Archea (Czech Wikipedia)

Analysis of information sources in references of the Wikipedia article "Archea" in Czech language version.

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archaea.ws

archive.org

archive.today

  • Schleper C., Holz I., Janekovic D., Murphy J., Zillig W. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol.. 1995, roč. 177, čís. 15, s. 4417–26. Dostupné v archivu pořízeném dne 2012-05-29. PMID 7635827. 

asm.org

mmbr.asm.org

  • Woese C. R. There must be a prokaryote somewhere: microbiology's search for itself. Microbiol. Rev.. March 1994, roč. 58, čís. 1, s. 1–9. Dostupné online. PMID 8177167. 
  • Koga Y., Morii H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev.. 2007, roč. 71, čís. 1, s. 97–120. Dostupné online. DOI 10.1128/MMBR.00033-06. PMID 17347520. 
  • De Rosa M., Gambacorta A., Gliozzi A. Structure, biosynthesis, and physicochemical properties of archaebacterial lipids. Microbiol. Rev.. 1986, roč. 50, čís. 1, s. 70–80. Dostupné online. PMID 3083222. 
  • Schäfer G., Engelhard M., Müller V. Bioenergetics of the Archaea. Microbiol. Mol. Biol. Rev.. September 1999, roč. 63, čís. 3, s. 570–620. Dostupné online. PMID 10477309. 

jb.asm.org

aem.asm.org

bacterio.net

  • LPSN – List of Prokaryotic names with Standing in Nomenclature Dostupné online (anglicky)

biochemsoctrans.org

biology-direct.com

  • WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN 1745-6150. DOI 10.1186/1745-6150-7-46. (anglicky) 

biorxiv.org

  • FARAG, Ibrahim F.; ZHAO, Rui; BIDDLE, Jennifer F. “Sifarchaeota” a novel Asgard phylum capable of polysaccharide degradation and anaerobic methylotrophy. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-15 [cit. 2021-02-02]. Preprint. Dostupné online. DOI 10.1101/2020.10.14.339440. (anglicky) 
  • LIU, Yang; MAKAROVA, Kira S.; HUANG, Wen-Cong; WOLF, Yuri I.; NIKOLSKAYA, Anastasia; ZHANG, Xinxu; CAI, Mingwei. Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-20. Preprint. Dostupné online. DOI 10.1101/2020.10.19.343400. (anglicky) 

bioscience.org

  • Albers S. V., van de Vossenberg J. L., Driessen A. J., Konings W. N. Adaptations of the archaeal cell membrane to heat stress. Front. Biosci.. Září 2000, roč. 5, s. D813–20. Dostupné online. PMID 10966867. 

