RNA (Czech Wikipedia)

Analysis of information sources in references of the Wikipedia article "RNA" in Czech language version.

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doi.org

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  • BURNETT, JC.; ROSSI, JJ. RNA-based therapeutics: current progress and future prospects.. Chem Biol. Jan 2012, roč. 19, čís. 1, s. 60–71. doi:10.1016/j.chembiol.2011.12.008. PMID 22284355. 
  • KEEFE, AD.; PAI, S.; ELLINGTON, A. Aptamers as therapeutics.. Nat Rev Drug Discov. Jul 2010, roč. 9, čís. 7, s. 537–50. doi:10.1038/nrd3141. PMID 20592747. 
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  • MIKKOLA, Satu, Stenman, Eeva; Nurmi, Kirsi; Yousefi-Salakdeh, Esmail; Strömberg, Roger; Lönnberg, Harri. The mechanism of the metal ion promoted cleavage of RNA phosphodiester bonds involves a general acid catalysis by the metal aquo ion on the departure of the leaving group. Journal of the Chemical Society, Perkin Transactions 2. 1999-01-01, čís. 8, s. 1619–1626. doi:10.1039/a903691a. 
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  • ZINSHTEYN, Boris, Nishikura, Kazuko. Adenosine-to-inosine RNA editing. Wiley Interdisciplinary Reviews: Systems Biology and Medicine. 2009-09-01, roč. 1, čís. 2, s. 202–209. doi:10.1002/wsbm.10. 
  • SQUIRES, JE.; PATEL, HR.; NOUSCH, M., et al. Widespread occurrence of 5-methylcytosine in human coding and non-coding RNA.. Nucleic Acids Res. Jun 2012, roč. 40, čís. 11, s. 5023–33. Dostupné online. doi:10.1093/nar/gks144. PMID 22344696. 
  • HALL, Kathleen B. RNA in motion. Current Opinion in Chemical Biology. 2008-12-01, roč. 12, čís. 6, s. 612–618. doi:10.1016/j.cbpa.2008.09.033. 
  • MATTICK, J. S. Non-coding RNAs: the architects of eukaryotic complexity. EMBO Reports. 2001, roč. 2, čís. 11, s. 986–991. doi:10.1093/embo-reports/kve230. 
  • JACKMAN, Jane E., Alfonzo, Juan D. Transfer RNA modifications: nature's combinatorial chemistry playground. Wiley Interdisciplinary Reviews: RNA. 2013-01-01, roč. 4, čís. 1, s. 35–48. doi:10.1002/wrna.1144. 
  • PEANO, Clelia, Pietrelli, Alessandro; Consolandi, Clarissa; Rossi, Elio; Petiti, Luca; Tagliabue, Letizia; De Bellis, Gianluca; Landini, Paolo. An efficient rRNA removal method for RNA sequencing in GC-rich bacteria. Microbial Informatics and Experimentation. 2013-01-01, roč. 3, čís. 1, s. 1. doi:10.1186/2042-5783-3-1. 
  • GUENEAU DE NOVOA, P.; WILLIAMS, KP. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.. Nucleic Acids Res. Jan 2004, roč. 32, čís. Database issue, s. D104-8. doi:10.1093/nar/gkh102. PMID 14681369. 
  • KEILER, KC. Biology of trans-translation.. Annu Rev Microbiol. 2008, roč. 62, s. 133–51. Dostupné online. doi:10.1146/annurev.micro.62.081307.162948. PMID 18557701. 
  • NAGAI, K. NEW EMBO MEMBER'S REVIEW: Structure, function and evolution of the signal recognition particle. The EMBO Journal. 2003-07-15, roč. 22, čís. 14, s. 3479–3485. doi:10.1093/emboj/cdg337. 
  • FRIEDMAN, R. C., Farh, K. K.-H.; Burge, C. B.; Bartel, D. P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Research. 2008-10-29, roč. 19, čís. 1, s. 92–105. doi:10.1101/gr.082701.108. 
  • LI, Chunsheng, Feng, Yi; Coukos, George; Zhang, Lin. Therapeutic MicroRNA Strategies in Human Cancer. The AAPS Journal. 2009-10-29, roč. 11, čís. 4, s. 747–757. doi:10.1208/s12248-009-9145-9. 
