Schiraldi C., Giuliano M., De Rosa M. Perspectives on biotechnological applications of archaea. Archaea. 2002, roč. 1, čís. 2, s. 75–86. Dostupné online. PMID15803645.[nedostupný zdroj]
BENNETT, GM.; MORAN, NA. Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a Phloem-feeding insect.. Genome Biol Evol. 2013, roč. 5, čís. 9, s. 1675-88. Dostupné online. DOI10.1093/gbe/evt118. PMID23918810.
Kostrikina N. A., Zvyagintseva I. S., Duda V. I. Cytological peculiarities of some extremely halophilic soil archaeobacteria. Arch. Microbiol.. 1991, roč. 156, čís. 5, s. 344–49. Dostupné online. DOI10.1007/BF00248708.
Cowen D. A. The upper temperature of life—where do we draw the line?. Trends Microbiol.. February 2004, roč. 12, čís. 2, s. 58–60. Dostupné online. PMID15040324.
Chaban B., Ng S. Y., Jarrell K. F. Archaeal habitats—from the extreme to the ordinary. Can. J. Microbiol.. February 2006, roč. 52, čís. 2, s. 73–116. Dostupné online. DOI10.1139/w05-147. PMID16541146.
Chelius M. K., Triplett EW. The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb. Ecol.. April 2001, roč. 41, čís. 3, s. 252–63. Dostupné online. DOI10.1007/s002480000087. PMID11391463.
Mojica F. J., Díez-Villaseñor C., García-Martínez J., Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol.. 2005, roč. 60, čís. 2, s. 174–82. Dostupné online. DOI10.1007/s00239-004-0046-3. PMID15791728.
archive.today
Schleper C., Holz I., Janekovic D., Murphy J., Zillig W. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol.. 1995, roč. 177, čís. 15, s. 4417–26. Dostupné v archivu pořízeném dne 2012-05-29. PMID7635827.
asm.org
mmbr.asm.org
Woese C. R. There must be a prokaryote somewhere: microbiology's search for itself. Microbiol. Rev.. March 1994, roč. 58, čís. 1, s. 1–9. Dostupné online. PMID8177167.
Koga Y., Morii H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev.. 2007, roč. 71, čís. 1, s. 97–120. Dostupné online. DOI10.1128/MMBR.00033-06. PMID17347520.
De Rosa M., Gambacorta A., Gliozzi A. Structure, biosynthesis, and physicochemical properties of archaebacterial lipids. Microbiol. Rev.. 1986, roč. 50, čís. 1, s. 70–80. Dostupné online. PMID3083222.
Schäfer G., Engelhard M., Müller V. Bioenergetics of the Archaea. Microbiol. Mol. Biol. Rev.. September 1999, roč. 63, čís. 3, s. 570–620. Dostupné online. PMID10477309.
Brock T. D., Gustafson J. Ferric iron reduction by sulfur- and iron-oxidizing bacteria. Appl. Environ. Microbiol.. October 1976, roč. 32, čís. 4, s. 567–71. Dostupné online. PMID825043.Archivováno 29. 5. 2020 na Wayback Machine.
bacterio.net
LPSN – List of Prokaryotic names with Standing in Nomenclature Dostupné online (anglicky)
biochemsoctrans.org
Prangishvili D., Garrett R. A. Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses. Biochem. Soc. Trans.. 2004, roč. 32, čís. Pt 2, s. 204–8. Dostupné online. DOI10.1042/BST0320204. PMID15046572.
biology-direct.com
WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN1745-6150. DOI10.1186/1745-6150-7-46. (anglicky)
biorxiv.org
FARAG, Ibrahim F.; ZHAO, Rui; BIDDLE, Jennifer F. “Sifarchaeota” a novel Asgard phylum capable of polysaccharide degradation and anaerobic methylotrophy. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-15 [cit. 2021-02-02]. Preprint. Dostupné online. DOI10.1101/2020.10.14.339440. (anglicky)
LIU, Yang; MAKAROVA, Kira S.; HUANG, Wen-Cong; WOLF, Yuri I.; NIKOLSKAYA, Anastasia; ZHANG, Xinxu; CAI, Mingwei. Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-20. Preprint. Dostupné online. DOI10.1101/2020.10.19.343400. (anglicky)
bioscience.org
Albers S. V., van de Vossenberg J. L., Driessen A. J., Konings W. N. Adaptations of the archaeal cell membrane to heat stress. Front. Biosci.. Září 2000, roč. 5, s. D813–20. Dostupné online. PMID10966867.
cshlp.org
cshperspectives.cshlp.org
CAVALIER-SMITH, Thomas. The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harbor Perspectives in Biology [online]. Cold Spring Harbor Laboratory Press, 2014-09-02 [cit. 2021-03-02]. Svazek 6, čís. 9: a016006. Dostupné online. Dostupné také na: [19]. ISSN1943-0264. DOI10.1101/cshperspect.a016006. PMID25183828. (anglicky)
doi.org
dx.doi.org
Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U.S.A.. 1990, roč. 87, čís. 12, s. 4576–9. Dostupné online. DOI10.1073/pnas.87.12.4576. PMID2112744.
Staley J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1899–909. Dostupné online. DOI10.1098/rstb.2006.1914. PMID17062409.
Zuckerkandl E., Pauling L. Molecules as documents of evolutionary history. J. Theor. Biol.. 1965, roč. 8, čís. 2, s. 357–66. DOI10.1016/0022-5193(65)90083-4. PMID5876245.
Woese C., Fox G. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA. 1977, roč. 74, čís. 11, s. 5088–90. Dostupné online. DOI10.1073/pnas.74.11.5088. PMID270744.
DeLong E. F. Everything in moderation: archaea as 'non-extremophiles'. Curr. Opin. Genet. Dev.. 1998, roč. 8, čís. 6, s. 649–54. DOI10.1016/S0959-437X(98)80032-4. PMID9914204.
Theron J., Cloete T.E. Molecular techniques for determining microbial diversity and community structure in natural environments. Crit. Rev. Microbiol.. 2000, roč. 26, čís. 1, s. 37–57. DOI10.1080/10408410091154174. PMID10782339.
SPANG, Anja; MARTIJN, Joran; SAW, Jimmy H., LIND, Anders E.; GUY, Lionel; ETTEMA, Thijs J. G. Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution. S. 1–12. Archaea [online]. 2013. Svazek 2013:202358, s. 1–12. Dostupné online. PDF [2]. DOI10.1155/2013/202358. (anglicky)
Gevers D., Dawyndt P., Vandamme P., et al. Stepping stones towards a new prokaryotic taxonomy. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1911–6. Dostupné online. DOI10.1098/rstb.2006.1915. PMID17062410.
Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont.. Nature. 2002, roč. 417, čís. 6884, s. 27–8. DOI10.1038/417063a. PMID11986665.
Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U.S.A.. 1996, roč. 93, čís. 17, s. 9188–93. Dostupné online. DOI10.1073/pnas.93.17.9188. PMID8799176.
Elkins J. G., Podar M., Graham D. E., et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc. Natl. Acad. Sci. U.S.A.. June 2008, roč. 105, čís. 23, s. 8102–7. Dostupné online. DOI10.1073/pnas.0801980105. PMID18535141.
Brochier-Armanet C., Boussau B., Gribaldo S., Forterre P. Mesophilic crenarchaeota: proposal for a third archaeal phylum, the Thaumarchaeota.. Nature Reviews Microbiology. 2008, roč. 6, s. 245–252. DOI10.1038/nrmicro1852.
NUNOURA, Takuro, et al.. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. S. 3204–3223. Nucleic Acids Research [online]. 15. prosinec 2010. Svazek 39, čís. 8, s. 3204–3223. Dostupné online. DOI10.1093/nar/gkq1228. (anglicky)
KOZUBAL, Mark A.; ROMINE, Margaret; JENNINGS, Ryan deM., JAY ,Zack J.; TRINGE, Susannah G.; RUSCH, Doug B.; BEAM, Jacob P.; McCUE, Lee Ann; INSKEEP, William P. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. The ISME Journal [online]. 15. listopad 2012. Online před tiskem. Dostupné online. PDF [3]. ISSN1751-7370. DOI10.1038/ismej.2012.132. (anglicky)
CASTELLE, Cindy J., et al.. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. S. 690–701. Current Biology [online]. 19. únor 2015. Svazek 25, čís. 6, s. 690–701. Dostupné online. ISSN0960-9822. DOI10.1016/j.cub.2015.01.014. PMID25702576. (anglicky)
GUY, Lionel, et al.. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. S. 1353–1357. The ISME Journal [online]. 13. únor 2014. Svazek 8, čís. 7, s. 1353–1357. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2014.6. PMID24522265. (anglicky)
WILLIAMS, Tom A.; EMBLEY, T. Martin. Archaeal “Dark Matter” and the Origin of Eukaryotes. S. 474–481. Genome Biology and Evolution [online]. 12. únor 2014. Svazek 6, čís. 3, s. 474–481. Dostupné online. Dostupné také na: [4]. ISSN1759-6653. DOI10.1093/gbe/evu031. (anglicky)
RINKE, Christian, et al.. Insights into the phylogeny and coding potential of microbial dark matter. S. 431–437. Nature [online]. 14. červenec 2013. Svazek 499, čís. 7459, s. 431–437. Dostupné online. DOI10.1038/nature12352. PMID23851394. (anglicky)
SPANG, Anja; SAW, Jimmy H.; JØRGENSEN, Steffen L., ZAREMBA-NIEDZWIEDZKA, Katarzyna; MARTIJN, Joran; LIND, Anders E.; van EIJK, Roel; SCHLEPER, Christa; GUY, Lionel; ETTEMA, Thijs J. G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature [online]. 6. květen 2015. Online před tiskem. Dostupné online. ISSN1476-4687. DOI10.1038/nature14447. PMID25945739. (anglicky)
SEITZ, Kiley W.; LAZAR, Cassandre S.; HINRICHS, Kai-Uwe, TESKE, Andreas P.; BAKER, Brett J. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The ISME Journal [online]. 29. leden 2016. Online před tiskem. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2015.233. PMID26824177. (anglicky)
VANWONTERGHEM, Inka; EVANS, Paul N.; PARKS, Donovan H.; JENSEN, Paul D.; WOODCROFT, Ben J.; HUGENHOLTZ, Philip; TYSON, Gene W. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. S. 1–9. Nature Microbiology [online]. 3. říjen 2016 [cit. 2016-11-23]. Svazek 1: 16170, s. 1–9. Dostupné online. PDF [6]. ISSN2058-5276. DOI10.1038/nmicrobiol.2016.170. PMID27694807. (anglicky)
ZAREMBA-NIEDZWIEDZKA, Katarzyna; CACERES, Eva F.; SAW, Jimmy H.; BÄCKSTRÖM, Disa; JUZOKAITE, Lina; VANCAESTER, Emmelien; SEITZ, Kiley W., ANANTHARAMAN, Karthik; STARNAWSKI, Piotr; KJELDSEN, Kasper U.; STOTT, Matthew B.; NUNOURA, Takuro; BANFIELD, Jillian F.; SCHRAMM, Andreas; BAKER, Brett J.; SPANG, Anja; ETTEMA, Thijs J. G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. S. 353–358. Nature [online]. Macmillan Publishers Limited, Springer Nature, 11. leden 2017 [cit. 2017-01-23]. Svazek 541, čís. 7637, s. 353–358. Dostupné online. PDF [7]. ISSN1476-4687. DOI10.1038/nature21031. PMID28077874. (anglicky)
JUNGBLUTH, Sean P.; AMEND, Jan P.; RAPPÉ, Michael S. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids. S. 1–11. Scientific Data [online]. Springer Nature Limited, 28. březen 2017. Svazek 4: 170037, s. 1–11. Dostupné online. PDF [8]. Dále dostupné na: [9]. ISSN2052-4463. DOI10.1038/sdata.2017.37. PMID28350381. (anglicky)
CARR, Stephanie A.; JUNGBLUTH, Sean P.; ELOE-FADROSH, Emiley A.; STEPANAUSKAS, Ramunas; WOYKE, Tanja; RAPPÉ, Michael S.; ORCUTT, Beth N. Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. S. 1457–1468. The ISME Journal [online]. Springer Nature Publishing AG, 7. únor 2019. Svazek 13, čís. 6, s. 1457–1468. Dostupné online. pdf [10]. ISSN1751-7370. DOI10.1038/s41396-019-0352-9. PMID30728468. (anglicky)
JAY, Zackary J.; BEAM, Jacob P.; DLAKIĆ, Mensur; RUSCH, Douglas B.; KOZUBAL, Mark A.; INSKEEP, William P. Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. S. 732–740. Nature Microbiology [online]. Macmillan Publishers Limited, 14. květen 2018 [cit. 2018-05-24]. Svazek 3, s. 732–740. Dostupné online. ISSN2058-5276. DOI10.1038/s41564-018-0163-1. (anglicky)
WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN2058-5276. DOI10.1038/s41564-019-0364-2. PMID30833728. (anglicky)
SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN2041-1723. DOI10.1038/s41467-019-09364-x. PMID31015394. (anglicky)
CAI, Mingwei; LIU, Yang; YIN, Xiuran, et al. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China Life Sciences [online]. Springer Nature Switzerland AG, 16. březen 2020. Svazek 63. Online před tiskem. Dostupné online. Dostupné také na: [14]. ISSN1869-1889. DOI10.1007/s11427-020-1679-1. PMID32201928. (anglicky)
FARAG, Ibrahim F.; ZHAO, Rui; BIDDLE, Jennifer F. “Sifarchaeota” a novel Asgard phylum capable of polysaccharide degradation and anaerobic methylotrophy. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-15 [cit. 2021-02-02]. Preprint. Dostupné online. DOI10.1101/2020.10.14.339440. (anglicky)
LIU, Yang; MAKAROVA, Kira S.; HUANG, Wen-Cong; WOLF, Yuri I.; NIKOLSKAYA, Anastasia; ZHANG, Xinxu; CAI, Mingwei. Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes. bioRχiv [online]. Cold Spring Harbor Laboratory, 2020-10-20. Preprint. Dostupné online. DOI10.1101/2020.10.19.343400. (anglicky)
Eppley J. M., Tyson G. W., Getz W. M., Banfield J. F. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 2007, roč. 177, čís. 1, s. 407–16. Dostupné online. DOI10.1534/genetics.107.072892. PMID17603112.