cshlp.org

cshperspectives.cshlp.org

doi.org

dx.doi.org

  • Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U.S.A.. 1990, roč. 87, čís. 12, s. 4576–9. Dostupné online. DOI 10.1073/pnas.87.12.4576. PMID 2112744. 
  • Staley J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1899–909. Dostupné online. DOI 10.1098/rstb.2006.1914. PMID 17062409. 
  • Zuckerkandl E., Pauling L. Molecules as documents of evolutionary history. J. Theor. Biol.. 1965, roč. 8, čís. 2, s. 357–66. DOI 10.1016/0022-5193(65)90083-4. PMID 5876245. 
  • Woese C., Fox G. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA. 1977, roč. 74, čís. 11, s. 5088–90. Dostupné online. DOI 10.1073/pnas.74.11.5088. PMID 270744. 
  • DeLong E. F. Everything in moderation: archaea as 'non-extremophiles'. Curr. Opin. Genet. Dev.. 1998, roč. 8, čís. 6, s. 649–54. DOI 10.1016/S0959-437X(98)80032-4. PMID 9914204. 
  • Theron J., Cloete T.E. Molecular techniques for determining microbial diversity and community structure in natural environments. Crit. Rev. Microbiol.. 2000, roč. 26, čís. 1, s. 37–57. DOI 10.1080/10408410091154174. PMID 10782339. 
  • SPANG, Anja; MARTIJN, Joran; SAW, Jimmy H., LIND, Anders E.; GUY, Lionel; ETTEMA, Thijs J. G. Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution. S. 1–12. Archaea [online]. 2013. Svazek 2013:202358, s. 1–12. Dostupné online. PDF [2]. DOI 10.1155/2013/202358. (anglicky) 
  • Gevers D., Dawyndt P., Vandamme P., et al. Stepping stones towards a new prokaryotic taxonomy. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1911–6. Dostupné online. DOI 10.1098/rstb.2006.1915. PMID 17062410. 
  • Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont.. Nature. 2002, roč. 417, čís. 6884, s. 27–8. DOI 10.1038/417063a. PMID 11986665. 
  • Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U.S.A.. 1996, roč. 93, čís. 17, s. 9188–93. Dostupné online. DOI 10.1073/pnas.93.17.9188. PMID 8799176. 
  • Elkins J. G., Podar M., Graham D. E., et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc. Natl. Acad. Sci. U.S.A.. June 2008, roč. 105, čís. 23, s. 8102–7. Dostupné online. DOI 10.1073/pnas.0801980105. PMID 18535141. 
  • Brochier-Armanet C., Boussau B., Gribaldo S., Forterre P. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.. Nature Reviews Microbiology. 2008, roč. 6, s. 245–252. DOI 10.1038/nrmicro1852. 
  • NUNOURA, Takuro, et al.. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. S. 3204–3223. Nucleic Acids Research [online]. 15. prosinec 2010. Svazek 39, čís. 8, s. 3204–3223. Dostupné online. DOI 10.1093/nar/gkq1228. (anglicky) 
  • KOZUBAL, Mark A.; ROMINE, Margaret; JENNINGS, Ryan deM., JAY ,Zack J.; TRINGE, Susannah G.; RUSCH, Doug B.; BEAM, Jacob P.; McCUE, Lee Ann; INSKEEP, William P. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. The ISME Journal [online]. 15. listopad 2012. Online před tiskem. Dostupné online. PDF [3]. ISSN 1751-7370. DOI 10.1038/ismej.2012.132. (anglicky) 
  • CASTELLE, Cindy J., et al.. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. S. 690–701. Current Biology [online]. 19. únor 2015. Svazek 25, čís. 6, s. 690–701. Dostupné online. ISSN 0960-9822. DOI 10.1016/j.cub.2015.01.014. PMID 25702576. (anglicky) 
  • GUY, Lionel, et al.. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. S. 1353–1357. The ISME Journal [online]. 13. únor 2014. Svazek 8, čís. 7, s. 1353–1357. Dostupné online. ISSN 1751-7370. DOI 10.1038/ismej.2014.6. PMID 24522265. (anglicky) 
  • WILLIAMS, Tom A.; EMBLEY, T. Martin. Archaeal “Dark Matter” and the Origin of Eukaryotes. S. 474–481. Genome Biology and Evolution [online]. 12. únor 2014. Svazek 6, čís. 3, s. 474–481. Dostupné online. Dostupné také na: [4]. ISSN 1759-6653. DOI 10.1093/gbe/evu031. (anglicky) 
  • RINKE, Christian, et al.. Insights into the phylogeny and coding potential of microbial dark matter. S. 431–437. Nature [online]. 14. červenec 2013. Svazek 499, čís. 7459, s. 431–437. Dostupné online. DOI 10.1038/nature12352. PMID 23851394. (anglicky) 