  • PADDISON, P. J. Short hairpin RNAs (shRNAs) induce sequence-specific silencing in mammalian cells. Genes & Development. 2002, roč. 16, čís. 8, s. 948–958. doi:10.1101/gad.981002. 
  • HORVATH, P.; BARRANGOU, R. CRISPR/Cas, the immune system of bacteria and archaea.. Science. Jan 2010, roč. 327, čís. 5962, s. 167–70. doi:10.1126/science.1179555. PMID 20056882. 
  • TOOR, N., Keating, K. S.; Fedorova, O.; Rajashankar, K.; Wang, J.; Pyle, A. M. Tertiary architecture of the Oceanobacillus iheyensis group II intron. RNA. 2009-12-01, roč. 16, čís. 1, s. 57–69. doi:10.1261/rna.1844010. 
  • ZHANG, B.; CECH, TR. Peptide bond formation by in vitro selected ribozymes.. Nature. Nov 1997, roč. 390, čís. 6655, s. 96–100. doi:10.1038/36375. PMID 9363898. 
  • WOCHNER, A., Attwater, J.; Coulson, A.; Holliger, P. Ribozyme-Catalyzed Transcription of an Active Ribozyme. Science. 2011-04-07, roč. 332, čís. 6026, s. 209–212. doi:10.1126/science.1200752. 
  • CHEN, Z.; LIU, N.; ZHU, G., et al. Targeting of the anti-apoptotic gene survivin in human thyroid carcinoma.. Int J Mol Med. Sep 2012, roč. 30, čís. 3, s. 465–72. Dostupné online. doi:10.3892/ijmm.2012.1046. PMID 22751750. 
  • KHAN, AU. Ribozyme: a clinical tool.. Clin Chim Acta. May 2006, roč. 367, čís. 1–2, s. 20–7. doi:10.1016/j.cca.2005.11.023. PMID 16426595. 
  • TRAHAN, C., Dragon, F. Dyskeratosis congenita mutations in the H/ACA domain of human telomerase RNA affect its assembly into a pre-RNP. RNA. 2009-02-01, roč. 15, čís. 2, s. 235–243. doi:10.1261/rna.1354009. 
  • SERGANOV, Alexander, Huang, Lili; Patel, Dinshaw J. Structural insights into amino acid binding and gene control by a lysine riboswitch. Nature. 2008, roč. 455, čís. 7217, s. 1263–1267. doi:10.1038/nature07326. 
  • COCHRANE, JC.; STROBEL, SA. Riboswitch effectors as protein enzyme cofactors.. RNA. Jun 2008, roč. 14, čís. 6, s. 993–1002. doi:10.1261/rna.908408. PMID 18430893. 
  • BERNHARDT, HS. The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a).. Biol Direct. 2012, roč. 7, s. 23. Dostupné online. doi:10.1186/1745-6150-7-23. PMID 22793875. 
  • PERKEL, JM. Visiting noncodarnia.. Biotechniques. Jun 2013, roč. 54, čís. 6, s. 301, 303–4. doi:10.2144/000114037. PMID 23750541. 
  • JOHNSSON, P.; LIPOVICH, L.; GRANDÉR, D., et al. Evolutionary conservation of long non-coding RNAs; sequence, structure, function.. Biochim Biophys Acta. Mar 2014, roč. 1840, čís. 3, s. 1063–71. doi:10.1016/j.bbagen.2013.10.035. PMID 24184936. 
  • DERRIEN, T.; GUIGÓ, R.; JOHNSON, R. The Long Non-Coding RNAs: A New (P)layer in the Dark Matter.. Front Genet. 2011, roč. 2, s. 107. doi:10.3389/fgene.2011.00107. PMID 22303401. 
  • DERRIEN, T.; JOHNSON, R.; BUSSOTTI, G., et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.. Genome Res. Sep 2012, roč. 22, čís. 9, s. 1775–89. doi:10.1101/gr.132159.111. PMID 22955988. 
  • MAO, YS.; ZHANG, B.; SPECTOR, DL. Biogenesis and function of nuclear bodies.. Trends Genet. Aug 2011, roč. 27, čís. 8, s. 295–306. doi:10.1016/j.tig.2011.05.006. PMID 21680045. 
  • IP, JY.; NAKAGAWA, S. Long non-coding RNAs in nuclear bodies.. Dev Growth Differ. Jan 2012, roč. 54, čís. 1, s. 44–54. doi:10.1111/j.1440-169X.2011.01303.x. PMID 22070123. 