Papke R. T., Zhaxybayeva O., Feil E. J., Sommerfeld K., Muise D., Doolittle W. .F. Searching for species in haloarchaea. Proc. Natl. Acad. Sci. U.S.A.. 2007, roč. 104, čís. 35, s. 14092–7. Dostupné online. DOI10.1073/pnas.0706358104. PMID17715057.
PETITJEAN, Céline; DESCHAMPS, Philippe; LÓPEZ-GARCÍA, Purificación, MOREIRA, David. Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota. S. 191–204. Genome Biology and Evolution [online]. 19. prosinec 2014. Svazek 7, čís. 1, s. 191–204. Dostupné online. PDF [16]. ISSN1759-6653. DOI10.1093/gbe/evu274. (anglicky)
CUNHA, Violette Da; GAIA, Morgan; GADELLE, Daniele; NASIR, Arshan; FORTERRE, Patrick. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. S. 1–38. PLoS Genetics [online]. 12. červen 2017. Svazek 13, čís. 6: e1006810, s. 1–38. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1006810. PMID28604769. (anglicky)
SPANG, Anja; EME, Laura; SAW, Jimmy H.; CACERES, Eva F.; ZAREMBA-NIEDZWIEDZKA, Katarzyna; LOMBARD, Jonathan; GUY, Lionel, ETTEMA, Thijs J. G. Asgard archaea are the closest prokaryotic relatives of eukaryotes. S. 1–4. PLoS Genetics [online]. 29. březen 2018. Svazek 14, čís. 3: e1007080, s. 1–4. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1007080. PMID29596421. (anglicky)
AOUAD, Monique; TAIB, Najwa; OUDART, Anne; LECOCQ, Michel; GOUY, Manolo; BROCHIER-ARMANET, Céline. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. S. 46–54. Molecular Phylogenetics and Evolution [online]. Elsevier Inc., 21. duben 2018. Svazek 127, s. 46–54. Dostupné online. Dostupné také na: [17]. ISSN1055-7903. DOI10.1016/j.ympev.2018.04.011. (anglicky)
BROCHIER-ARMANET, Celine; FORTERRE, Patrick; GRIBALDO, Simonetta. Phylogeny and evolution of the Archaea: one hundred genomes later. S. 274–281. Current Opinion in Microbiology [online]. 2011. Svazek 14, čís. 3, s. 274–281. Dostupné online. DOI10.1016/j.mib.2011.04.015. (anglicky)
WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN1745-6150. DOI10.1186/1745-6150-7-46. (anglicky)
LASEK-NESSELQUIST, Erica; GOGARTEN, Johann Peter. The effects of model choice and mitigating bias on the ribosomal tree of life. S. 17–38. Molecular Phylogenetics and Evolution [online]. 22. květen 2013. Svazek 69, čís. 1, s. 17–38. Dostupné online. ISSN1055-7903. DOI10.1016/j.ympev.2013.05.006. (anglicky)
CAVALIER-SMITH, Thomas. The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harbor Perspectives in Biology [online]. Cold Spring Harbor Laboratory Press, 2014-09-02 [cit. 2021-03-02]. Svazek 6, čís. 9: a016006. Dostupné online. Dostupné také na: [19]. ISSN1943-0264. DOI10.1101/cshperspect.a016006. PMID25183828. (anglicky)
SPANG, Anja; CACERES, Eva F.; ETTEMA, Thijs J. G. Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life. Science [online]. 11. srpen 2017. Svazek 357, čís. 6351: eaaf3883. Dostupné online. ISSN1095-9203. DOI10.1126/science.aaf3883. (anglicky)
OREN, Aharon; ARAHAL, David R.; GÖKER, Markus; MOORE, Edward R. B.; ROSSELLO-MORA, Ramon; SUTCLIFFE, Iain C. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-05-01 [cit. 2024-01-25]. Roč. 73, čís. 5a. Dostupné online. ISSN1466-5034. DOI10.1099/ijsem.0.005585. PMID37219928. (anglicky)
OREN, Aharon; ARAHAL, David R.; ROSSELLÓ-MÓRA, Ramon; SUTCLIFFE, Iain C.; MOORE, Edward R. B. Emendation of Rules 5b, 8, 15 and 22 of the International Code of Nomenclature of Prokaryotes to include the rank of phylum. International Journal of Systematic and Evolutionary Microbiology [online]. 2021-06-23 [cit. 2024-03-25]. Roč. 71, čís. 6. DOI10.1099/ijsem.0.004851. PMID34161220. (anglicky)
OREN, Aharon. Emendation of Principle 8, Rules 5b, 8, 15, 33a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes to include the categories of kingdom and domain. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-11-01 [cit. 2024-05-28]. Roč. 73, čís. 11. ISSN1466-5034. DOI10.1099/ijsem.0.006123. PMID37909283. (anglicky)
OREN, Aharon; GARRITY, George M. Valid publication of the names of forty-two phyla of prokaryotes. International Journal of Systematic and Evolutionary Microbiology [online]. 2021-10-20 [cit. 2024-03-25]. Roč. 71, čís. 10. DOI10.1099/ijsem.0.005056. PMID34694987. (anglicky)
GÖKER, Markus; OREN, Aharon. Valid publication of four additional phylum names. International Journal of Systematic and Evolutionary Microbiology [online]. 2023-09-11. Roč. 73, čís. 9. DOI10.1099/ijsem.0.006024. (anglicky)
OREN, Aharon; GÖKER, Markus. Candidatus List. Lists of names of prokaryotic Candidatus phyla. International Journal of Systematic and Evolutionary Microbiology [online]. 2023-05-09. Roč. 73, čís. 5. DOI10.1099/ijsem.0.005821. PMID37159402. (anglicky)
GÖKER, Markus; OREN, Aharon. Valid publication of names of two domains and seven kingdoms of prokaryotes. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-01-22 [cit. 2024-05-28]. Roč. 74, čís. 1. DOI10.1099/ijsem.0.006242. (anglicky)
IMACHI, Hiroyuki; NOBU, Masaru K.; KATO, Shingo; TAKAKI, Yoshihiro; MIYAZAKI, Masayuki; MIYATA, Makoto; OGAWARA, Miyuki. Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov.. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-07-05 [cit. 2024-08-14]. Roč. 74, čís. 7. ISSN1466-5034. DOI10.1099/ijsem.0.006435. PMID38967634. (anglicky)
Brocks J. J., Logan G. A., Buick R., Summons R. E. Archean molecular fossils and the early rise of eukaryotes. Science. 1999, roč. 285, čís. 5430, s. 1033–6. DOI10.1126/science.285.5430.1033. PMID10446042.
Wang M., Yafremava L. S., Caetano-Anollés D., Mittenthal J. E., Caetano-Anollés G. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Genome Res.. 2007, roč. 17, čís. 11, s. 1572–85. DOI10.1101/gr.6454307. PMID17908824.
Woese C. R., Gupta R. Are archaebacteria merely derived 'prokaryotes'?. Nature. 1981, roč. 289, čís. 5793, s. 95–6. DOI10.1038/289095a0. PMID6161309.
Gupta R. S. The natural evolutionary relationships among prokaryotes. Crit. Rev. Microbiol.. 2000, roč. 26, čís. 2, s. 111–31. DOI10.1080/10408410091154219. PMID10890353.
Gouy M., Li W. H. Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature. May 1989, roč. 339, čís. 6220, s. 145–7. DOI10.1038/339145a0. PMID2497353.
Nelson K. E., Clayton RA, Gill SR, et al. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature. 1999, roč. 399, čís. 6734, s. 323–9. DOI10.1038/20601. PMID10360571.
RAYMANN, Kasie; BROCHIER-ARMANET, Céline; GRIBALDO, Simonetta. The two-domain tree of life is linked to a new root for the Archaea. S. 6670–6675. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 11. květen 2015 [cit. 2015-05-27]. Svazek 112, čís. 21, s. 6670–6675. Dostupné v archivu pořízeném z originálu dne 2015-05-29. ISSN1091-6490. DOI10.1073/pnas.1420858112. (anglicky)
EME, Laura; SPANG, Anja; LOMBARD, Jonathan; STAIRS, Courtney W.; ETTEMA, Thijs J. G. Archaea and the origin of eukaryotes. S. 711–723. Nature Reviews Microbiology [online]. Springer Nature Limited., 10. listopad 2017, oprava 2017-11-27. Svazek 15, čís. 12, s. 711–723. Dostupné online. Dostupné také na: [20]. ISSN1740-1534. DOI10.1038/nrmicro.2017.133. PMID29123225. (anglicky)
WILLIAMS, Tom A.; SZÖLLŐSI, Gergely J.; SPANG, Anja; FOSTER, Peter G.; HEAPS, Sarah E.; BOUSSAU, Bastien; ETTEMA, Thijs J. G., EMBLEY, T. Martin. Integrative modeling of gene and genome evolution roots the archaeal tree of life. S. E4602-E4611. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 6. červen 2017 [cit. 2018-07-23]. Svazek 114, čís. 23, s. E4602-E4611. Dostupné v archivu pořízeném z originálu dne 2018-07-24. ISSN1091-6490. DOI10.1073/pnas.1618463114. PMID28533395. (anglicky)
Walsby, A. E. A square bacterium. Nature. 1980, roč. 283, čís. 5742, s. 69–71. DOI10.1038/283069a0.
Hixon W. G., Searcy D. G. Cytoskeleton in the archaebacterium Thermoplasma acidophilum? Viscosity increase in soluble extracts. BioSystems. 1993, roč. 29, čís. 2–3, s. 151–60. DOI10.1016/0303-2647(93)90091-P. PMID8374067.
Hall-Stoodley L., Costerton J. W., Stoodley P. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol.. 2004, roč. 2, čís. 2, s. 95–108. DOI10.1038/nrmicro821. PMID15040259.
Nickell S., Hegerl R., Baumeister W., Rachel R. Pyrodictium cannulae enter the periplasmic space but do not enter the cytoplasm, as revealed by cryo-electron tomography. J. Struct. Biol.. 2003, roč. 141, čís. 1, s. 34–42. Dostupné online. DOI10.1016/S1047-8477(02)00581-6. PMID12576018.
Kuwabara T., Minaba M., Iwayama Y., et al. Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount. Int. J. Syst. Evol. Microbiol.. November 2005, roč. 55, čís. Pt 6, s. 2507–14. Dostupné online. DOI10.1099/ijs.0.63432-0. PMID16280518.[nedostupný zdroj]
Thomas N. A., Bardy S. L., Jarrell K. F. The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol. Rev.. 2001, roč. 25, čís. 2, s. 147–74. DOI10.1111/j.1574-6976.2001.tb00575.x. PMID11250034.
Koga Y., Morii H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev.. 2007, roč. 71, čís. 1, s. 97–120. Dostupné online. DOI10.1128/MMBR.00033-06. PMID17347520.
Ng S. Y., Chaban B., Jarrell K. F. Archaeal flagella, bacterial flagella and type IV pili: a comparison of genes and posttranslational modifications. J. Mol. Microbiol. Biotechnol.. 2006, roč. 11, čís. 3–5, s. 167–91. DOI10.1159/000094053. PMID16983194.
Bardy S. L., Ng S. Y., Jarrell K. F. Prokaryotic motility structures. Microbiology (Reading, Engl.). February 2003, roč. 149, čís. Pt 2, s. 295–304. Dostupné online. DOI10.1099/mic.0.25948-0. PMID12624192.
Valentine D. L. Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat. Rev. Microbiol.. 2007, roč. 5, čís. 4, s. 316–23. DOI10.1038/nrmicro1619. PMID17334387.
