Chromosome conformation capture (German Wikipedia)

Analysis of information sources in references of the Wikipedia article "Chromosome conformation capture" in German language version.

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  • de Wit E, de Laat W: A decade of 3C technologies: insights into nuclear organization. In: Genes & Development. 26. Jahrgang, Nr. 1, Januar 2012, S. 11–24, doi:10.1101/gad.179804.111, PMID 22215806, PMC 3258961 (freier Volltext).
  • Hakim O, Misteli T: SnapShot: Chromosome confirmation capture. In: Cell. 148. Jahrgang, Nr. 5, März 2012, S. 1068.e1–2, doi:10.1016/j.cell.2012.02.019, PMID 22385969, PMC 6374129 (freier Volltext).
  • Ay F, Bailey TL, Noble WS: Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. In: Genome Research. 24. Jahrgang, Nr. 6, Juni 2014, S. 999–1011, doi:10.1101/gr.160374.113, PMID 24501021, PMC 4032863 (freier Volltext).
  • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL: A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. In: Cell. 159. Jahrgang, Nr. 7, Dezember 2014, S. 1665–80, doi:10.1016/j.cell.2014.11.021, PMID 25497547, PMC 5635824 (freier Volltext).
  • Varoquaux N, Ay F, Noble WS, Vert JP: A statistical approach for inferring the 3D structure of the genome. In: Bioinformatics. 30. Jahrgang, Nr. 12, Juni 2014, S. i26–33, doi:10.1093/bioinformatics/btu268, PMID 24931992, PMC 4229903 (freier Volltext).
  • Alexey Gavrilov, Elvira Eivazova, Iryna Pirozhkova, Marc Lipinski, Sergey Razin: Chromosome Conformation Capture (from 3C to 5C) and Its ChIP-Based Modification. In: Chromatin Immunoprecipitation Assays. Band 567. Humana Press, Totowa, NJ 2009, ISBN 978-1-60327-413-5, S. 171–188, doi:10.1007/978-1-60327-414-2_12 (springer.com [abgerufen am 21. Juli 2019]).
  • Naumova N, Smith EM, Zhan Y, Dekker J: Analysis of long-range chromatin interactions using Chromosome Conformation Capture. In: Methods. 58. Jahrgang, Nr. 3, November 2012, S. 192–203, doi:10.1016/j.ymeth.2012.07.022, PMID 22903059, PMC 3874837 (freier Volltext).
  • Belton JM, Dekker J: Chromosome Conformation Capture (3C) in Budding Yeast. In: Cold Spring Harbor Protocols. 2015. Jahrgang, Nr. 6, Juni 2015, S. 580–6, doi:10.1101/pdb.prot085175, PMID 26034304.
  • Gavrilov AA, Golov AK, Razin SV: Actual ligation frequencies in the chromosome conformation capture procedure. In: PLOS ONE. 8. Jahrgang, Nr. 3, 26. März 2013, S. e60403, doi:10.1371/journal.pone.0060403, PMID 23555968, PMC 3608588 (freier Volltext), bibcode:2013PLoSO...860403G.
  • Naumova N, Smith EM, Zhan Y, Dekker J: Analysis of long-range chromatin interactions using Chromosome Conformation Capture. In: Methods. 58. Jahrgang, Nr. 3, November 2012, S. 192–203, doi:10.1016/j.ymeth.2012.07.022, PMID 22903059, PMC 3874837 (freier Volltext).
  • Gavrilov AA, Golov AK, Razin SV: Actual ligation frequencies in the chromosome conformation capture procedure. In: PLOS ONE. 8. Jahrgang, Nr. 3, 26. März 2013, S. e60403, doi:10.1371/journal.pone.0060403, PMID 23555968, PMC 3608588 (freier Volltext), bibcode:2013PLoSO...860403G.
  • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). In: Nature Genetics. 38. Jahrgang, Nr. 11, November 2006, S. 1348–54, doi:10.1038/ng1896, PMID 17033623.
  • Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J: Comprehensive mapping of long-range interactions reveals folding principles of the human genome. In: Science. 326. Jahrgang, Nr. 5950, Oktober 2009, S. 289–93, doi:10.1126/science.1181369, PMID 19815776, PMC 2858594 (freier Volltext), bibcode:2009Sci...326..289L.