  • SPANG, Anja; SAW, Jimmy H.; JØRGENSEN, Steffen L., ZAREMBA-NIEDZWIEDZKA, Katarzyna; MARTIJN, Joran; LIND, Anders E.; van EIJK, Roel; SCHLEPER, Christa; GUY, Lionel; ETTEMA, Thijs J. G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature [online]. 6. květen 2015. Online před tiskem. Dostupné online. ISSN 1476-4687. DOI 10.1038/nature14447. PMID 25945739. (anglicky) 
  • SEITZ, Kiley W.; LAZAR, Cassandre S.; HINRICHS, Kai-Uwe, TESKE, Andreas P.; BAKER, Brett J. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The ISME Journal [online]. 29. leden 2016. Online před tiskem. Dostupné online. ISSN 1751-7370. DOI 10.1038/ismej.2015.233. PMID 26824177. (anglicky) 
  • HUG, Laura A., et al.. A new view of the tree of life. Nature Microbiology [online]. 11. duben 2016. Svazek 1, čís. 16048. Online před tiskem. Dostupné online. PDF [5]. ISSN 2058-5276. DOI 10.1038/nmicrobiol.2016.48. PMID 26824177. (anglicky) 
  • VANWONTERGHEM, Inka; EVANS, Paul N.; PARKS, Donovan H.; JENSEN, Paul D.; WOODCROFT, Ben J.; HUGENHOLTZ, Philip; TYSON, Gene W. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. S. 1–9. Nature Microbiology [online]. 3. říjen 2016 [cit. 2016-11-23]. Svazek 1: 16170, s. 1–9. Dostupné online. PDF [6]. ISSN 2058-5276. DOI 10.1038/nmicrobiol.2016.170. PMID 27694807. (anglicky) 
  • ZAREMBA-NIEDZWIEDZKA, Katarzyna; CACERES, Eva F.; SAW, Jimmy H.; BÄCKSTRÖM, Disa; JUZOKAITE, Lina; VANCAESTER, Emmelien; SEITZ, Kiley W., ANANTHARAMAN, Karthik; STARNAWSKI, Piotr; KJELDSEN, Kasper U.; STOTT, Matthew B.; NUNOURA, Takuro; BANFIELD, Jillian F.; SCHRAMM, Andreas; BAKER, Brett J.; SPANG, Anja; ETTEMA, Thijs J. G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. S. 353–358. Nature [online]. Macmillan Publishers Limited, Springer Nature, 11. leden 2017 [cit. 2017-01-23]. Svazek 541, čís. 7637, s. 353–358. Dostupné online. PDF [7]. ISSN 1476-4687. DOI 10.1038/nature21031. PMID 28077874. (anglicky) 
  • JUNGBLUTH, Sean P.; AMEND, Jan P.; RAPPÉ, Michael S. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids. S. 1–11. Scientific Data [online]. Springer Nature Limited, 28. březen 2017. Svazek 4: 170037, s. 1–11. Dostupné online. PDF [8]. Dále dostupné na: [9]. ISSN 2052-4463. DOI 10.1038/sdata.2017.37. PMID 28350381. (anglicky) 
  • CARR, Stephanie A.; JUNGBLUTH, Sean P.; ELOE-FADROSH, Emiley A.; STEPANAUSKAS, Ramunas; WOYKE, Tanja; RAPPÉ, Michael S.; ORCUTT, Beth N. Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. S. 1457–1468. The ISME Journal [online]. Springer Nature Publishing AG, 7. únor 2019. Svazek 13, čís. 6, s. 1457–1468. Dostupné online. pdf [10]. ISSN 1751-7370. DOI 10.1038/s41396-019-0352-9. PMID 30728468. (anglicky) 
  • JAY, Zackary J.; BEAM, Jacob P.; DLAKIĆ, Mensur; RUSCH, Douglas B.; KOZUBAL, Mark A.; INSKEEP, William P. Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. S. 732–740. Nature Microbiology [online]. Macmillan Publishers Limited, 14. květen 2018 [cit. 2018-05-24]. Svazek 3, s. 732–740. Dostupné online. ISSN 2058-5276. DOI 10.1038/s41564-018-0163-1. (anglicky) 
  • WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN 2058-5276. DOI 10.1038/s41564-019-0364-2. PMID 30833728. (anglicky) 
  • SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN 2041-1723. DOI 10.1038/s41467-019-09364-x. PMID 31015394. (anglicky) 
  • CAI, Mingwei; LIU, Yang; YIN, Xiuran, et al. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China Life Sciences [online]. Springer Nature Switzerland AG, 16. březen 2020. Svazek 63. Online před tiskem. Dostupné online. Dostupné také na: [14]. ISSN 1869-1889. DOI 10.1007/s11427-020-1679-1. PMID 32201928. (anglicky) 
  • FARAG, Ibrahim F.; ZHAO, Rui; BIDDLE, Jennifer F. “Sifarchaeota” a novel Asgard phylum capable of polysaccharide degradation and anaerobic methylotrophy. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-15 [cit. 2021-02-02]. Preprint. Dostupné online. DOI 10.1101/2020.10.14.339440. (anglicky) 
  • LIU, Yang; MAKAROVA, Kira S.; HUANG, Wen-Cong; WOLF, Yuri I.; NIKOLSKAYA, Anastasia; ZHANG, Xinxu; CAI, Mingwei. Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-20. Preprint. Dostupné online. DOI 10.1101/2020.10.19.343400. (anglicky) 