  • NAKAGAWA, S.; KAGEYAMA, Y. Nuclear lncRNAs as epigenetic regulators-beyond skepticism.. Biochim Biophys Acta. Mar 2014, roč. 1839, čís. 3, s. 215–22. doi:10.1016/j.bbagrm.2013.10.009. PMID 24200874. 
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  • BELSHAW, R.; PEREIRA, V.; KATZOURAKIS, A., et al. Long-term reinfection of the human genome by endogenous retroviruses.. Proc Natl Acad Sci U S A. Apr 2004, roč. 101, čís. 14, s. 4894–9. doi:10.1073/pnas.0307800101. PMID 15044706. 
  • DUPRESSOIR, A.; LAVIALLE, C.; HEIDMANN, T. From ancestral infectious retroviruses to bona fide cellular genes: role of the captured syncytins in placentation.. Placenta. Sep 2012, roč. 33, čís. 9, s. 663–71. doi:10.1016/j.placenta.2012.05.005. PMID 22695103. 
  • EDGELL, DR.; CHALAMCHARLA, VR.; BELFORT, M. Learning to live together: mutualism between self-splicing introns and their hosts.. BMC Biol. 2011, roč. 9, s. 22. doi:10.1186/1741-7007-9-22. PMID 21481283. 
  • ROGOZIN, IB.; CARMEL, L.; CSUROS, M., et al. Origin and evolution of spliceosomal introns.. Biol Direct. 2012, roč. 7, s. 11. doi:10.1186/1745-6150-7-11. PMID 22507701. 
  • DEANA, A.; CELESNIK, H.; BELASCO, JG. The bacterial enzyme RppH triggers messenger RNA degradation by 5' pyrophosphate removal.. Nature. Jan 2008, roč. 451, čís. 7176, s. 355–8. doi:10.1038/nature06475. PMID 18202662. 
  • HOCINE, S.; SINGER, RH.; GRÜNWALD, D. RNA processing and export.. Cold Spring Harb Perspect Biol. Dec 2010, roč. 2, čís. 12, s. a000752. doi:10.1101/cshperspect.a000752. PMID 20961978. 
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  • BLOWER, MD. Molecular insights into intracellular RNA localization.. Int Rev Cell Mol Biol. 2013, roč. 302, s. 1–39. doi:10.1016/B978-0-12-407699-0.00001-7. PMID 23351709. 
  • ROUGEMAILLE, M.; VILLA, T.; GUDIPATI, RK., et al. mRNA journey to the cytoplasm: attire required.. Biol Cell. Jun 2008, roč. 100, čís. 6, s. 327–42. doi:10.1042/BC20070143. PMID 18479253. 
  • CLÉRY, A.; BLATTER, M.; ALLAIN, FH. RNA recognition motifs: boring? Not quite.. Curr Opin Struct Biol. Jun 2008, roč. 18, čís. 3, s. 290–8. doi:10.1016/j.sbi.2008.04.002. PMID 18515081. 
  • COLLINS, LJ.; KURLAND, CG.; BIGGS, P., et al. The modern RNP world of eukaryotes.. J Hered. Roč. 100, čís. 5, s. 597–604. doi:10.1093/jhered/esp064. PMID 19643816. 
  • ANDERSON, P.; KEDERSHA, N. RNA granules.. J Cell Biol. Mar 2006, roč. 172, čís. 6, s. 803–8. Dostupné online. doi:10.1083/jcb.200512082. PMID 16520386. 
  • VORONINA, E.; SEYDOUX, G.; SASSONE-CORSI, P., et al. RNA granules in germ cells.. Cold Spring Harb Perspect Biol. Dec 2011, roč. 3, čís. 12. doi:10.1101/cshperspect.a002774. PMID 21768607. 
  • KEDERSHA, N.; STOECKLIN, G.; AYODELE, M., et al. Stress granules and processing bodies are dynamically linked sites of mRNP remodeling.. J Cell Biol. Jun 2005, roč. 169, čís. 6, s. 871–84. Dostupné online. doi:10.1083/jcb.200502088. PMID 15967811. 
  • WANG, W.; VAN NIEKERK, E.; WILLIS, DE., et al. RNA transport and localized protein synthesis in neurological disorders and neural repair.. Dev Neurobiol. Aug 2007, roč. 67, čís. 9, s. 1166–82. Dostupné online. doi:10.1002/dneu.20511. PMID 17514714. 
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drugs.com

