies”. KAGAKU TO SEIBUTSU 51 (12): 802-808. doi:10.1271/kagakutoseibutsu.51.802. ISSN 0453-073X.
- Gill, S. R.; Pop, M.; DeBoy, R. T.; Eckburg, P. B.; Turnbaugh, P. J.; Samuel, B. S.; Gordon, J. I.; Relman, D. A. et al. (2006-06-02). “Metagenomic Analysis of the Human Distal Gut Microbiome” (英語). Science 312 (5778): 1355-1359. doi:10.1126/science.1124234. ISSN 0036-8075. PMC 3027896. PMID 16741115.
- Zhernakova, Alexandra; Kurilshikov, Alexander; Bonder, Marc Jan; Tigchelaar, Ettje F.; Schirmer, Melanie; Vatanen, Tommi; Mujagic, Zlatan; Vila, Arnau Vich et al. (2016-04-29). “Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity” (英語). Science 352 (6285): 565-569. doi:10.1126/science.aad3369. ISSN 0036-8075. PMC 5240844. PMID 27126040.
- Frank, J. A.; Pan, Y.; Tooming-Klunderud, A.; Eijsink, V. G. H.; McHardy, A. C.; Nederbragt, A. J.; Pope, P. B. (2016-05-09). “Improved metagenome assemblies and taxonomic binning using long-read circular consensus sequence data” (英語). Scientific Reports 6 (1): 25373. doi:10.1038/srep25373. ISSN 2045-2322.
- Tsai, Yu-Chih; Conlan, Sean; Deming, Clayton; NISC Comparative Sequencing Program; Segre, Julia A.; Kong, Heidi H.; Korlach, Jonas; Oh, Julia (2016-02-09). “Resolving the Complexity of Human Skin Metagenomes Using Single-Molecule Sequencing”. mBio 7 (1): e01948–01915. doi:10.1128/mBio.01948-15. ISSN 2150-7511. PMC 4752602. PMID 26861018.
- Liu, Yong-Xin; Qin, Yuan; Chen, Tong; Lu, Meiping; Qian, Xubo; Guo, Xiaoxuan; Bai, Yang (2021-05-01). “A practical guide to amplicon and metagenomic analysis of microbiome data” (英語). Protein & Cell 12 (5): 315–330. doi:10.1007/s13238-020-00724-8. ISSN 1674-8018.