Klocke M., Nettmann E., Bergmann I, et al. Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass. Syst. Appl. Microbiol.. May 2008. DOI10.1016/j.syapm.2008.02.003. PMID18501543.
Bryant D. A., Frigaard N. U. Prokaryotic photosynthesis and phototrophy illuminated. Trends Microbiol.. November 2006, roč. 14, čís. 11, s. 488–96. DOI10.1016/j.tim.2006.09.001. PMID16997562.
Allers T., Mevarech M. Archaeal genetics - the third way. Nat. Rev. Genet.. 2005, roč. 6, čís. 1, s. 58–73. DOI10.1038/nrg1504. PMID15630422.
Galagan J. E., et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Research. 2002, roč. 12, čís. 4, s. 532–42. Dostupné online. ISSN1088-9051. DOI11932238.
BENNETT, GM.; MORAN, NA. Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a Phloem-feeding insect.. Genome Biol Evol. 2013, roč. 5, čís. 9, s. 1675-88. Dostupné online. DOI10.1093/gbe/evt118. PMID23918810.
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
Aravind L., Koonin E. V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res.. 1999, roč. 27, čís. 23, s. 4658–70. Dostupné online. DOI10.1093/nar/27.23.4658. PMID10556324.
Yoshinari S., Itoh T., Hallam S. J., et al. Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease. Biochem. Biophys. Res. Commun.. August 2006, roč. 346, čís. 3, s. 1024–32. DOI10.1016/j.bbrc.2006.06.011. PMID16781672.
Onyenwoke R. U., Brill J. A., Farahi K., Wiegel J. Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch ( Firmicutes). Arch. Microbiol.. 2004, roč. 182, čís. 2–3, s. 182–92. DOI10.1007/s00203-004-0696-y. PMID15340788.
Kostrikina N. A., Zvyagintseva I. S., Duda V. I. Cytological peculiarities of some extremely halophilic soil archaeobacteria. Arch. Microbiol.. 1991, roč. 156, čís. 5, s. 344–49. Dostupné online. DOI10.1007/BF00248708.
DeLong E. F., Pace N. R. Environmental diversity of bacteria and archaea. Syst. Biol.. 2001, roč. 50, čís. 4, s. 470–8. DOI10.1080/106351501750435040. PMID12116647.
SIMON, H M, J A Dodsworth, R M Goodman. Crenarchaeota colonize terrestrial plant roots. Environmental Microbiology. 2000, roč. 2, čís. 5, s. 495–505. Dostupné online. ISSN1462-2912. DOI11233158.
Karner M. B., DeLong E. F., Karl D. M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature. 2001, roč. 409, čís. 6819, s. 507–10. DOI10.1038/35054051. PMID11206545.
Giovannoni S. J., Stingl U. Molecular diversity and ecology of microbial plankton. Nature. 2005, roč. 427, čís. 7057, s. 343–8. DOI10.1038/nature04158. PMID16163344.
DeLong E. F., Karl D. M. Genomic perspectives in microbial oceanography. Nature. September 2005, roč. 437, čís. 7057, s. 336–42. DOI10.1038/nature04157. PMID16163343.
Pikuta E. V., Hoover R. B., Tang J. Microbial extremophiles at the limits of life. Crit. Rev. Microbiol.. 2007, roč. 33, čís. 3, s. 183–209. DOI10.1080/10408410701451948. PMID17653987.
Takai K, Nakamura K, Toki T, Tsunogai U, Miyazaki M, Miyazaki J, Hirayama H, Nakagawa S, Nunoura T, Horikoshi K. Cell proliferation at 122 °C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation. Proc Natl Acad Sci USA. 2008, roč. 105, s. 10949–54. DOI10.1073/pnas.0712334105.
Teske A., Sørensen K. B. Uncultured archaea in deep marine subsurface sediments: have we caught them all?. ISME J. January 2008, roč. 2, čís. 1, s. 3–18. DOI10.1038/ismej.2007.90. PMID18180743.
Francis C. A., Beman J. M., Kuypers M. M. New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J. May 2007, roč. 1, čís. 1, s. 19–27. DOI10.1038/ismej.2007.8. PMID18043610.
Coolen M. J., Abbas B., van Bleijswijk J., et al. Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ. Microbiol.. April 2007, roč. 9, čís. 4, s. 1001–16. DOI10.1111/j.1462-2920.2006.01227.x. PMID17359272.
Leininger S., Urich T., Schloter M., et al. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature. August 2006, roč. 442, čís. 7104, s. 806–9. DOI10.1038/nature04983. PMID16915287.
Schimel J. Playing scales in the methane cycle: from microbial ecology to the globe. Proc. Natl. Acad. Sci. U.S.A.. August 2004, roč. 101, čís. 34, s. 12400–1. Dostupné online. DOI10.1073/pnas.0405075101. PMID15314221.
Cavicchioli R., Curmi P., Saunders N., Thomas T. Pathogenic archaea: do they exist?. Bioessays. 2003, roč. 25, čís. 11, s. 1119–28. DOI10.1002/bies.10354. PMID14579252.
Lepp P., Brinig M., Ouverney C., Palm K., Armitage G., Relman D. Methanogenic Archaea and human periodontal disease. Proc Natl Acad Sci U S A. 2004, roč. 101, čís. 16, s. 6176–81. DOI10.1073/pnas.0308766101. PMID15067114.
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. October 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
Jahn U., Gallenberger M., Paper W., et al. Nanoarchaeum equitans and Ignicoccus hospitalis: new insights into a unique, intimate association of two archaea. J. Bacteriol.. March 2008, roč. 190, čís. 5, s. 1743–50. Dostupné v archivu pořízeném dne 2020-05-27. DOI10.1128/JB.01731-07. PMID18165302.Archivováno 27. 5. 2020 na Wayback Machine.
Chaban B., Ng S. Y., Jarrell K. F. Archaeal habitats—from the extreme to the ordinary. Can. J. Microbiol.. February 2006, roč. 52, čís. 2, s. 73–116. Dostupné online. DOI10.1139/w05-147. PMID16541146.
Preston, C.M.; Wu, K.Y.; Molinski, T.F.; Delong, E.F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.. Proc Natl Acad Sci USA. 1996, roč. 93, čís. 13, s. 6241–6246. Dostupné online. DOI10.1073/pnas.93.13.6241. PMID8692799.
Eckburg P. B., Bik E. M., Bernstein C. N., et al. Diversity of the human intestinal microbial flora. Science (periodikum). June 2005, roč. 308, čís. 5728, s. 1635–8. Dostupné online. DOI10.1126/science.1110591. PMID15831718.
Samuel B. S., Gordon J. I. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl. Acad. Sci. U.S.A.. June 2006, roč. 103, čís. 26, s. 10011–6. DOI10.1073/pnas.0602187103. PMID16782812.
Chelius M. K., Triplett EW. The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb. Ecol.. April 2001, roč. 41, čís. 3, s. 252–63. Dostupné online. DOI10.1007/s002480000087. PMID11391463.
Prangishvili D., Forterre P., Garrett R. A. Viruses of the Archaea: a unifying view. Nat. Rev. Microbiol.. 2006, roč. 4, čís. 11, s. 837–48. DOI10.1038/nrmicro1527. PMID17041631.
Prangishvili D., Garrett R. A. Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses. Biochem. Soc. Trans.. 2004, roč. 32, čís. Pt 2, s. 204–8. Dostupné online. DOI10.1042/BST0320204. PMID15046572.
Mojica F. J., Díez-Villaseñor C., García-Martínez J., Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol.. 2005, roč. 60, čís. 2, s. 174–82. Dostupné online. DOI10.1007/s00239-004-0046-3. PMID15791728.
Makarova K. S., Grishin N. V., Shabalina S. A., Wolf Y. I., Koonin E. V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct. 2006, roč. 1, s. 7. DOI10.1186/1745-6150-1-7. PMID16545108.
Breithaupt H. The hunt for living gold. The search for organisms in extreme environments yields useful enzymes for industry. EMBO Rep.. 2001, roč. 2, čís. 11, s. 968–71. DOI10.1093/embo-reports/kve238. PMID11713183.
Synowiecki J., Grzybowska B., Zdziebło A. Sources, properties and suitability of new thermostable enzymes in food processing. Crit Rev Food Sci Nutr. 2006, roč. 46, čís. 3, s. 197–205. DOI10.1080/10408690590957296. PMID16527752.
Norris P. R., Burton N. P., Foulis N. A. Acidophiles in bioreactor mineral processing. Extremophiles. 2000, roč. 4, čís. 2, s. 71–6. DOI10.1007/s007920050139. PMID10805560.
O'Connor E. M., Shand R. F. Halocins and sulfolobicins: the emerging story of archaeal protein and peptide antibiotics. J. Ind. Microbiol. Biotechnol.. January 2002, roč. 28, čís. 1, s. 23–31. DOI10.1038/sj/jim/7000190. PMID11938468.
Nickell S., Hegerl R., Baumeister W., Rachel R. Pyrodictium cannulae enter the periplasmic space but do not enter the cytoplasm, as revealed by cryo-electron tomography. J. Struct. Biol.. 2003, roč. 141, čís. 1, s. 34–42. Dostupné online. DOI10.1016/S1047-8477(02)00581-6. PMID12576018.
genetics.org
Eppley J. M., Tyson G. W., Getz W. M., Banfield J. F. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 2007, roč. 177, čís. 1, s. 407–16. Dostupné online. DOI10.1534/genetics.107.072892. PMID17603112.
hindawi.com
hindawi.com
SPANG, Anja; MARTIJN, Joran; SAW, Jimmy H., LIND, Anders E.; GUY, Lionel; ETTEMA, Thijs J. G. Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution. S. 1–12. Archaea [online]. 2013. Svazek 2013:202358, s. 1–12. Dostupné online. PDF [2]. DOI10.1155/2013/202358. (anglicky)
downloads.hindawi.com
SPANG, Anja; MARTIJN, Joran; SAW, Jimmy H., LIND, Anders E.; GUY, Lionel; ETTEMA, Thijs J. G. Close Encounters of the Third Domain: The Emerging Genomic View of Archaeal Diversity and Evolution. S. 1–12. Archaea [online]. 2013. Svazek 2013:202358, s. 1–12. Dostupné online. PDF [2]. DOI10.1155/2013/202358. (anglicky)
horizonpress.com
Sota M.; Top E. M. Plasmids: Current Research and Future Trends. [s.l.]: Caister Academic Press, 2008. Dostupné online. ISBN978-1-904455-35-6. Kapitola Horizontal Gene Transfer Mediated by Plasmids.
jlr.org
Damsté J. S., Schouten S., Hopmans E. C., van Duin A. C., Geenevasen J. A. Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J. Lipid Res.. October 2002, roč. 43, čís. 10, s. 1641–51. Dostupné online. PMID12364548.