  • Vitravene fomivirsen) [online]. drugs.com [cit. 2014-04-01]. Dostupné online. (anglicky) 

genomenewsnetwork.org

  • The discovery of messenger RNA (mRNA) by Sydney Brenner (1927-), Francis Crick (1916-), Francois Jacob (1920-) and Jacques Monod (1910-1976). [online]. Genome News Network [cit. 2014-03-25]. Dostupné online. (anglicky) 

jbc.org

  • LEVENE, Phoebus. The Structure of Yeast Nucleic Acid: IV. Ammonia Hydrolysis. J. Biol. Chem. 1919, roč. 40, čís. 2, s. 415–424. Dostupné online [cit. 2014-03-14]. (anglicky) 

nature.com

  • CASPERSSON, T., SCHULTZ, JACK. Pentose Nucleotides in the Cytoplasm of Growing Tissues. Nature. 1939-04-08, roč. 143, čís. 3623, s. 602–603. Dostupné online [cit. 2014-03-17]. doi:10.1038/143602c0. 

nih.gov

ncbi.nlm.nih.gov

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  • KEEFE, AD.; PAI, S.; ELLINGTON, A. Aptamers as therapeutics.. Nat Rev Drug Discov. Jul 2010, roč. 9, čís. 7, s. 537–50. doi:10.1038/nrd3141. PMID 20592747. 
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  • GUENEAU DE NOVOA, P.; WILLIAMS, KP. The tmRNA website: reductive evolution of tmRNA in plastids and other endosymbionts.. Nucleic Acids Res. Jan 2004, roč. 32, čís. Database issue, s. D104-8. doi:10.1093/nar/gkh102. PMID 14681369. 
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  • HORVATH, P.; BARRANGOU, R. CRISPR/Cas, the immune system of bacteria and archaea.. Science. Jan 2010, roč. 327, čís. 5962, s. 167–70. doi:10.1126/science.1179555. PMID 20056882. 
  • ZHANG, B.; CECH, TR. Peptide bond formation by in vitro selected ribozymes.. Nature. Nov 1997, roč. 390, čís. 6655, s. 96–100. doi:10.1038/36375. PMID 9363898. 
  • CHEN, Z.; LIU, N.; ZHU, G., et al. Targeting of the anti-apoptotic gene survivin in human thyroid carcinoma.. Int J Mol Med. Sep 2012, roč. 30, čís. 3, s. 465–72. Dostupné online. doi:10.3892/ijmm.2012.1046. PMID 22751750. 
  • KHAN, AU. Ribozyme: a clinical tool.. Clin Chim Acta. May 2006, roč. 367, čís. 1–2, s. 20–7. doi:10.1016/j.cca.2005.11.023. PMID 16426595. 
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  • BERNHARDT, HS. The RNA world hypothesis: the worst theory of the early evolution of life (except for all the others)(a).. Biol Direct. 2012, roč. 7, s. 23. Dostupné online. doi:10.1186/1745-6150-7-23. PMID 22793875. 