  • Harewood L, Kishore K, Eldridge MD, Wingett S, Pearson D, Schoenfelder S, Collins VP, Fraser P: Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours. In: Genome Biology. 18. Jahrgang, Nr. 1, Juni 2017, S. 125, doi:10.1186/s13059-017-1253-8, PMID 28655341, PMC 5488307 (freier Volltext).
  • Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J: Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. In: Nature Biotechnology. 31. Jahrgang, Nr. 12, Dezember 2013, S. 1119–25, doi:10.1038/nbt.2727, PMID 24185095, PMC 4117202 (freier Volltext).
  • Schmitt AD, Hu M, Ren B: Genome-wide mapping and analysis of chromosome architecture. In: Nature Reviews. Molecular Cell Biology. 17. Jahrgang, Nr. 12, Dezember 2016, S. 743–755, doi:10.1038/nrm.2016.104, PMID 27580841, PMC 5763923 (freier Volltext).
  • Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR: Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. In: Nature Genetics. 46. Jahrgang, Nr. 2, Februar 2014, S. 205–12, doi:10.1038/ng.2871, PMID 24413732 (englisch, unil.ch).
  • Davies JO, Telenius JM, McGowan SJ, Roberts NA, Taylor S, Higgs DR, Hughes JR: Multiplexed analysis of chromosome conformation at vastly improved sensitivity. In: Nature Methods. 13. Jahrgang, Nr. 1, Januar 2016, S. 74–80, doi:10.1038/nmeth.3664, PMID 26595209, PMC 4724891 (freier Volltext) – (englisch).
  • Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR: Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. In: Nature Genetics. 46. Jahrgang, Nr. 2, Februar 2014, S. 205–12, doi:10.1038/ng.2871, PMID 24413732 (englisch, unil.ch).
  • Jäger R, Migliorini G, Henrion M, Kandaswamy R, Speedy HE, Heindl A, Whiffin N, Carnicer MJ, Broome L, Dryden N, Nagano T, Schoenfelder S, Enge M, Yuan Y, Taipale J, Fraser P, Fletcher O, Houlston RS: Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci. In: Nature Communications. 6. Jahrgang, Februar 2015, S. 6178, doi:10.1038/ncomms7178, PMID 25695508, PMC 4346635 (freier Volltext), bibcode:2015NatCo...6.6178J.
  • Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. In: Nature. 502. Jahrgang, Nr. 7469, Oktober 2013, S. 59–64, doi:10.1038/nature12593, PMID 24067610, PMC 3869051 (freier Volltext), bibcode:2013Natur.502...59N.
  • Single-cell epigenomics: techniques and emerging applications. In: Nature Reviews. Genetics. 16. Jahrgang, Nr. 12, Dezember 2015, S. 716–26, doi:10.1038/nrg3980, PMID 26460349.
  • Horike S, Cai S, Miyano M, Cheng JF, Kohwi-Shigematsu T: Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. In: Nature Genetics. 37. Jahrgang, Nr. 1, Januar 2005, S. 31–40, doi:10.1038/ng1491, PMID 15608638.
  • The second decade of 3C technologies: detailed insights into nuclear organization. In: Genes & Development. 30. Jahrgang, Nr. 12, Juni 2016, S. 1357–82, doi:10.1101/gad.281964.116, PMID 27340173, PMC 4926860 (freier Volltext).
  • Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W: Looping and interaction between hypersensitive sites in the active beta-globin locus. In: Molecular Cell. 10. Jahrgang, Nr. 6, Dezember 2002, S. 1453–65, doi:10.1016/S1097-2765(02)00781-5, PMID 12504019.
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  • Dekker J, Marti-Renom MA, Mirny LA: Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. In: Nature Reviews. Genetics. 14. Jahrgang, Nr. 6, Juni 2013, S. 390–403, doi:10.1038/nrg3454, PMID 23657480, PMC 3874835 (freier Volltext).
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  • Lajoie BR, van Berkum NL, Sanyal A, Dekker J: My5C: web tools for chromosome conformation capture studies. In: Nature Methods. 6. Jahrgang, Nr. 10, Oktober 2009, S. 690–1, doi:10.1038/nmeth1009-690, PMID 19789528, PMC 2859197 (freier Volltext).
  • Deng X, Ma W, Ramani V, Hill A, Yang F, Ay F, Berletch JB, Blau CA, Shendure J, Duan Z, Noble WS, Disteche CM: Bipartite structure of the inactive mouse X chromosome. In: Genome Biology. 16. Jahrgang, Nr. 1, August 2015, S. 152, doi:10.1186/s13059-015-0728-8, PMID 26248554, PMC 4539712 (freier Volltext).
  • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL: A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. In: Cell. 159. Jahrgang, Nr. 7, Dezember 2014, S. 1665–80, doi:10.1016/j.cell.2014.11.021, PMID 25497547, PMC 5635824 (freier Volltext).
  • Zhou X, Lowdon RF, Li D, Lawson HA, Madden PA, Costello JF, Wang T: Exploring long-range genome interactions using the WashU Epigenome Browser. In: Nature Methods. 10. Jahrgang, Nr. 5, Mai 2013, S. 375–6, doi:10.1038/nmeth.2440, PMID 23629413, PMC 3820286 (freier Volltext).
  • Yardımcı GG, Noble WS: Software tools for visualizing Hi-C data. In: Genome Biology. 18. Jahrgang, Nr. 1, Februar 2017, S. 26, doi:10.1186/s13059-017-1161-y, PMID 28159004, PMC 5290626 (freier Volltext).
  • Genome-wide mapping and analysis of chromosome architecture. In: Nature Reviews. Molecular Cell Biology. 17. Jahrgang, Nr. 12, Dezember 2016, S. 743–755, doi:10.1038/nrm.2016.104, PMID 27580841, PMC 5763923 (freier Volltext).
  • Cavalli G, Misteli T: Functional implications of genome topology. In: Nature Structural & Molecular Biology. 20. Jahrgang, Nr. 3, März 2013, S. 290–9, doi:10.1038/nsmb.2474, PMID 23463314, PMC 6320674 (freier Volltext).
  • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL: A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. In: Cell. 159. Jahrgang, Nr. 7, Dezember 2014, S. 1665–80, doi:10.1016/j.cell.2014.11.021, PMID 25497547, PMC 5635824 (freier Volltext).
  • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL: A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. In: Cell. 159. Jahrgang, Nr. 7, Dezember 2014, S. 1665–80, doi:10.1016/j.cell.2014.11.021, PMID 25497547, PMC 5635824 (freier Volltext).
  • Yardımcı GG, Noble WS: Software tools for visualizing Hi-C data. In: Genome Biology. 18. Jahrgang, Nr. 1, Februar 2017, S. 26, doi:10.1186/s13059-017-1161-y, PMID 28159004, PMC 5290626 (freier Volltext).
  • Iterative correction of Hi-C data reveals hallmarks of chromosome organization. In: Nature Methods. 9. Jahrgang, Nr. 10, Oktober 2012, S. 999–1003, doi:10.1038/nmeth.2148, PMID 22941365, PMC 3816492 (freier Volltext).
  • Zambelli F, Pesole G, Pavesi G: Motif discovery and transcription factor binding sites before and after the next-generation sequencing era. In: Briefings in Bioinformatics. 14. Jahrgang, Nr. 2, März 2013, S. 225–37, doi:10.1093/bib/bbs016, PMID 22517426, PMC 3603212 (freier Volltext).
  • Bailey, S. D., Zhang, X., Desai, K., Aid, M., Corradin, O., Cowper-Sal·lari, R., … Lupien, M. (2015). ZNF143 provides sequence specificity to secure chromatin interactions at gene promoters. Nature Communications, 2, 6186. doi:10.1038/ncomms7186
  • Harewood L, Kishore K, Eldridge MD, Wingett S, Pearson D, Schoenfelder S, Collins VP, Fraser P: Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours. In: Genome Biology. 18. Jahrgang, Nr. 1, Juni 2017, S. 125, doi:10.1186/s13059-017-1253-8, PMID 28655341, PMC 5488307 (freier Volltext).
  • Taberlay PC, Achinger-Kawecka J, Lun AT, Buske FA, Sabir K, Gould CM, Zotenko E, Bert SA, Giles KA, Bauer DC, Smyth GK, Stirzaker C, O’Donoghue SI, Clark SJ: Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations. In: Genome Research. 26. Jahrgang, Nr. 6, Juni 2016, S. 719–31, doi:10.1101/gr.201517.115, PMID 27053337, PMC 4889976 (freier Volltext).

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ncbi.nlm.nih.gov

  • de Wit E, de Laat W: A decade of 3C technologies: insights into nuclear organization. In: Genes & Development. 26. Jahrgang, Nr. 1, Januar 2012, S. 11–24, doi:10.1101/gad.179804.111, PMID 22215806, PMC 3258961 (freier Volltext).