nature.com
KOZUBAL, Mark A.; ROMINE, Margaret; JENNINGS, Ryan deM., JAY ,Zack J.; TRINGE, Susannah G.; RUSCH, Doug B.; BEAM, Jacob P.; McCUE, Lee Ann; INSKEEP, William P. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. The ISME Journal [online]. 15. listopad 2012. Online před tiskem. Dostupné online. PDF [3]. ISSN1751-7370. DOI10.1038/ismej.2012.132. (anglicky)
GUY, Lionel, et al.. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. S. 1353–1357. The ISME Journal [online]. 13. únor 2014. Svazek 8, čís. 7, s. 1353–1357. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2014.6. PMID24522265. (anglicky)
RINKE, Christian, et al.. Insights into the phylogeny and coding potential of microbial dark matter. S. 431–437. Nature [online]. 14. červenec 2013. Svazek 499, čís. 7459, s. 431–437. Dostupné online. DOI10.1038/nature12352. PMID23851394. (anglicky)
SPANG, Anja; SAW, Jimmy H.; JØRGENSEN, Steffen L., ZAREMBA-NIEDZWIEDZKA, Katarzyna; MARTIJN, Joran; LIND, Anders E.; van EIJK, Roel; SCHLEPER, Christa; GUY, Lionel; ETTEMA, Thijs J. G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature [online]. 6. květen 2015. Online před tiskem. Dostupné online. ISSN1476-4687. DOI10.1038/nature14447. PMID25945739. (anglicky)
SEITZ, Kiley W.; LAZAR, Cassandre S.; HINRICHS, Kai-Uwe, TESKE, Andreas P.; BAKER, Brett J. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The ISME Journal [online]. 29. leden 2016. Online před tiskem. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2015.233. PMID26824177. (anglicky)
VANWONTERGHEM, Inka; EVANS, Paul N.; PARKS, Donovan H.; JENSEN, Paul D.; WOODCROFT, Ben J.; HUGENHOLTZ, Philip; TYSON, Gene W. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. S. 1–9. Nature Microbiology [online]. 3. říjen 2016 [cit. 2016-11-23]. Svazek 1: 16170, s. 1–9. Dostupné online. PDF [6]. ISSN2058-5276. DOI10.1038/nmicrobiol.2016.170. PMID27694807. (anglicky)
ZAREMBA-NIEDZWIEDZKA, Katarzyna; CACERES, Eva F.; SAW, Jimmy H.; BÄCKSTRÖM, Disa; JUZOKAITE, Lina; VANCAESTER, Emmelien; SEITZ, Kiley W., ANANTHARAMAN, Karthik; STARNAWSKI, Piotr; KJELDSEN, Kasper U.; STOTT, Matthew B.; NUNOURA, Takuro; BANFIELD, Jillian F.; SCHRAMM, Andreas; BAKER, Brett J.; SPANG, Anja; ETTEMA, Thijs J. G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. S. 353–358. Nature [online]. Macmillan Publishers Limited, Springer Nature, 11. leden 2017 [cit. 2017-01-23]. Svazek 541, čís. 7637, s. 353–358. Dostupné online. PDF [7]. ISSN1476-4687. DOI10.1038/nature21031. PMID28077874. (anglicky)
JUNGBLUTH, Sean P.; AMEND, Jan P.; RAPPÉ, Michael S. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids. S. 1–11. Scientific Data [online]. Springer Nature Limited, 28. březen 2017. Svazek 4: 170037, s. 1–11. Dostupné online. PDF [8]. Dále dostupné na: [9]. ISSN2052-4463. DOI10.1038/sdata.2017.37. PMID28350381. (anglicky)
CARR, Stephanie A.; JUNGBLUTH, Sean P.; ELOE-FADROSH, Emiley A.; STEPANAUSKAS, Ramunas; WOYKE, Tanja; RAPPÉ, Michael S.; ORCUTT, Beth N. Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. S. 1457–1468. The ISME Journal [online]. Springer Nature Publishing AG, 7. únor 2019. Svazek 13, čís. 6, s. 1457–1468. Dostupné online. pdf [10]. ISSN1751-7370. DOI10.1038/s41396-019-0352-9. PMID30728468. (anglicky)
JAY, Zackary J.; BEAM, Jacob P.; DLAKIĆ, Mensur; RUSCH, Douglas B.; KOZUBAL, Mark A.; INSKEEP, William P. Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. S. 732–740. Nature Microbiology [online]. Macmillan Publishers Limited, 14. květen 2018 [cit. 2018-05-24]. Svazek 3, s. 732–740. Dostupné online. ISSN2058-5276. DOI10.1038/s41564-018-0163-1. (anglicky)
WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN2058-5276. DOI10.1038/s41564-019-0364-2. PMID30833728. (anglicky)
SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN2041-1723. DOI10.1038/s41467-019-09364-x. PMID31015394. (anglicky)
EME, Laura; SPANG, Anja; LOMBARD, Jonathan; STAIRS, Courtney W.; ETTEMA, Thijs J. G. Archaea and the origin of eukaryotes. S. 711–723. Nature Reviews Microbiology [online]. Springer Nature Limited., 10. listopad 2017, oprava 2017-11-27. Svazek 15, čís. 12, s. 711–723. Dostupné online. Dostupné také na: [20]. ISSN1740-1534. DOI10.1038/nrmicro.2017.133. PMID29123225. (anglicky)
nih.gov
ncbi.nlm.nih.gov
Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U.S.A.. 1990, roč. 87, čís. 12, s. 4576–9. Dostupné online. DOI10.1073/pnas.87.12.4576. PMID2112744.
Staley J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1899–909. Dostupné online. DOI10.1098/rstb.2006.1914. PMID17062409.
Zuckerkandl E., Pauling L. Molecules as documents of evolutionary history. J. Theor. Biol.. 1965, roč. 8, čís. 2, s. 357–66. DOI10.1016/0022-5193(65)90083-4. PMID5876245.
Woese C., Fox G. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA. 1977, roč. 74, čís. 11, s. 5088–90. Dostupné online. DOI10.1073/pnas.74.11.5088. PMID270744.
DeLong E. F. Everything in moderation: archaea as 'non-extremophiles'. Curr. Opin. Genet. Dev.. 1998, roč. 8, čís. 6, s. 649–54. DOI10.1016/S0959-437X(98)80032-4. PMID9914204.
Theron J., Cloete T.E. Molecular techniques for determining microbial diversity and community structure in natural environments. Crit. Rev. Microbiol.. 2000, roč. 26, čís. 1, s. 37–57. DOI10.1080/10408410091154174. PMID10782339.
Gevers D., Dawyndt P., Vandamme P., et al. Stepping stones towards a new prokaryotic taxonomy. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1911–6. Dostupné online. DOI10.1098/rstb.2006.1915. PMID17062410.
Robertson C. E., Harris J. K., Spear J. R., Pace N. R. Phylogenetic diversity and ecology of environmental Archaea. Curr. Opin. Microbiol.. 2005, roč. 8, čís. 6, s. 638–42. PMID16236543.
Huber H., Hohn M. J., Rachel R., Fuchs T., Wimmer V. C., Stetter K. O. A new phylum of Archaea represented by a nanosized hyperthermophilic symbiont.. Nature. 2002, roč. 417, čís. 6884, s. 27–8. DOI10.1038/417063a. PMID11986665.
Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U.S.A.. 1996, roč. 93, čís. 17, s. 9188–93. Dostupné online. DOI10.1073/pnas.93.17.9188. PMID8799176.
Elkins J. G., Podar M., Graham D. E., et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc. Natl. Acad. Sci. U.S.A.. June 2008, roč. 105, čís. 23, s. 8102–7. Dostupné online. DOI10.1073/pnas.0801980105. PMID18535141.
NUNOURA, Takuro, et al.. Insights into the evolution of Archaea and eukaryotic protein modifier systems revealed by the genome of a novel archaeal group. S. 3204–3223. Nucleic Acids Research [online]. 15. prosinec 2010. Svazek 39, čís. 8, s. 3204–3223. Dostupné online. DOI10.1093/nar/gkq1228. (anglicky)
CASTELLE, Cindy J., et al.. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. S. 690–701. Current Biology [online]. 19. únor 2015. Svazek 25, čís. 6, s. 690–701. Dostupné online. ISSN0960-9822. DOI10.1016/j.cub.2015.01.014. PMID25702576. (anglicky)
GUY, Lionel, et al.. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. S. 1353–1357. The ISME Journal [online]. 13. únor 2014. Svazek 8, čís. 7, s. 1353–1357. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2014.6. PMID24522265. (anglicky)
RINKE, Christian, et al.. Insights into the phylogeny and coding potential of microbial dark matter. S. 431–437. Nature [online]. 14. červenec 2013. Svazek 499, čís. 7459, s. 431–437. Dostupné online. DOI10.1038/nature12352. PMID23851394. (anglicky)
SPANG, Anja; SAW, Jimmy H.; JØRGENSEN, Steffen L., ZAREMBA-NIEDZWIEDZKA, Katarzyna; MARTIJN, Joran; LIND, Anders E.; van EIJK, Roel; SCHLEPER, Christa; GUY, Lionel; ETTEMA, Thijs J. G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature [online]. 6. květen 2015. Online před tiskem. Dostupné online. ISSN1476-4687. DOI10.1038/nature14447. PMID25945739. (anglicky)
SEITZ, Kiley W.; LAZAR, Cassandre S.; HINRICHS, Kai-Uwe, TESKE, Andreas P.; BAKER, Brett J. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The ISME Journal [online]. 29. leden 2016. Online před tiskem. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2015.233. PMID26824177. (anglicky)
VANWONTERGHEM, Inka; EVANS, Paul N.; PARKS, Donovan H.; JENSEN, Paul D.; WOODCROFT, Ben J.; HUGENHOLTZ, Philip; TYSON, Gene W. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. S. 1–9. Nature Microbiology [online]. 3. říjen 2016 [cit. 2016-11-23]. Svazek 1: 16170, s. 1–9. Dostupné online. PDF [6]. ISSN2058-5276. DOI10.1038/nmicrobiol.2016.170. PMID27694807. (anglicky)
ZAREMBA-NIEDZWIEDZKA, Katarzyna; CACERES, Eva F.; SAW, Jimmy H.; BÄCKSTRÖM, Disa; JUZOKAITE, Lina; VANCAESTER, Emmelien; SEITZ, Kiley W., ANANTHARAMAN, Karthik; STARNAWSKI, Piotr; KJELDSEN, Kasper U.; STOTT, Matthew B.; NUNOURA, Takuro; BANFIELD, Jillian F.; SCHRAMM, Andreas; BAKER, Brett J.; SPANG, Anja; ETTEMA, Thijs J. G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. S. 353–358. Nature [online]. Macmillan Publishers Limited, Springer Nature, 11. leden 2017 [cit. 2017-01-23]. Svazek 541, čís. 7637, s. 353–358. Dostupné online. PDF [7]. ISSN1476-4687. DOI10.1038/nature21031. PMID28077874. (anglicky)
JUNGBLUTH, Sean P.; AMEND, Jan P.; RAPPÉ, Michael S. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids. S. 1–11. Scientific Data [online]. Springer Nature Limited, 28. březen 2017. Svazek 4: 170037, s. 1–11. Dostupné online. PDF [8]. Dále dostupné na: [9]. ISSN2052-4463. DOI10.1038/sdata.2017.37. PMID28350381. (anglicky)
CARR, Stephanie A.; JUNGBLUTH, Sean P.; ELOE-FADROSH, Emiley A.; STEPANAUSKAS, Ramunas; WOYKE, Tanja; RAPPÉ, Michael S.; ORCUTT, Beth N. Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. S. 1457–1468. The ISME Journal [online]. Springer Nature Publishing AG, 7. únor 2019. Svazek 13, čís. 6, s. 1457–1468. Dostupné online. pdf [10]. ISSN1751-7370. DOI10.1038/s41396-019-0352-9. PMID30728468. (anglicky)
WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN2058-5276. DOI10.1038/s41564-019-0364-2. PMID30833728. (anglicky)
SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN2041-1723. DOI10.1038/s41467-019-09364-x. PMID31015394. (anglicky)
CAI, Mingwei; LIU, Yang; YIN, Xiuran, et al. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China Life Sciences [online]. Springer Nature Switzerland AG, 16. březen 2020. Svazek 63. Online před tiskem. Dostupné online. Dostupné také na: [14]. ISSN1869-1889. DOI10.1007/s11427-020-1679-1. PMID32201928. (anglicky)
Eppley J. M., Tyson G. W., Getz W. M., Banfield J. F. Genetic exchange across a species boundary in the archaeal genus ferroplasma. Genetics. 2007, roč. 177, čís. 1, s. 407–16. Dostupné online. DOI10.1534/genetics.107.072892. PMID17603112.
Papke R. T., Zhaxybayeva O., Feil E. J., Sommerfeld K., Muise D., Doolittle W. .F. Searching for species in haloarchaea. Proc. Natl. Acad. Sci. U.S.A.. 2007, roč. 104, čís. 35, s. 14092–7. Dostupné online. DOI10.1073/pnas.0706358104. PMID17715057.
CUNHA, Violette Da; GAIA, Morgan; GADELLE, Daniele; NASIR, Arshan; FORTERRE, Patrick. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. S. 1–38. PLoS Genetics [online]. 12. červen 2017. Svazek 13, čís. 6: e1006810, s. 1–38. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1006810. PMID28604769. (anglicky)
SPANG, Anja; EME, Laura; SAW, Jimmy H.; CACERES, Eva F.; ZAREMBA-NIEDZWIEDZKA, Katarzyna; LOMBARD, Jonathan; GUY, Lionel, ETTEMA, Thijs J. G. Asgard archaea are the closest prokaryotic relatives of eukaryotes. S. 1–4. PLoS Genetics [online]. 29. březen 2018. Svazek 14, čís. 3: e1007080, s. 1–4. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1007080. PMID29596421. (anglicky)
CAVALIER-SMITH, Thomas. The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harbor Perspectives in Biology [online]. Cold Spring Harbor Laboratory Press, 2014-09-02 [cit. 2021-03-02]. Svazek 6, čís. 9: a016006. Dostupné online. Dostupné také na: [19]. ISSN1943-0264. DOI10.1101/cshperspect.a016006. PMID25183828. (anglicky)
OREN, Aharon; ARAHAL, David R.; GÖKER, Markus; MOORE, Edward R. B.; ROSSELLO-MORA, Ramon; SUTCLIFFE, Iain C. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-05-01 [cit. 2024-01-25]. Roč. 73, čís. 5a. Dostupné online. ISSN1466-5034. DOI10.1099/ijsem.0.005585. PMID37219928. (anglicky)
OREN, Aharon; ARAHAL, David R.; ROSSELLÓ-MÓRA, Ramon; SUTCLIFFE, Iain C.; MOORE, Edward R. B. Emendation of Rules 5b, 8, 15 and 22 of the International Code of Nomenclature of Prokaryotes to include the rank of phylum. International Journal of Systematic and Evolutionary Microbiology [online]. 2021-06-23 [cit. 2024-03-25]. Roč. 71, čís. 6. DOI10.1099/ijsem.0.004851. PMID34161220. (anglicky)
OREN, Aharon. Emendation of Principle 8, Rules 5b, 8, 15, 33a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes to include the categories of kingdom and domain. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-11-01 [cit. 2024-05-28]. Roč. 73, čís. 11. ISSN1466-5034. DOI10.1099/ijsem.0.006123. PMID37909283. (anglicky)
OREN, Aharon; GARRITY, George M. Valid publication of the names of forty-two phyla of prokaryotes. International Journal of Systematic and Evolutionary Microbiology [online]. 2021-10-20 [cit. 2024-03-25]. Roč. 71, čís. 10. DOI10.1099/ijsem.0.005056. PMID34694987. (anglicky)
OREN, Aharon; GÖKER, Markus. Candidatus List. Lists of names of prokaryotic Candidatus phyla. International Journal of Systematic and Evolutionary Microbiology [online]. 2023-05-09. Roč. 73, čís. 5. DOI10.1099/ijsem.0.005821. PMID37159402. (anglicky)
IMACHI, Hiroyuki; NOBU, Masaru K.; KATO, Shingo; TAKAKI, Yoshihiro; MIYAZAKI, Masayuki; MIYATA, Makoto; OGAWARA, Miyuki. Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov.. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-07-05 [cit. 2024-08-14]. Roč. 74, čís. 7. ISSN1466-5034. DOI10.1099/ijsem.0.006435. PMID38967634. (anglicky)
Brocks J. J., Logan G. A., Buick R., Summons R. E. Archean molecular fossils and the early rise of eukaryotes. Science. 1999, roč. 285, čís. 5430, s. 1033–6. DOI10.1126/science.285.5430.1033. PMID10446042.