  • PERKEL, JM. Visiting noncodarnia.. Biotechniques. Jun 2013, roč. 54, čís. 6, s. 301, 303–4. doi:10.2144/000114037. PMID 23750541. 
  • JOHNSSON, P.; LIPOVICH, L.; GRANDÉR, D., et al. Evolutionary conservation of long non-coding RNAs; sequence, structure, function.. Biochim Biophys Acta. Mar 2014, roč. 1840, čís. 3, s. 1063–71. doi:10.1016/j.bbagen.2013.10.035. PMID 24184936. 
  • DERRIEN, T.; GUIGÓ, R.; JOHNSON, R. The Long Non-Coding RNAs: A New (P)layer in the Dark Matter.. Front Genet. 2011, roč. 2, s. 107. doi:10.3389/fgene.2011.00107. PMID 22303401. 
  • DERRIEN, T.; JOHNSON, R.; BUSSOTTI, G., et al. The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.. Genome Res. Sep 2012, roč. 22, čís. 9, s. 1775–89. doi:10.1101/gr.132159.111. PMID 22955988. 
  • MAO, YS.; ZHANG, B.; SPECTOR, DL. Biogenesis and function of nuclear bodies.. Trends Genet. Aug 2011, roč. 27, čís. 8, s. 295–306. doi:10.1016/j.tig.2011.05.006. PMID 21680045. 
  • IP, JY.; NAKAGAWA, S. Long non-coding RNAs in nuclear bodies.. Dev Growth Differ. Jan 2012, roč. 54, čís. 1, s. 44–54. doi:10.1111/j.1440-169X.2011.01303.x. PMID 22070123. 
  • NAKAGAWA, S.; KAGEYAMA, Y. Nuclear lncRNAs as epigenetic regulators-beyond skepticism.. Biochim Biophys Acta. Mar 2014, roč. 1839, čís. 3, s. 215–22. doi:10.1016/j.bbagrm.2013.10.009. PMID 24200874. 
  • BELSHAW, R.; PEREIRA, V.; KATZOURAKIS, A., et al. Long-term reinfection of the human genome by endogenous retroviruses.. Proc Natl Acad Sci U S A. Apr 2004, roč. 101, čís. 14, s. 4894–9. doi:10.1073/pnas.0307800101. PMID 15044706. 
  • DUPRESSOIR, A.; LAVIALLE, C.; HEIDMANN, T. From ancestral infectious retroviruses to bona fide cellular genes: role of the captured syncytins in placentation.. Placenta. Sep 2012, roč. 33, čís. 9, s. 663–71. doi:10.1016/j.placenta.2012.05.005. PMID 22695103. 
  • EDGELL, DR.; CHALAMCHARLA, VR.; BELFORT, M. Learning to live together: mutualism between self-splicing introns and their hosts.. BMC Biol. 2011, roč. 9, s. 22. doi:10.1186/1741-7007-9-22. PMID 21481283. 
  • ROGOZIN, IB.; CARMEL, L.; CSUROS, M., et al. Origin and evolution of spliceosomal introns.. Biol Direct. 2012, roč. 7, s. 11. doi:10.1186/1745-6150-7-11. PMID 22507701. 
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