  • Hakim O, Misteli T: SnapShot: Chromosome confirmation capture. In: Cell. 148. Jahrgang, Nr. 5, März 2012, S. 1068.e1–2, doi:10.1016/j.cell.2012.02.019, PMID 22385969, PMC 6374129 (freier Volltext).
  • Ay F, Bailey TL, Noble WS: Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts. In: Genome Research. 24. Jahrgang, Nr. 6, Juni 2014, S. 999–1011, doi:10.1101/gr.160374.113, PMID 24501021, PMC 4032863 (freier Volltext).
  • Rao SS, Huntley MH, Durand NC, Stamenova EK, Bochkov ID, Robinson JT, Sanborn AL, Machol I, Omer AD, Lander ES, Aiden EL: A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. In: Cell. 159. Jahrgang, Nr. 7, Dezember 2014, S. 1665–80, doi:10.1016/j.cell.2014.11.021, PMID 25497547, PMC 5635824 (freier Volltext).
  • Varoquaux N, Ay F, Noble WS, Vert JP: A statistical approach for inferring the 3D structure of the genome. In: Bioinformatics. 30. Jahrgang, Nr. 12, Juni 2014, S. i26–33, doi:10.1093/bioinformatics/btu268, PMID 24931992, PMC 4229903 (freier Volltext).
  • Naumova N, Smith EM, Zhan Y, Dekker J: Analysis of long-range chromatin interactions using Chromosome Conformation Capture. In: Methods. 58. Jahrgang, Nr. 3, November 2012, S. 192–203, doi:10.1016/j.ymeth.2012.07.022, PMID 22903059, PMC 3874837 (freier Volltext).
  • Belton JM, Dekker J: Chromosome Conformation Capture (3C) in Budding Yeast. In: Cold Spring Harbor Protocols. 2015. Jahrgang, Nr. 6, Juni 2015, S. 580–6, doi:10.1101/pdb.prot085175, PMID 26034304.
  • Gavrilov AA, Golov AK, Razin SV: Actual ligation frequencies in the chromosome conformation capture procedure. In: PLOS ONE. 8. Jahrgang, Nr. 3, 26. März 2013, S. e60403, doi:10.1371/journal.pone.0060403, PMID 23555968, PMC 3608588 (freier Volltext), bibcode:2013PLoSO...860403G.
  • Naumova N, Smith EM, Zhan Y, Dekker J: Analysis of long-range chromatin interactions using Chromosome Conformation Capture. In: Methods. 58. Jahrgang, Nr. 3, November 2012, S. 192–203, doi:10.1016/j.ymeth.2012.07.022, PMID 22903059, PMC 3874837 (freier Volltext).
  • Gavrilov AA, Golov AK, Razin SV: Actual ligation frequencies in the chromosome conformation capture procedure. In: PLOS ONE. 8. Jahrgang, Nr. 3, 26. März 2013, S. e60403, doi:10.1371/journal.pone.0060403, PMID 23555968, PMC 3608588 (freier Volltext), bibcode:2013PLoSO...860403G.
  • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). In: Nature Genetics. 38. Jahrgang, Nr. 11, November 2006, S. 1348–54, doi:10.1038/ng1896, PMID 17033623.
  • Lieberman-Aiden E, van Berkum NL, Williams L, Imakaev M, Ragoczy T, Telling A, Amit I, Lajoie BR, Sabo PJ, Dorschner MO, Sandstrom R, Bernstein B, Bender MA, Groudine M, Gnirke A, Stamatoyannopoulos J, Mirny LA, Lander ES, Dekker J: Comprehensive mapping of long-range interactions reveals folding principles of the human genome. In: Science. 326. Jahrgang, Nr. 5950, Oktober 2009, S. 289–93, doi:10.1126/science.1181369, PMID 19815776, PMC 2858594 (freier Volltext), bibcode:2009Sci...326..289L.
  • Harewood L, Kishore K, Eldridge MD, Wingett S, Pearson D, Schoenfelder S, Collins VP, Fraser P: Hi-C as a tool for precise detection and characterisation of chromosomal rearrangements and copy number variation in human tumours. In: Genome Biology. 18. Jahrgang, Nr. 1, Juni 2017, S. 125, doi:10.1186/s13059-017-1253-8, PMID 28655341, PMC 5488307 (freier Volltext).
