Thornton, J. M.; Bayley, P. M. «Conformational energy calculations for dinucleotide molecules. A systematic study of dinucleotide conformation, with application to diadenosine pyrophosphate». Biopolymers, 15, 5, 1976, pàg. 955–975. DOI: 10.1002/bip.1976.360150511. PMID: 177120.
Perkins, W. J.; Piper, E. A.; Thornton, J. «Computer techniques for conformational studies of biological molecules». Computers in Biology and Medicine, 6, 1, 1976, pàg. 23–31. DOI: 10.1016/0010-4825(76)90034-2. PMID: 1253578.
Laskowski, R. A.; MacArthur, M. W.; Moss, D. S.; Thornton, J. M. «PROCHECK: A program to check the stereochemical quality of protein structures». Journal of Applied Crystallography, 26, 2, 1993, pàg. 283–291. DOI: 10.1107/S0021889892009944.
Pearl, F. M.; Bennett, C. F.; Bray, J. E.; Harrison, A. P.; Martin, N; Shepherd, A; Sillitoe, I; Thornton, J; Orengo, C. A. «The CATH database: An extended protein family resource for structural and functional genomics». Nucleic Acids Research, 31, 1, 2003, pàg. 452–5. DOI: 10.1093/nar/gkg062. PMC: 165509. PMID: 12520050.
Sibanda, B. L.; Blundell, T. L.; Thornton, J. M. «Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering». Journal of Molecular Biology, 206, 4, 1989, pàg. 759–77. DOI: 10.1016/0022-2836(89)90583-4. PMID: 2500530.
Thornton, J. M.; Singh, J; Campbell, S; Blundell, T. L. «Protein-protein recognition via side-chain interactions». Biochemical Society Transactions, 16, 6, 1988, pàg. 927–30. DOI: 10.1042/bst0160927. PMID: 3224756.
Reeves, G. A.; Eilbeck, K.; Magrane, M.; O'Donovan, C.; Montecchi-Palazzi, L.; Harris, M. A.; Orchard, S.; Jimenez, R. C.; Prlic, A. «The Protein Feature Ontology: A tool for the unification of protein feature annotations». Bioinformatics, 24, 23, 2008, pàg. 2767–2772. DOI: 10.1093/bioinformatics/btn528. PMC: 2912506. PMID: 18936051.
Rahman, S. A.; Cuesta, S. M.; Furnham, N.; Holliday, G. L.; Thornton, J. M. «EC-BLAST: A tool to automatically search and compare enzyme reactions». Nature Methods, 11, 2, 2014, pàg. 171–4. DOI: 10.1038/nmeth.2803. PMC: 4122987. PMID: 24412978.
Rahman, Syed Asad; Cuesta, Sergio Martinez; Furnham, Nicholas; Holliday, Gemma L.; Thornton, Janet M. «EC-BLAST: a tool to automatically search and compare enzyme reactions» (en anglès). Nature Methods, 11, 2, 01-02-2014, pàg. 171–174. DOI: 10.1038/nmeth.2803. ISSN: 1548-7091. PMC: 4122987. PMID: 24412978.
Rahman, Syed Asad; Torrance, Gilliean; Baldacci, Lorenzo; Martínez Cuesta, Sergio; Fenninger, Franz; Gopal, Nimish; Choudhary, Saket; May, John W.; Holliday, Gemma L. «Reaction Decoder Tool (RDT): extracting features from chemical reactions». Bioinformatics, 32, 13, 01-07-2016, pàg. 2065–2066. DOI: 10.1093/bioinformatics/btw096. ISSN: 1367-4811. PMC: 4920114. PMID: 27153692.
Thornton, J. M.; Bayley, P. M. «Conformational energy calculations for dinucleotide molecules. A systematic study of dinucleotide conformation, with application to diadenosine pyrophosphate». Biopolymers, 15, 5, 1976, pàg. 955–975. DOI: 10.1002/bip.1976.360150511. PMID: 177120.
Perkins, W. J.; Piper, E. A.; Thornton, J. «Computer techniques for conformational studies of biological molecules». Computers in Biology and Medicine, 6, 1, 1976, pàg. 23–31. DOI: 10.1016/0010-4825(76)90034-2. PMID: 1253578.
Pearl, F. M.; Bennett, C. F.; Bray, J. E.; Harrison, A. P.; Martin, N; Shepherd, A; Sillitoe, I; Thornton, J; Orengo, C. A. «The CATH database: An extended protein family resource for structural and functional genomics». Nucleic Acids Research, 31, 1, 2003, pàg. 452–5. DOI: 10.1093/nar/gkg062. PMC: 165509. PMID: 12520050.
Sibanda, B. L.; Blundell, T. L.; Thornton, J. M. «Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering». Journal of Molecular Biology, 206, 4, 1989, pàg. 759–77. DOI: 10.1016/0022-2836(89)90583-4. PMID: 2500530.
Thornton, J. M.; Singh, J; Campbell, S; Blundell, T. L. «Protein-protein recognition via side-chain interactions». Biochemical Society Transactions, 16, 6, 1988, pàg. 927–30. DOI: 10.1042/bst0160927. PMID: 3224756.
Reeves, G. A.; Eilbeck, K.; Magrane, M.; O'Donovan, C.; Montecchi-Palazzi, L.; Harris, M. A.; Orchard, S.; Jimenez, R. C.; Prlic, A. «The Protein Feature Ontology: A tool for the unification of protein feature annotations». Bioinformatics, 24, 23, 2008, pàg. 2767–2772. DOI: 10.1093/bioinformatics/btn528. PMC: 2912506. PMID: 18936051.
Rahman, S. A.; Cuesta, S. M.; Furnham, N.; Holliday, G. L.; Thornton, J. M. «EC-BLAST: A tool to automatically search and compare enzyme reactions». Nature Methods, 11, 2, 2014, pàg. 171–4. DOI: 10.1038/nmeth.2803. PMC: 4122987. PMID: 24412978.
Rahman, Syed Asad; Cuesta, Sergio Martinez; Furnham, Nicholas; Holliday, Gemma L.; Thornton, Janet M. «EC-BLAST: a tool to automatically search and compare enzyme reactions» (en anglès). Nature Methods, 11, 2, 01-02-2014, pàg. 171–174. DOI: 10.1038/nmeth.2803. ISSN: 1548-7091. PMC: 4122987. PMID: 24412978.
Rahman, Syed Asad; Torrance, Gilliean; Baldacci, Lorenzo; Martínez Cuesta, Sergio; Fenninger, Franz; Gopal, Nimish; Choudhary, Saket; May, John W.; Holliday, Gemma L. «Reaction Decoder Tool (RDT): extracting features from chemical reactions». Bioinformatics, 32, 13, 01-07-2016, pàg. 2065–2066. DOI: 10.1093/bioinformatics/btw096. ISSN: 1367-4811. PMC: 4920114. PMID: 27153692.