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  • Eppley J. M., Tyson G. W., Getz W. M., Banfield J. F. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 2007, roč. 177, čís. 1, s. 407–16. Dostupné online. DOI 10.1534/genetics.107.072892. PMID 17603112. 
  • Papke R. T., Zhaxybayeva O., Feil E. J., Sommerfeld K., Muise D., Doolittle W. .F. Searching for species in haloarchaea. Proc. Natl. Acad. Sci. U.S.A.. 2007, roč. 104, čís. 35, s. 14092–7. Dostupné online. DOI 10.1073/pnas.0706358104. PMID 17715057. 
  • Hugenholtz P. Exploring prokaryotic diversity in the genomic era. Genome Biol.. 2002, roč. 3, čís. 2, s. REVIEWS0003. Dostupné v archivu pořízeném dne 2013-06-21. PDF [15]. DOI 10.1186/gb-2002-3-2-reviews0003. PMID 11864374.  Archivováno 21. 6. 2013 na Wayback Machine.
  • PETITJEAN, Céline; DESCHAMPS, Philippe; LÓPEZ-GARCÍA, Purificación, MOREIRA, David. Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota. S. 191–204. Genome Biology and Evolution [online]. 19. prosinec 2014. Svazek 7, čís. 1, s. 191–204. Dostupné online. PDF [16]. ISSN 1759-6653. DOI 10.1093/gbe/evu274. (anglicky) 
  • CUNHA, Violette Da; GAIA, Morgan; GADELLE, Daniele; NASIR, Arshan; FORTERRE, Patrick. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. S. 1–38. PLoS Genetics [online]. 12. červen 2017. Svazek 13, čís. 6: e1006810, s. 1–38. Dostupné online. ISSN 1553-7404. DOI 10.1371/journal.pgen.1006810. PMID 28604769. (anglicky) 
  • SPANG, Anja; EME, Laura; SAW, Jimmy H.; CACERES, Eva F.; ZAREMBA-NIEDZWIEDZKA, Katarzyna; LOMBARD, Jonathan; GUY, Lionel, ETTEMA, Thijs J. G. Asgard archaea are the closest prokaryotic relatives of eukaryotes. S. 1–4. PLoS Genetics [online]. 29. březen 2018. Svazek 14, čís. 3: e1007080, s. 1–4. Dostupné online. ISSN 1553-7404. DOI 10.1371/journal.pgen.1007080. PMID 29596421. (anglicky) 
  • AOUAD, Monique; TAIB, Najwa; OUDART, Anne; LECOCQ, Michel; GOUY, Manolo; BROCHIER-ARMANET, Céline. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. S. 46–54. Molecular Phylogenetics and Evolution [online]. Elsevier Inc., 21. duben 2018. Svazek 127, s. 46–54. Dostupné online. Dostupné také na: [17]. ISSN 1055-7903. DOI 10.1016/j.ympev.2018.04.011. (anglicky) 
  • BROCHIER-ARMANET, Celine; FORTERRE, Patrick; GRIBALDO, Simonetta. Phylogeny and evolution of the Archaea: one hundred genomes later. S. 274–281. Current Opinion in Microbiology [online]. 2011. Svazek 14, čís. 3, s. 274–281. Dostupné online. DOI 10.1016/j.mib.2011.04.015. (anglicky) 
  • WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN 1745-6150. DOI 10.1186/1745-6150-7-46. (anglicky) 
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  • OREN, Aharon; ARAHAL, David R.; GÖKER, Markus; MOORE, Edward R. B.; ROSSELLO-MORA, Ramon; SUTCLIFFE, Iain C. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-05-01 [cit. 2024-01-25]. Roč. 73, čís. 5a. Dostupné online. ISSN 1466-5034. DOI 10.1099/ijsem.0.005585. PMID 37219928. (anglicky) 
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  • GÖKER, Markus; OREN, Aharon. Valid publication of four additional phylum names. International Journal of Systematic and Evolutionary Microbiology [online]. 2023-09-11. Roč. 73, čís. 9. DOI 10.1099/ijsem.0.006024. (anglicky) 
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  • GÖKER, Markus; OREN, Aharon. Valid publication of names of two domains and seven kingdoms of prokaryotes. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-01-22 [cit. 2024-05-28]. Roč. 74, čís. 1. DOI 10.1099/ijsem.0.006242. (anglicky) 
  • IMACHI, Hiroyuki; NOBU, Masaru K.; KATO, Shingo; TAKAKI, Yoshihiro; MIYAZAKI, Masayuki; MIYATA, Makoto; OGAWARA, Miyuki. Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov.. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-07-05 [cit. 2024-08-14]. Roč. 74, čís. 7. ISSN 1466-5034. DOI 10.1099/ijsem.0.006435. PMID 38967634. (anglicky) 
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