  • Burton JN, Adey A, Patwardhan RP, Qiu R, Kitzman JO, Shendure J: Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions. In: Nature Biotechnology. 31. Jahrgang, Nr. 12, Dezember 2013, S. 1119–25, doi:10.1038/nbt.2727, PMID 24185095, PMC 4117202 (freier Volltext).
  • Schmitt AD, Hu M, Ren B: Genome-wide mapping and analysis of chromosome architecture. In: Nature Reviews. Molecular Cell Biology. 17. Jahrgang, Nr. 12, Dezember 2016, S. 743–755, doi:10.1038/nrm.2016.104, PMID 27580841, PMC 5763923 (freier Volltext).
  • Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR: Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. In: Nature Genetics. 46. Jahrgang, Nr. 2, Februar 2014, S. 205–12, doi:10.1038/ng.2871, PMID 24413732 (englisch, unil.ch).
  • Davies JO, Telenius JM, McGowan SJ, Roberts NA, Taylor S, Higgs DR, Hughes JR: Multiplexed analysis of chromosome conformation at vastly improved sensitivity. In: Nature Methods. 13. Jahrgang, Nr. 1, Januar 2016, S. 74–80, doi:10.1038/nmeth.3664, PMID 26595209, PMC 4724891 (freier Volltext) – (englisch).
  • Hughes JR, Roberts N, McGowan S, Hay D, Giannoulatou E, Lynch M, De Gobbi M, Taylor S, Gibbons R, Higgs DR: Analysis of hundreds of cis-regulatory landscapes at high resolution in a single, high-throughput experiment. In: Nature Genetics. 46. Jahrgang, Nr. 2, Februar 2014, S. 205–12, doi:10.1038/ng.2871, PMID 24413732 (englisch, unil.ch).
  • Jäger R, Migliorini G, Henrion M, Kandaswamy R, Speedy HE, Heindl A, Whiffin N, Carnicer MJ, Broome L, Dryden N, Nagano T, Schoenfelder S, Enge M, Yuan Y, Taipale J, Fraser P, Fletcher O, Houlston RS: Capture Hi-C identifies the chromatin interactome of colorectal cancer risk loci. In: Nature Communications. 6. Jahrgang, Februar 2015, S. 6178, doi:10.1038/ncomms7178, PMID 25695508, PMC 4346635 (freier Volltext), bibcode:2015NatCo...6.6178J.
  • Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. In: Nature. 502. Jahrgang, Nr. 7469, Oktober 2013, S. 59–64, doi:10.1038/nature12593, PMID 24067610, PMC 3869051 (freier Volltext), bibcode:2013Natur.502...59N.
  • Single-cell epigenomics: techniques and emerging applications. In: Nature Reviews. Genetics. 16. Jahrgang, Nr. 12, Dezember 2015, S. 716–26, doi:10.1038/nrg3980, PMID 26460349.
  • Horike S, Cai S, Miyano M, Cheng JF, Kohwi-Shigematsu T: Loss of silent-chromatin looping and impaired imprinting of DLX5 in Rett syndrome. In: Nature Genetics. 37. Jahrgang, Nr. 1, Januar 2005, S. 31–40, doi:10.1038/ng1491, PMID 15608638.
  • The second decade of 3C technologies: detailed insights into nuclear organization. In: Genes & Development. 30. Jahrgang, Nr. 12, Juni 2016, S. 1357–82, doi:10.1101/gad.281964.116, PMID 27340173, PMC 4926860 (freier Volltext).
  • Tolhuis B, Palstra RJ, Splinter E, Grosveld F, de Laat W: Looping and interaction between hypersensitive sites in the active beta-globin locus. In: Molecular Cell. 10. Jahrgang, Nr. 6, Dezember 2002, S. 1453–65, doi:10.1016/S1097-2765(02)00781-5, PMID 12504019.
  • Cavalli G, Misteli T: Functional implications of genome topology. In: Nature Structural & Molecular Biology. 20. Jahrgang, Nr. 3, März 2013, S. 290–9, doi:10.1038/nsmb.2474, PMID 23463314, PMC 6320674 (freier Volltext).
  • Dekker J, Marti-Renom MA, Mirny LA: Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data. In: Nature Reviews. Genetics. 14. Jahrgang, Nr. 6, Juni 2013, S. 390–403, doi:10.1038/nrg3454, PMID 23657480, PMC 3874835 (freier Volltext).
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