Wang M., Yafremava L. S., Caetano-Anollés D., Mittenthal J. E., Caetano-Anollés G. Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world. Genome Res.. 2007, roč. 17, čís. 11, s. 1572–85. DOI10.1101/gr.6454307. PMID17908824.
Woese C. R., Gupta R. Are archaebacteria merely derived 'prokaryotes'?. Nature. 1981, roč. 289, čís. 5793, s. 95–6. DOI10.1038/289095a0. PMID6161309.
Gupta R. S. The natural evolutionary relationships among prokaryotes. Crit. Rev. Microbiol.. 2000, roč. 26, čís. 2, s. 111–31. DOI10.1080/10408410091154219. PMID10890353.
Gouy M., Li W. H. Phylogenetic analysis based on rRNA sequences supports the archaebacterial rather than the eocyte tree. Nature. May 1989, roč. 339, čís. 6220, s. 145–7. DOI10.1038/339145a0. PMID2497353.
Woese C. R. There must be a prokaryote somewhere: microbiology's search for itself. Microbiol. Rev.. March 1994, roč. 58, čís. 1, s. 1–9. Dostupné online. PMID8177167.
Nelson K. E., Clayton RA, Gill SR, et al. Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima. Nature. 1999, roč. 399, čís. 6734, s. 323–9. DOI10.1038/20601. PMID10360571.
EME, Laura; SPANG, Anja; LOMBARD, Jonathan; STAIRS, Courtney W.; ETTEMA, Thijs J. G. Archaea and the origin of eukaryotes. S. 711–723. Nature Reviews Microbiology [online]. Springer Nature Limited., 10. listopad 2017, oprava 2017-11-27. Svazek 15, čís. 12, s. 711–723. Dostupné online. Dostupné také na: [20]. ISSN1740-1534. DOI10.1038/nrmicro.2017.133. PMID29123225. (anglicky)
WILLIAMS, Tom A.; SZÖLLŐSI, Gergely J.; SPANG, Anja; FOSTER, Peter G.; HEAPS, Sarah E.; BOUSSAU, Bastien; ETTEMA, Thijs J. G., EMBLEY, T. Martin. Integrative modeling of gene and genome evolution roots the archaeal tree of life. S. E4602-E4611. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 6. červen 2017 [cit. 2018-07-23]. Svazek 114, čís. 23, s. E4602-E4611. Dostupné v archivu pořízeném z originálu dne 2018-07-24. ISSN1091-6490. DOI10.1073/pnas.1618463114. PMID28533395. (anglicky)
Hixon W. G., Searcy D. G. Cytoskeleton in the archaebacterium Thermoplasma acidophilum? Viscosity increase in soluble extracts. BioSystems. 1993, roč. 29, čís. 2–3, s. 151–60. DOI10.1016/0303-2647(93)90091-P. PMID8374067.
Hall-Stoodley L., Costerton J. W., Stoodley P. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol.. 2004, roč. 2, čís. 2, s. 95–108. DOI10.1038/nrmicro821. PMID15040259.
Nickell S., Hegerl R., Baumeister W., Rachel R. Pyrodictium cannulae enter the periplasmic space but do not enter the cytoplasm, as revealed by cryo-electron tomography. J. Struct. Biol.. 2003, roč. 141, čís. 1, s. 34–42. Dostupné online. DOI10.1016/S1047-8477(02)00581-6. PMID12576018.
Kuwabara T., Minaba M., Iwayama Y., et al. Thermococcus coalescens sp. nov., a cell-fusing hyperthermophilic archaeon from Suiyo Seamount. Int. J. Syst. Evol. Microbiol.. November 2005, roč. 55, čís. Pt 6, s. 2507–14. Dostupné online. DOI10.1099/ijs.0.63432-0. PMID16280518.[nedostupný zdroj]
Thomas N. A., Bardy S. L., Jarrell K. F. The archaeal flagellum: a different kind of prokaryotic motility structure. FEMS Microbiol. Rev.. 2001, roč. 25, čís. 2, s. 147–74. DOI10.1111/j.1574-6976.2001.tb00575.x. PMID11250034.
Rachel R., Wyschkony I., Riehl S., Huber H. The ultrastructure of Ignicoccus: evidence for a novel outer membrane and for intracellular vesicle budding in an archaeon. Archaea. March 2002, roč. 1, čís. 1, s. 9–18. Dostupné v archivu pořízeném dne 24-02-2009. PMID15803654.Archivováno 24. 2. 2009 na Wayback Machine.
Koga Y., Morii H. Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations. Microbiol. Mol. Biol. Rev.. 2007, roč. 71, čís. 1, s. 97–120. Dostupné online. DOI10.1128/MMBR.00033-06. PMID17347520.
De Rosa M., Gambacorta A., Gliozzi A. Structure, biosynthesis, and physicochemical properties of archaebacterial lipids. Microbiol. Rev.. 1986, roč. 50, čís. 1, s. 70–80. Dostupné online. PMID3083222.
Albers S. V., van de Vossenberg J. L., Driessen A. J., Konings W. N. Adaptations of the archaeal cell membrane to heat stress. Front. Biosci.. Září 2000, roč. 5, s. D813–20. Dostupné online. PMID10966867.
Damsté J. S., Schouten S., Hopmans E. C., van Duin A. C., Geenevasen J. A. Crenarchaeol: the characteristic core glycerol dibiphytanyl glycerol tetraether membrane lipid of cosmopolitan pelagic crenarchaeota. J. Lipid Res.. October 2002, roč. 43, čís. 10, s. 1641–51. Dostupné online. PMID12364548.
Koga Y., Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Biosci. Biotechnol. Biochem.. November 2005, roč. 69, čís. 11, s. 2019–34. Dostupné v archivu pořízeném dne 31-12-2008. PMID16306681.Archivováno 31. 12. 2008 na Wayback Machine.
Hanford M. J., Peeples T. L. Archaeal tetraether lipids: unique structures and applications. Appl. Biochem. Biotechnol.. January 2002, roč. 97, čís. 1, s. 45–62. PMID11900115.
Macalady J. L., Vestling M. M., Baumler D., Boekelheide N., Kaspar C. W., Banfield J. F. Tetraether-linked membrane monolayers in Ferroplasma spp: a key to survival in acid. Extremophiles. October 2004, roč. 8, čís. 5, s. 411–9. PMID15258835.
Golyshina O. V., Pivovarova T. A., Karavaiko G. I., et al. Ferroplasma acidiphilum gen. nov., sp. nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea. Int. J. Syst. Evol. Microbiol.. May 2000, roč. 50 Pt 3, s. 997–1006. Dostupné online. PMID10843038.
Ng S. Y., Chaban B., Jarrell K. F. Archaeal flagella, bacterial flagella and type IV pili: a comparison of genes and posttranslational modifications. J. Mol. Microbiol. Biotechnol.. 2006, roč. 11, čís. 3–5, s. 167–91. DOI10.1159/000094053. PMID16983194.
Bardy S. L., Ng S. Y., Jarrell K. F. Prokaryotic motility structures. Microbiology (Reading, Engl.). February 2003, roč. 149, čís. Pt 2, s. 295–304. Dostupné online. DOI10.1099/mic.0.25948-0. PMID12624192.
Zillig W. Comparative biochemistry of Archaea and Bacteria. Curr. Opin. Genet. Dev.. December 1991, roč. 1, čís. 4, s. 544–51. PMID1822288.
Valentine D. L. Adaptations to energy stress dictate the ecology and evolution of the Archaea. Nat. Rev. Microbiol.. 2007, roč. 5, čís. 4, s. 316–23. DOI10.1038/nrmicro1619. PMID17334387.
Koch A. How did bacteria come to be?. Adv Microb Physiol. 1998, roč. 40, s. 353–99. PMID9889982.
Klocke M., Nettmann E., Bergmann I, et al. Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass. Syst. Appl. Microbiol.. May 2008. DOI10.1016/j.syapm.2008.02.003. PMID18501543.
Bryant D. A., Frigaard N. U. Prokaryotic photosynthesis and phototrophy illuminated. Trends Microbiol.. November 2006, roč. 14, čís. 11, s. 488–96. DOI10.1016/j.tim.2006.09.001. PMID16997562.
Schäfer G., Engelhard M., Müller V. Bioenergetics of the Archaea. Microbiol. Mol. Biol. Rev.. September 1999, roč. 63, čís. 3, s. 570–620. Dostupné online. PMID10477309.
Allers T., Mevarech M. Archaeal genetics - the third way. Nat. Rev. Genet.. 2005, roč. 6, čís. 1, s. 58–73. DOI10.1038/nrg1504. PMID15630422.
Galagan J. E., et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Research. 2002, roč. 12, čís. 4, s. 532–42. Dostupné online. ISSN1088-9051. DOI11932238.
BENNETT, GM.; MORAN, NA. Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a Phloem-feeding insect.. Genome Biol Evol. 2013, roč. 5, čís. 9, s. 1675-88. Dostupné online. DOI10.1093/gbe/evt118. PMID23918810.
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
Schleper C., Holz I., Janekovic D., Murphy J., Zillig W. A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J. Bacteriol.. 1995, roč. 177, čís. 15, s. 4417–26. Dostupné v archivu pořízeném dne 2012-05-29. PMID7635827.
Aravind L., Koonin E. V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res.. 1999, roč. 27, čís. 23, s. 4658–70. Dostupné online. DOI10.1093/nar/27.23.4658. PMID10556324.
Lykke-Andersen J., Aagaard C., Semionenkov M., Garrett R. A. Archaeal introns: splicing, intercellular mobility and evolution. Trends Biochem. Sci.. September 1997, roč. 22, čís. 9, s. 326–31. PMID9301331.
Watanabe Y., Yokobori S., Inaba T., et al. Introns in protein-coding genes in Archaea. FEBS Lett.. January 2002, roč. 510, čís. 1–2, s. 27–30. PMID11755525.
Yoshinari S., Itoh T., Hallam S. J., et al. Archaeal pre-mRNA splicing: a connection to hetero-oligomeric splicing endonuclease. Biochem. Biophys. Res. Commun.. August 2006, roč. 346, čís. 3, s. 1024–32. DOI10.1016/j.bbrc.2006.06.011. PMID16781672.
Onyenwoke R. U., Brill J. A., Farahi K., Wiegel J. Sporulation genes in members of the low G+C Gram-type-positive phylogenetic branch ( Firmicutes). Arch. Microbiol.. 2004, roč. 182, čís. 2–3, s. 182–92. DOI10.1007/s00203-004-0696-y. PMID15340788.
DeLong E. F., Pace N. R. Environmental diversity of bacteria and archaea. Syst. Biol.. 2001, roč. 50, čís. 4, s. 470–8. DOI10.1080/106351501750435040. PMID12116647.
SIMON, H M, J A Dodsworth, R M Goodman. Crenarchaeota colonize terrestrial plant roots. Environmental Microbiology. 2000, roč. 2, čís. 5, s. 495–505. Dostupné online. ISSN1462-2912. DOI11233158.
Karner M. B., DeLong E. F., Karl D. M. Archaeal dominance in the mesopelagic zone of the Pacific Ocean. Nature. 2001, roč. 409, čís. 6819, s. 507–10. DOI10.1038/35054051. PMID11206545.
Giovannoni S. J., Stingl U. Molecular diversity and ecology of microbial plankton. Nature. 2005, roč. 427, čís. 7057, s. 343–8. DOI10.1038/nature04158. PMID16163344.
DeLong E. F., Karl D. M. Genomic perspectives in microbial oceanography. Nature. September 2005, roč. 437, čís. 7057, s. 336–42. DOI10.1038/nature04157. PMID16163343.
Pikuta E. V., Hoover R. B., Tang J. Microbial extremophiles at the limits of life. Crit. Rev. Microbiol.. 2007, roč. 33, čís. 3, s. 183–209. DOI10.1080/10408410701451948. PMID17653987.
Cowen D. A. The upper temperature of life—where do we draw the line?. Trends Microbiol.. February 2004, roč. 12, čís. 2, s. 58–60. Dostupné online. PMID15040324.
Teske A., Sørensen K. B. Uncultured archaea in deep marine subsurface sediments: have we caught them all?. ISME J. January 2008, roč. 2, čís. 1, s. 3–18. DOI10.1038/ismej.2007.90. PMID18180743.
López-García P., López-López A., Moreira D., Rodríguez-Valera F. Diversity of free-living prokaryotes from a deep-sea site at the Antarctic Polar Front. FEMS Microbiol. Ecol.. July 2001, roč. 36, čís. 2–3, s. 193–202. PMID11451524.
Nealson K. H. Post-Viking microbiology: new approaches, new data, new insights. Orig Life Evol Biosph. January 1999, roč. 29, čís. 1, s. 73–93. Dostupné v archivu pořízeném dne 2020-05-29. PMID11536899.Archivováno 29. 5. 2020 na Wayback Machine.
Davies P. C. The transfer of viable microorganisms between planets. Ciba Found. Symp.. 1996, roč. 202, s. 304–14; discussion 314–7. PMID9243022.
Francis C. A., Beman J. M., Kuypers M. M. New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. ISME J. May 2007, roč. 1, čís. 1, s. 19–27. DOI10.1038/ismej.2007.8. PMID18043610.
Coolen M. J., Abbas B., van Bleijswijk J., et al. Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ. Microbiol.. April 2007, roč. 9, čís. 4, s. 1001–16. DOI10.1111/j.1462-2920.2006.01227.x. PMID17359272.
Leininger S., Urich T., Schloter M., et al. Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature. August 2006, roč. 442, čís. 7104, s. 806–9. DOI10.1038/nature04983. PMID16915287.
Brock T. D., Gustafson J. Ferric iron reduction by sulfur- and iron-oxidizing bacteria. Appl. Environ. Microbiol.. October 1976, roč. 32, čís. 4, s. 567–71. Dostupné online. PMID825043.Archivováno 29. 5. 2020 na Wayback Machine.
Schimel J. Playing scales in the methane cycle: from microbial ecology to the globe. Proc. Natl. Acad. Sci. U.S.A.. August 2004, roč. 101, čís. 34, s. 12400–1. Dostupné online. DOI10.1073/pnas.0405075101. PMID15314221.
Cavicchioli R., Curmi P., Saunders N., Thomas T. Pathogenic archaea: do they exist?. Bioessays. 2003, roč. 25, čís. 11, s. 1119–28. DOI10.1002/bies.10354. PMID14579252.
Lepp P., Brinig M., Ouverney C., Palm K., Armitage G., Relman D. Methanogenic Archaea and human periodontal disease. Proc Natl Acad Sci U S A. 2004, roč. 101, čís. 16, s. 6176–81. DOI10.1073/pnas.0308766101. PMID15067114.
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. October 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
Jahn U., Gallenberger M., Paper W., et al. Nanoarchaeum equitans and Ignicoccus hospitalis: new insights into a unique, intimate association of two archaea. J. Bacteriol.. March 2008, roč. 190, čís. 5, s. 1743–50. Dostupné v archivu pořízeném dne 2020-05-27. DOI10.1128/JB.01731-07. PMID18165302.Archivováno 27. 5. 2020 na Wayback Machine.
Chaban B., Ng S. Y., Jarrell K. F. Archaeal habitats—from the extreme to the ordinary. Can. J. Microbiol.. February 2006, roč. 52, čís. 2, s. 73–116. Dostupné online. DOI10.1139/w05-147. PMID16541146.
Schink B. Energetics of syntrophic cooperation in methanogenic degradation. Microbiol. Mol. Biol. Rev.. June 1997, roč. 61, čís. 2, s. 262–80. Dostupné online. PMID9184013.
van Hoek A. H., van Alen T. A., Sprakel V. S., et al. Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates. Mol. Biol. Evol.. February 2000, roč. 17, čís. 2, s. 251–8. Dostupné online. PMID10677847.
Preston, C.M.; Wu, K.Y.; Molinski, T.F.; Delong, E.F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.. Proc Natl Acad Sci USA. 1996, roč. 93, čís. 13, s. 6241–6246. Dostupné online. DOI10.1073/pnas.93.13.6241. PMID8692799.
Eckburg P. B., Bik E. M., Bernstein C. N., et al. Diversity of the human intestinal microbial flora. Science (periodikum). June 2005, roč. 308, čís. 5728, s. 1635–8. Dostupné online. DOI10.1126/science.1110591. PMID15831718.
Samuel B. S., Gordon J. I. A humanized gnotobiotic mouse model of host-archaeal-bacterial mutualism. Proc. Natl. Acad. Sci. U.S.A.. June 2006, roč. 103, čís. 26, s. 10011–6. DOI10.1073/pnas.0602187103. PMID16782812.
Chelius M. K., Triplett EW. The Diversity of Archaea and Bacteria in Association with the Roots of Zea mays L. Microb. Ecol.. April 2001, roč. 41, čís. 3, s. 252–63. Dostupné online. DOI10.1007/s002480000087. PMID11391463.
Simon H. M., Dodsworth J. A., Goodman R. M. Crenarchaeota colonize terrestrial plant roots. Environ. Microbiol.. October 2000, roč. 2, čís. 5, s. 495–505. PMID11233158.
Prangishvili D., Forterre P., Garrett R. A. Viruses of the Archaea: a unifying view. Nat. Rev. Microbiol.. 2006, roč. 4, čís. 11, s. 837–48. DOI10.1038/nrmicro1527. PMID17041631.
Prangishvili D., Garrett R. A. Exceptionally diverse morphotypes and genomes of crenarchaeal hyperthermophilic viruses. Biochem. Soc. Trans.. 2004, roč. 32, čís. Pt 2, s. 204–8. Dostupné online. DOI10.1042/BST0320204. PMID15046572.
Mojica F. J., Díez-Villaseñor C., García-Martínez J., Soria E. Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. J. Mol. Evol.. 2005, roč. 60, čís. 2, s. 174–82. Dostupné online. DOI10.1007/s00239-004-0046-3. PMID15791728.
Makarova K. S., Grishin N. V., Shabalina S. A., Wolf Y. I., Koonin E. V. A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. Biol. Direct. 2006, roč. 1, s. 7. DOI10.1186/1745-6150-1-7. PMID16545108.
Breithaupt H. The hunt for living gold. The search for organisms in extreme environments yields useful enzymes for industry. EMBO Rep.. 2001, roč. 2, čís. 11, s. 968–71. DOI10.1093/embo-reports/kve238. PMID11713183.
Egorova K., Antranikian G. Industrial relevance of thermophilic Archaea. Curr. Opin. Microbiol.. 2005, roč. 8, čís. 6, s. 649–55. PMID16257257.
Synowiecki J., Grzybowska B., Zdziebło A. Sources, properties and suitability of new thermostable enzymes in food processing. Crit Rev Food Sci Nutr. 2006, roč. 46, čís. 3, s. 197–205. DOI10.1080/10408690590957296. PMID16527752.
Schiraldi C., Giuliano M., De Rosa M. Perspectives on biotechnological applications of archaea. Archaea. 2002, roč. 1, čís. 2, s. 75–86. Dostupné online. PMID15803645.[nedostupný zdroj]
Norris P. R., Burton N. P., Foulis N. A. Acidophiles in bioreactor mineral processing. Extremophiles. 2000, roč. 4, čís. 2, s. 71–6. DOI10.1007/s007920050139. PMID10805560.
O'Connor E. M., Shand R. F. Halocins and sulfolobicins: the emerging story of archaeal protein and peptide antibiotics. J. Ind. Microbiol. Biotechnol.. January 2002, roč. 28, čís. 1, s. 23–31. DOI10.1038/sj/jim/7000190. PMID11938468.
pubmedcentral.nih.gov
Woese C., Fox G. Phylogenetic structure of the prokaryotic domain: the primary kingdoms. Proc Natl Acad Sci USA. 1977, roč. 74, čís. 11, s. 5088–90. Dostupné online. DOI10.1073/pnas.74.11.5088. PMID270744.
Schink B. Energetics of syntrophic cooperation in methanogenic degradation. Microbiol. Mol. Biol. Rev.. June 1997, roč. 61, čís. 2, s. 262–80. Dostupné online. PMID9184013.
Preston, C.M.; Wu, K.Y.; Molinski, T.F.; Delong, E.F. A psychrophilic crenarchaeon inhabits a marine sponge: Cenarchaeum symbiosum gen. nov., sp. nov.. Proc Natl Acad Sci USA. 1996, roč. 93, čís. 13, s. 6241–6246. Dostupné online. DOI10.1073/pnas.93.13.6241. PMID8692799.
Eckburg P. B., Bik E. M., Bernstein C. N., et al. Diversity of the human intestinal microbial flora. Science (periodikum). June 2005, roč. 308, čís. 5728, s. 1635–8. Dostupné online. DOI10.1126/science.1110591. PMID15831718.
MIHULKA, Stanislav. Eukaryotní buňky pocházejí z Ásgardu. Osel.cz [online]. 22.01.2017 [cit. 2017-01-23]. Dostupné online.
oxfordjournals.org
gbe.oxfordjournals.org
WILLIAMS, Tom A.; EMBLEY, T. Martin. Archaeal “Dark Matter” and the Origin of Eukaryotes. S. 474–481. Genome Biology and Evolution [online]. 12. únor 2014. Svazek 6, čís. 3, s. 474–481. Dostupné online. Dostupné také na: [4]. ISSN1759-6653. DOI10.1093/gbe/evu031. (anglicky)
PETITJEAN, Céline; DESCHAMPS, Philippe; LÓPEZ-GARCÍA, Purificación, MOREIRA, David. Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota. S. 191–204. Genome Biology and Evolution [online]. 19. prosinec 2014. Svazek 7, čís. 1, s. 191–204. Dostupné online. PDF [16]. ISSN1759-6653. DOI10.1093/gbe/evu274. (anglicky)
nar.oxfordjournals.org
Aravind L., Koonin E. V. DNA-binding proteins and evolution of transcription regulation in the archaea. Nucleic Acids Res.. 1999, roč. 27, čís. 23, s. 4658–70. Dostupné online. DOI10.1093/nar/27.23.4658. PMID10556324.
mbe.oxfordjournals.org
van Hoek A. H., van Alen T. A., Sprakel V. S., et al. Multiple acquisition of methanogenic archaeal symbionts by anaerobic ciliates. Mol. Biol. Evol.. February 2000, roč. 17, čís. 2, s. 251–8. Dostupné online. PMID10677847.
phys.org
BOSWELL, Evelyn. Scientists' discovery in Yellowstone 'extremely relevant' to origin of life. Phys.Org [online]. 15. květen 2018 [cit. 2018-05-24]. Dostupné online. (anglicky)
Science China Press. Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Phys.Org [online]. Science X Network, 11. květen 2020. Dostupné online. (anglicky)
Looking for the last universal common ancestor of all living organisms. phys.org [online]. [cit. 2023-11-21]. Dostupné online.
plos.org
journals.plos.org
CUNHA, Violette Da; GAIA, Morgan; GADELLE, Daniele; NASIR, Arshan; FORTERRE, Patrick. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. S. 1–38. PLoS Genetics [online]. 12. červen 2017. Svazek 13, čís. 6: e1006810, s. 1–38. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1006810. PMID28604769. (anglicky)
SPANG, Anja; EME, Laura; SAW, Jimmy H.; CACERES, Eva F.; ZAREMBA-NIEDZWIEDZKA, Katarzyna; LOMBARD, Jonathan; GUY, Lionel, ETTEMA, Thijs J. G. Asgard archaea are the closest prokaryotic relatives of eukaryotes. S. 1–4. PLoS Genetics [online]. 29. březen 2018. Svazek 14, čís. 3: e1007080, s. 1–4. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1007080. PMID29596421. (anglicky)
pnas.org
Woese C. R., Kandler O., Wheelis M. L. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc. Natl. Acad. Sci. U.S.A.. 1990, roč. 87, čís. 12, s. 4576–9. Dostupné online. DOI10.1073/pnas.87.12.4576. PMID2112744.
Barns S. M., Delwiche C. F., Palmer J. D., Pace N. R. Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc. Natl. Acad. Sci. U.S.A.. 1996, roč. 93, čís. 17, s. 9188–93. Dostupné online. DOI10.1073/pnas.93.17.9188. PMID8799176.
Elkins J. G., Podar M., Graham D. E., et al. A korarchaeal genome reveals insights into the evolution of the Archaea. Proc. Natl. Acad. Sci. U.S.A.. June 2008, roč. 105, čís. 23, s. 8102–7. Dostupné online. DOI10.1073/pnas.0801980105. PMID18535141.
Papke R. T., Zhaxybayeva O., Feil E. J., Sommerfeld K., Muise D., Doolittle W. .F. Searching for species in haloarchaea. Proc. Natl. Acad. Sci. U.S.A.. 2007, roč. 104, čís. 35, s. 14092–7. Dostupné online. DOI10.1073/pnas.0706358104. PMID17715057.
RAYMANN, Kasie; BROCHIER-ARMANET, Céline; GRIBALDO, Simonetta. The two-domain tree of life is linked to a new root for the Archaea. S. 6670–6675. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 11. květen 2015 [cit. 2015-05-27]. Svazek 112, čís. 21, s. 6670–6675. Dostupné v archivu pořízeném z originálu dne 2015-05-29. ISSN1091-6490. DOI10.1073/pnas.1420858112. (anglicky)
WILLIAMS, Tom A.; SZÖLLŐSI, Gergely J.; SPANG, Anja; FOSTER, Peter G.; HEAPS, Sarah E.; BOUSSAU, Bastien; ETTEMA, Thijs J. G., EMBLEY, T. Martin. Integrative modeling of gene and genome evolution roots the archaeal tree of life. S. E4602-E4611. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 6. červen 2017 [cit. 2018-07-23]. Svazek 114, čís. 23, s. E4602-E4611. Dostupné v archivu pořízeném z originálu dne 2018-07-24. ISSN1091-6490. DOI10.1073/pnas.1618463114. PMID28533395. (anglicky)
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
Schimel J. Playing scales in the methane cycle: from microbial ecology to the globe. Proc. Natl. Acad. Sci. U.S.A.. August 2004, roč. 101, čís. 34, s. 12400–1. Dostupné online. DOI10.1073/pnas.0405075101. PMID15314221.
Waters E., Hohn M. J., Ahel I., et al. The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism. Proc. Natl. Acad. Sci. U.S.A.. October 2003, roč. 100, čís. 22, s. 12984–8. Dostupné online. DOI10.1073/pnas.1735403100. PMID14566062.
researchgate.net
WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN2058-5276. DOI10.1038/s41564-019-0364-2. PMID30833728. (anglicky)
SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN2041-1723. DOI10.1038/s41467-019-09364-x. PMID31015394. (anglicky)
AOUAD, Monique; TAIB, Najwa; OUDART, Anne; LECOCQ, Michel; GOUY, Manolo; BROCHIER-ARMANET, Céline. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. S. 46–54. Molecular Phylogenetics and Evolution [online]. Elsevier Inc., 21. duben 2018. Svazek 127, s. 46–54. Dostupné online. Dostupné také na: [17]. ISSN1055-7903. DOI10.1016/j.ympev.2018.04.011. (anglicky)
OREN, Aharon; ARAHAL, David R.; GÖKER, Markus; MOORE, Edward R. B.; ROSSELLO-MORA, Ramon; SUTCLIFFE, Iain C. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-05-01 [cit. 2024-01-25]. Roč. 73, čís. 5a. Dostupné online. ISSN1466-5034. DOI10.1099/ijsem.0.005585. PMID37219928. (anglicky)
EME, Laura; SPANG, Anja; LOMBARD, Jonathan; STAIRS, Courtney W.; ETTEMA, Thijs J. G. Archaea and the origin of eukaryotes. S. 711–723. Nature Reviews Microbiology [online]. Springer Nature Limited., 10. listopad 2017, oprava 2017-11-27. Svazek 15, čís. 12, s. 711–723. Dostupné online. Dostupné také na: [20]. ISSN1740-1534. DOI10.1038/nrmicro.2017.133. PMID29123225. (anglicky)
Golyshina O. V., Pivovarova T. A., Karavaiko G. I., et al. Ferroplasma acidiphilum gen. nov., sp. nov., an acidophilic, autotrophic, ferrous-iron-oxidizing, cell-wall-lacking, mesophilic member of the Ferroplasmaceae fam. nov., comprising a distinct lineage of the Archaea. Int. J. Syst. Evol. Microbiol.. May 2000, roč. 50 Pt 3, s. 997–1006. Dostupné online. PMID10843038.
royalsociety.org
journals.royalsociety.org
Staley J. T. The bacterial species dilemma and the genomic-phylogenetic species concept. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1899–909. Dostupné online. DOI10.1098/rstb.2006.1914. PMID17062409.
Gevers D., Dawyndt P., Vandamme P., et al. Stepping stones towards a new prokaryotic taxonomy. Philos. Trans. R. Soc. Lond., B, Biol. Sci.. 2006, roč. 361, čís. 1475, s. 1911–6. Dostupné online. DOI10.1098/rstb.2006.1915. PMID17062410.
scichina.com
engine.scichina.com
CAI, Mingwei; LIU, Yang; YIN, Xiuran, et al. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China Life Sciences [online]. Springer Nature Switzerland AG, 16. březen 2020. Svazek 63. Online před tiskem. Dostupné online. Dostupné také na: [14]. ISSN1869-1889. DOI10.1007/s11427-020-1679-1. PMID32201928. (anglicky)
sciencedirect.com
CASTELLE, Cindy J., et al.. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. S. 690–701. Current Biology [online]. 19. únor 2015. Svazek 25, čís. 6, s. 690–701. Dostupné online. ISSN0960-9822. DOI10.1016/j.cub.2015.01.014. PMID25702576. (anglicky)
AOUAD, Monique; TAIB, Najwa; OUDART, Anne; LECOCQ, Michel; GOUY, Manolo; BROCHIER-ARMANET, Céline. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. S. 46–54. Molecular Phylogenetics and Evolution [online]. Elsevier Inc., 21. duben 2018. Svazek 127, s. 46–54. Dostupné online. Dostupné také na: [17]. ISSN1055-7903. DOI10.1016/j.ympev.2018.04.011. (anglicky)
BROCHIER-ARMANET, Celine; FORTERRE, Patrick; GRIBALDO, Simonetta. Phylogeny and evolution of the Archaea: one hundred genomes later. S. 274–281. Current Opinion in Microbiology [online]. 2011. Svazek 14, čís. 3, s. 274–281. Dostupné online. DOI10.1016/j.mib.2011.04.015. (anglicky)
LASEK-NESSELQUIST, Erica; GOGARTEN, Johann Peter. The effects of model choice and mitigating bias on the ribosomal tree of life. S. 17–38. Molecular Phylogenetics and Evolution [online]. 22. květen 2013. Svazek 69, čís. 1, s. 17–38. Dostupné online. ISSN1055-7903. DOI10.1016/j.ympev.2013.05.006. (anglicky)
sciencemag.org
science.sciencemag.org
SPANG, Anja; CACERES, Eva F.; ETTEMA, Thijs J. G. Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life. Science [online]. 11. srpen 2017. Svazek 357, čís. 6351: eaaf3883. Dostupné online. ISSN1095-9203. DOI10.1126/science.aaf3883. (anglicky)
seqco.de
registry.seqco.de
The Code of Nomenclature of Prokaryotes Described from Sequence Data [online]. Příprava vydání William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Philip Hugenholtz, Kostas T. Konstantinidis, Alison E. Murray, Marike Palmer, Donovan H. Parks, Alexander J. Probst, Anna-Louise Reysenbach, Luis M. Rodriguez-R., Ramon Rossello-Mora, Iain Sutcliffe, Stephanus N. Venter. Version 1.0.3. vyd. Rev. 2023-01-05 [cit. 2024-09-18]. Dostupné online. (anglicky)
Bardy S. L., Ng S. Y., Jarrell K. F. Prokaryotic motility structures. Microbiology (Reading, Engl.). February 2003, roč. 149, čís. Pt 2, s. 295–304. Dostupné online. DOI10.1099/mic.0.25948-0. PMID12624192.
NRC Institute for Biological Sciences. Bacterial Culture Facility - Current Activities [online]. 2007 [cit. 2008-08-25]. Dostupné v archivu pořízeném dne 28-12-2005. Dostupné také na: [1].
WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN1745-6150. DOI10.1186/1745-6150-7-46. (anglicky)
RAYMANN, Kasie; BROCHIER-ARMANET, Céline; GRIBALDO, Simonetta. The two-domain tree of life is linked to a new root for the Archaea. S. 6670–6675. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 11. květen 2015 [cit. 2015-05-27]. Svazek 112, čís. 21, s. 6670–6675. Dostupné v archivu pořízeném z originálu dne 2015-05-29. ISSN1091-6490. DOI10.1073/pnas.1420858112. (anglicky)
WILLIAMS, Tom A.; SZÖLLŐSI, Gergely J.; SPANG, Anja; FOSTER, Peter G.; HEAPS, Sarah E.; BOUSSAU, Bastien; ETTEMA, Thijs J. G., EMBLEY, T. Martin. Integrative modeling of gene and genome evolution roots the archaeal tree of life. S. E4602-E4611. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 6. červen 2017 [cit. 2018-07-23]. Svazek 114, čís. 23, s. E4602-E4611. Dostupné v archivu pořízeném z originálu dne 2018-07-24. ISSN1091-6490. DOI10.1073/pnas.1618463114. PMID28533395. (anglicky)
Barns, Sue and Burggraf, Siegfried. Crenarchaeota, The Tree of Life Web Project [online]. 1997 [cit. 2008-07-28]. Dostupné v archivu pořízeném dne 2012-05-02.
Rachel R., Wyschkony I., Riehl S., Huber H. The ultrastructure of Ignicoccus: evidence for a novel outer membrane and for intracellular vesicle budding in an archaeon. Archaea. March 2002, roč. 1, čís. 1, s. 9–18. Dostupné v archivu pořízeném dne 24-02-2009. PMID15803654.Archivováno 24. 2. 2009 na Wayback Machine.
Koga Y., Morii H. Recent advances in structural research on ether lipids from archaea including comparative and physiological aspects. Biosci. Biotechnol. Biochem.. November 2005, roč. 69, čís. 11, s. 2019–34. Dostupné v archivu pořízeném dne 31-12-2008. PMID16306681.Archivováno 31. 12. 2008 na Wayback Machine.
Nealson K. H. Post-Viking microbiology: new approaches, new data, new insights. Orig Life Evol Biosph. January 1999, roč. 29, čís. 1, s. 73–93. Dostupné v archivu pořízeném dne 2020-05-29. PMID11536899.Archivováno 29. 5. 2020 na Wayback Machine.
Brock T. D., Gustafson J. Ferric iron reduction by sulfur- and iron-oxidizing bacteria. Appl. Environ. Microbiol.. October 1976, roč. 32, čís. 4, s. 567–71. Dostupné online. PMID825043.Archivováno 29. 5. 2020 na Wayback Machine.
EDGAR 3.2 Fast Track 2000 [online]. [cit. 2008-06-26]. Dostupné v archivu pořízeném dne 2008-05-21.
Jahn U., Gallenberger M., Paper W., et al. Nanoarchaeum equitans and Ignicoccus hospitalis: new insights into a unique, intimate association of two archaea. J. Bacteriol.. March 2008, roč. 190, čís. 5, s. 1743–50. Dostupné v archivu pořízeném dne 2020-05-27. DOI10.1128/JB.01731-07. PMID18165302.Archivováno 27. 5. 2020 na Wayback Machine.
Wegley, L.; Yu, Y.; Breitbart, M.; Casas, V.; Kline, D.I.; Rohwer, F. Coral-associated Archaea. Marine Ecology Progress Series. 2004, roč. 273, s. 89–96. Dostupné v archivu pořízeném dne 11-09-2008.Archivováno 11. 9. 2008 na Wayback Machine.
Archivovaná kopie. www.thewhitegoddess.co.uk [online]. [cit. 2020-05-12]. Dostupné v archivu pořízeném z originálu dne 2020-05-14.
worldcat.org
KOZUBAL, Mark A.; ROMINE, Margaret; JENNINGS, Ryan deM., JAY ,Zack J.; TRINGE, Susannah G.; RUSCH, Doug B.; BEAM, Jacob P.; McCUE, Lee Ann; INSKEEP, William P. Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park. The ISME Journal [online]. 15. listopad 2012. Online před tiskem. Dostupné online. PDF [3]. ISSN1751-7370. DOI10.1038/ismej.2012.132. (anglicky)
CASTELLE, Cindy J., et al.. Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling. S. 690–701. Current Biology [online]. 19. únor 2015. Svazek 25, čís. 6, s. 690–701. Dostupné online. ISSN0960-9822. DOI10.1016/j.cub.2015.01.014. PMID25702576. (anglicky)
GUY, Lionel, et al.. 'Geoarchaeote NAG1' is a deeply rooting lineage of the archaeal order Thermoproteales rather than a new phylum. S. 1353–1357. The ISME Journal [online]. 13. únor 2014. Svazek 8, čís. 7, s. 1353–1357. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2014.6. PMID24522265. (anglicky)
WILLIAMS, Tom A.; EMBLEY, T. Martin. Archaeal “Dark Matter” and the Origin of Eukaryotes. S. 474–481. Genome Biology and Evolution [online]. 12. únor 2014. Svazek 6, čís. 3, s. 474–481. Dostupné online. Dostupné také na: [4]. ISSN1759-6653. DOI10.1093/gbe/evu031. (anglicky)
SPANG, Anja; SAW, Jimmy H.; JØRGENSEN, Steffen L., ZAREMBA-NIEDZWIEDZKA, Katarzyna; MARTIJN, Joran; LIND, Anders E.; van EIJK, Roel; SCHLEPER, Christa; GUY, Lionel; ETTEMA, Thijs J. G. Complex archaea that bridge the gap between prokaryotes and eukaryotes. Nature [online]. 6. květen 2015. Online před tiskem. Dostupné online. ISSN1476-4687. DOI10.1038/nature14447. PMID25945739. (anglicky)
SEITZ, Kiley W.; LAZAR, Cassandre S.; HINRICHS, Kai-Uwe, TESKE, Andreas P.; BAKER, Brett J. Genomic reconstruction of a novel, deeply branched sediment archaeal phylum with pathways for acetogenesis and sulfur reduction. The ISME Journal [online]. 29. leden 2016. Online před tiskem. Dostupné online. ISSN1751-7370. DOI10.1038/ismej.2015.233. PMID26824177. (anglicky)
VANWONTERGHEM, Inka; EVANS, Paul N.; PARKS, Donovan H.; JENSEN, Paul D.; WOODCROFT, Ben J.; HUGENHOLTZ, Philip; TYSON, Gene W. Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota. S. 1–9. Nature Microbiology [online]. 3. říjen 2016 [cit. 2016-11-23]. Svazek 1: 16170, s. 1–9. Dostupné online. PDF [6]. ISSN2058-5276. DOI10.1038/nmicrobiol.2016.170. PMID27694807. (anglicky)
ZAREMBA-NIEDZWIEDZKA, Katarzyna; CACERES, Eva F.; SAW, Jimmy H.; BÄCKSTRÖM, Disa; JUZOKAITE, Lina; VANCAESTER, Emmelien; SEITZ, Kiley W., ANANTHARAMAN, Karthik; STARNAWSKI, Piotr; KJELDSEN, Kasper U.; STOTT, Matthew B.; NUNOURA, Takuro; BANFIELD, Jillian F.; SCHRAMM, Andreas; BAKER, Brett J.; SPANG, Anja; ETTEMA, Thijs J. G. Asgard archaea illuminate the origin of eukaryotic cellular complexity. S. 353–358. Nature [online]. Macmillan Publishers Limited, Springer Nature, 11. leden 2017 [cit. 2017-01-23]. Svazek 541, čís. 7637, s. 353–358. Dostupné online. PDF [7]. ISSN1476-4687. DOI10.1038/nature21031. PMID28077874. (anglicky)
JUNGBLUTH, Sean P.; AMEND, Jan P.; RAPPÉ, Michael S. Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids. S. 1–11. Scientific Data [online]. Springer Nature Limited, 28. březen 2017. Svazek 4: 170037, s. 1–11. Dostupné online. PDF [8]. Dále dostupné na: [9]. ISSN2052-4463. DOI10.1038/sdata.2017.37. PMID28350381. (anglicky)
CARR, Stephanie A.; JUNGBLUTH, Sean P.; ELOE-FADROSH, Emiley A.; STEPANAUSKAS, Ramunas; WOYKE, Tanja; RAPPÉ, Michael S.; ORCUTT, Beth N. Carboxydotrophy potential of uncultivated Hydrothermarchaeota from the subseafloor crustal biosphere. S. 1457–1468. The ISME Journal [online]. Springer Nature Publishing AG, 7. únor 2019. Svazek 13, čís. 6, s. 1457–1468. Dostupné online. pdf [10]. ISSN1751-7370. DOI10.1038/s41396-019-0352-9. PMID30728468. (anglicky)
JAY, Zackary J.; BEAM, Jacob P.; DLAKIĆ, Mensur; RUSCH, Douglas B.; KOZUBAL, Mark A.; INSKEEP, William P. Marsarchaeota are an aerobic archaeal lineage abundant in geothermal iron oxide microbial mats. S. 732–740. Nature Microbiology [online]. Macmillan Publishers Limited, 14. květen 2018 [cit. 2018-05-24]. Svazek 3, s. 732–740. Dostupné online. ISSN2058-5276. DOI10.1038/s41564-018-0163-1. (anglicky)
WANG, Yinzhao; WEGENER, Gunter; HOU, Jialin; WANG, Fengping; XIAO, Xiang. Expanding anaerobic alkane metabolism in the domain of Archaea. S. 595–602. Nature Microbiology [online]. 4. březen 2019. Svazek 4, s. 595–602. Dostupné online. Dostupné také na: [11]. ISSN2058-5276. DOI10.1038/s41564-019-0364-2. PMID30833728. (anglicky)
SEITZ, Kiley W.; DOMBROWSKI, Nina; EME, Laura; SPANG, Anja; LOMBARD, Jonathan; SIEBER, Jessica R.; TESKE, Andreas P., ETTEMA, Thijs J. G.; BAKER, Brett J. Asgard archaea capable of anaerobic hydrocarbon cycling. S. 1–11. Nature Communications [online]. 23. duben 2019. Svazek 10: 1822, s. 1–11. Dostupné online. Dostupné také na: [12]. Dále dostupné na: [13]. ISSN2041-1723. DOI10.1038/s41467-019-09364-x. PMID31015394. (anglicky)
CAI, Mingwei; LIU, Yang; YIN, Xiuran, et al. Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation. Science China Life Sciences [online]. Springer Nature Switzerland AG, 16. březen 2020. Svazek 63. Online před tiskem. Dostupné online. Dostupné také na: [14]. ISSN1869-1889. DOI10.1007/s11427-020-1679-1. PMID32201928. (anglicky)
PETITJEAN, Céline; DESCHAMPS, Philippe; LÓPEZ-GARCÍA, Purificación, MOREIRA, David. Rooting the Domain Archaea by Phylogenomic Analysis Supports the Foundation of the New Kingdom Proteoarchaeota. S. 191–204. Genome Biology and Evolution [online]. 19. prosinec 2014. Svazek 7, čís. 1, s. 191–204. Dostupné online. PDF [16]. ISSN1759-6653. DOI10.1093/gbe/evu274. (anglicky)
CUNHA, Violette Da; GAIA, Morgan; GADELLE, Daniele; NASIR, Arshan; FORTERRE, Patrick. Lokiarchaea are close relatives of Euryarchaeota, not bridging the gap between prokaryotes and eukaryotes. S. 1–38. PLoS Genetics [online]. 12. červen 2017. Svazek 13, čís. 6: e1006810, s. 1–38. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1006810. PMID28604769. (anglicky)
SPANG, Anja; EME, Laura; SAW, Jimmy H.; CACERES, Eva F.; ZAREMBA-NIEDZWIEDZKA, Katarzyna; LOMBARD, Jonathan; GUY, Lionel, ETTEMA, Thijs J. G. Asgard archaea are the closest prokaryotic relatives of eukaryotes. S. 1–4. PLoS Genetics [online]. 29. březen 2018. Svazek 14, čís. 3: e1007080, s. 1–4. Dostupné online. ISSN1553-7404. DOI10.1371/journal.pgen.1007080. PMID29596421. (anglicky)
AOUAD, Monique; TAIB, Najwa; OUDART, Anne; LECOCQ, Michel; GOUY, Manolo; BROCHIER-ARMANET, Céline. Extreme halophilic archaea derive from two distinct methanogen Class II lineages. S. 46–54. Molecular Phylogenetics and Evolution [online]. Elsevier Inc., 21. duben 2018. Svazek 127, s. 46–54. Dostupné online. Dostupné také na: [17]. ISSN1055-7903. DOI10.1016/j.ympev.2018.04.011. (anglicky)
WOLF, Yuri I.; MAKAROVA, Kira S.; YUTIN, Natalya, KOONIN, Eugene V. Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer. S. 1–33. Biology Direct [online]. 14. prosinec 2012 [cit. 2013-01-24]. Svazek 7, čís. 46, s. 1–33. Dostupné v archivu pořízeném z originálu dne 2020-05-29. PDF [18]. ISSN1745-6150. DOI10.1186/1745-6150-7-46. (anglicky)
LASEK-NESSELQUIST, Erica; GOGARTEN, Johann Peter. The effects of model choice and mitigating bias on the ribosomal tree of life. S. 17–38. Molecular Phylogenetics and Evolution [online]. 22. květen 2013. Svazek 69, čís. 1, s. 17–38. Dostupné online. ISSN1055-7903. DOI10.1016/j.ympev.2013.05.006. (anglicky)
CAVALIER-SMITH, Thomas. The neomuran revolution and phagotrophic origin of eukaryotes and cilia in the light of intracellular coevolution and a revised tree of life. Cold Spring Harbor Perspectives in Biology [online]. Cold Spring Harbor Laboratory Press, 2014-09-02 [cit. 2021-03-02]. Svazek 6, čís. 9: a016006. Dostupné online. Dostupné také na: [19]. ISSN1943-0264. DOI10.1101/cshperspect.a016006. PMID25183828. (anglicky)
SPANG, Anja; CACERES, Eva F.; ETTEMA, Thijs J. G. Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life. Science [online]. 11. srpen 2017. Svazek 357, čís. 6351: eaaf3883. Dostupné online. ISSN1095-9203. DOI10.1126/science.aaf3883. (anglicky)
OREN, Aharon; ARAHAL, David R.; GÖKER, Markus; MOORE, Edward R. B.; ROSSELLO-MORA, Ramon; SUTCLIFFE, Iain C. International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision). International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-05-01 [cit. 2024-01-25]. Roč. 73, čís. 5a. Dostupné online. ISSN1466-5034. DOI10.1099/ijsem.0.005585. PMID37219928. (anglicky)
OREN, Aharon. Emendation of Principle 8, Rules 5b, 8, 15, 33a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes to include the categories of kingdom and domain. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2023-11-01 [cit. 2024-05-28]. Roč. 73, čís. 11. ISSN1466-5034. DOI10.1099/ijsem.0.006123. PMID37909283. (anglicky)
IMACHI, Hiroyuki; NOBU, Masaru K.; KATO, Shingo; TAKAKI, Yoshihiro; MIYAZAKI, Masayuki; MIYATA, Makoto; OGAWARA, Miyuki. Promethearchaeum syntrophicum gen. nov., sp. nov., an anaerobic, obligately syntrophic archaeon, the first isolate of the lineage ‘Asgard’ archaea, and proposal of the new archaeal phylum Promethearchaeota phyl. nov. and kingdom Promethearchaeati regn. nov.. International Journal of Systematic and Evolutionary Microbiology [online]. Microbiology Society, 2024-07-05 [cit. 2024-08-14]. Roč. 74, čís. 7. ISSN1466-5034. DOI10.1099/ijsem.0.006435. PMID38967634. (anglicky)
RAYMANN, Kasie; BROCHIER-ARMANET, Céline; GRIBALDO, Simonetta. The two-domain tree of life is linked to a new root for the Archaea. S. 6670–6675. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 11. květen 2015 [cit. 2015-05-27]. Svazek 112, čís. 21, s. 6670–6675. Dostupné v archivu pořízeném z originálu dne 2015-05-29. ISSN1091-6490. DOI10.1073/pnas.1420858112. (anglicky)
EME, Laura; SPANG, Anja; LOMBARD, Jonathan; STAIRS, Courtney W.; ETTEMA, Thijs J. G. Archaea and the origin of eukaryotes. S. 711–723. Nature Reviews Microbiology [online]. Springer Nature Limited., 10. listopad 2017, oprava 2017-11-27. Svazek 15, čís. 12, s. 711–723. Dostupné online. Dostupné také na: [20]. ISSN1740-1534. DOI10.1038/nrmicro.2017.133. PMID29123225. (anglicky)
WILLIAMS, Tom A.; SZÖLLŐSI, Gergely J.; SPANG, Anja; FOSTER, Peter G.; HEAPS, Sarah E.; BOUSSAU, Bastien; ETTEMA, Thijs J. G., EMBLEY, T. Martin. Integrative modeling of gene and genome evolution roots the archaeal tree of life. S. E4602-E4611. Proceedings of the National Academy of Sciences USA (PNAS) [online]. 6. červen 2017 [cit. 2018-07-23]. Svazek 114, čís. 23, s. E4602-E4611. Dostupné v archivu pořízeném z originálu dne 2018-07-24. ISSN1091-6490. DOI10.1073/pnas.1618463114. PMID28533395. (anglicky)
Galagan J. E., et al. The genome of M. acetivorans reveals extensive metabolic and physiological diversity. Genome Research. 2002, roč. 12, čís. 4, s. 532–42. Dostupné online. ISSN1088-9051. DOI11932238.
SIMON, H M, J A Dodsworth, R M Goodman. Crenarchaeota colonize terrestrial plant roots. Environmental Microbiology. 2000, roč. 2, čís. 5, s. 495–505. Dostupné online. ISSN1462-2912. DOI11233158.