Christoph B. Messner, Vadim Demichev, Nic Bloomfield, Jason S. L. Yu, Matthew White, Marco Kreidl, Anna-Sophia Egger, Anja Freiwald, Gordana Ivosev, Fras Wasim, Aleksej Zelezniak, Linda Jürgens, Norbert Suttorp, Leif Erik Sander, Florian Kurth, Kathryn S. Lilley, Michael Mülleder, Stephen Tate, Markus Ralser: Ultra-fast proteomics with Scanning SWATH. In: Nature Biotechnology. Band39, Nr.7, Juli 2021, ISSN1087-0156, S.846–854, doi:10.1038/s41587-021-00860-4, PMID 33767396.
Ziyue Wang, Michael Mülleder, Ihor Batruch, Anjali Chelur, Kathrin Textoris-Taube, Torsten Schwecke, Johannes Hartl, Jason Causon, Jose Castro-Perez, Vadim Demichev, Stephen Tate, Markus Ralser: High-throughput proteomics of nanogram-scale samples with Zeno SWATH DIA. Biochemistry, 14. April 2022, doi:10.1101/2022.04.14.488299.
Ludovic C. Gillet, Pedro Navarro, Stephen Tate, Hannes Röst, Nathalie Selevsek, Lukas Reiter, Ron Bonner, Ruedi Aebersold: Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis. In: Molecular & Cellular Proteomics. Band11, Nr.6, Juni 2012, S.O111.016717, doi:10.1074/mcp.O111.016717, PMID 22261725, PMC 3433915 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Vadim Demichev, Christoph B. Messner, Spyros I. Vernardis, Kathryn S. Lilley, Markus Ralser: DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. In: Nature Methods. Band17, Nr.1, Januar 2020, ISSN1548-7091, S.41–44, doi:10.1038/s41592-019-0638-x, PMID 31768060, PMC 6949130 (freier Volltext).
Sreejith Jayasree Varma, Enrica Calvani, Nana-Maria Grüning, Christoph B Messner, Nicholas Grayson, Floriana Capuano, Michael Mülleder, Markus Ralser: Global analysis of cytosine and adenine DNA modifications across the tree of life. In: eLife. Band11, 28. Juli 2022, ISSN2050-084X, S.e81002, doi:10.7554/eLife.81002, PMID 35900202, PMC 9333990 (freier Volltext).
Markus Ralser, Sreejith J. Varma, Richard A. Notebaart: The evolution of the metabolic network over long timelines. In: Current Opinion in Systems Biology. Band28, Dezember 2021, S.100402, doi:10.1016/j.coisb.2021.100402 (elsevier.com [abgerufen am 20. Januar 2023]).
Kate Campbell, Jakob Vowinckel, Michael Mülleder, Silke Malmsheimer, Nicola Lawrence, Enrica Calvani, Leonor Miller-Fleming, Mohammad T Alam, Stefan Christen, Markus A Keller, Markus Ralser: Self-establishing communities enable cooperative metabolite exchange in a eukaryote. In: eLife. Band4, 26. Oktober 2015, ISSN2050-084X, S.e09943, doi:10.7554/eLife.09943, PMID 26499891, PMC 4695387 (freier Volltext).
Mohammad Tauqeer Alam, Viridiana Olin-Sandoval, Anna Stincone, Markus A. Keller, Aleksej Zelezniak, Ben F. Luisi, Markus Ralser: The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. In: Nature Communications. Band8, Nr.1, 10. Juli 2017, ISSN2041-1723, S.16018, doi:10.1038/ncomms16018, PMID 28691704, PMC 5508129 (freier Volltext).
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser: Functional Metabolomics Describes the Yeast Biosynthetic Regulome. In: Cell. Band167, Nr.2, Oktober 2016, S.553–565.e12, doi:10.1016/j.cell.2016.09.007, PMID 27693354, PMC 5055083 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Christoph B. Messner, Vadim Demichev, Julia Muenzner, Simran Aulakh, Annika Röhl, Lucía Herrera-Domínguez, Anna-Sophia Egger, Stephan Kamrad, Oliver Lemke, Enrica Calvani, Michael Mülleder, Kathryn S. Lilley, Georg Kustatscher, Markus Ralser: The Proteomic Landscape of Genome-Wide Genetic Perturbations. Systems Biology, 18. Mai 2022, doi:10.1101/2022.05.17.492318.
Julia Muenzner, Pauline Trébulle, Federica Agostini, Christoph B. Messner, Martin Steger, Andrea Lehmann, Elodie Caudal, Anna-Sophia Egger, Fatma Amari, Natalie Barthel, Matteo De Chiara, Michael Mülleder, Vadim Demichev, Gianni Liti, Joseph Schacherer, Toni Gossmann, Judith Berman, Markus Ralser: The natural diversity of the yeast proteome reveals chromosome-wide dosage compensation in aneuploids. Systems Biology, 8. April 2022, doi:10.1101/2022.04.06.487392.
Kate Campbell, Jakob Vowinckel, Markus A. Keller, Markus Ralser: Methionine Metabolism Alters Oxidative Stress Resistance via the Pentose Phosphate Pathway. In: Antioxidants & Redox Signaling. Band24, Nr.10, April 2016, ISSN1523-0864, S.543–547, doi:10.1089/ars.2015.6516, PMID 26596469, PMC 4827311 (freier Volltext).
Markus Ralser, Mirjam M C Wamelink, Simone Latkolik, Erwin E W Jansen, Hans Lehrach, Cornelis Jakobs: Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response. In: Nature Biotechnology. Band27, Nr.7, Juli 2009, ISSN1087-0156, S.604–605, doi:10.1038/nbt0709-604.
Markus A Keller, Gabriel Piedrafita, Markus Ralser: The widespread role of non-enzymatic reactions in cellular metabolism. In: Current Opinion in Biotechnology. Band34, August 2015, S.153–161, doi:10.1016/j.copbio.2014.12.020, PMID 25617827, PMC 4728180 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Markus A Keller, Alexandra V Turchyn, Markus Ralser: Non‐enzymatic glycolysis and pentose phosphate pathway‐like reactions in a plausible A rchean ocean. In: Molecular Systems Biology. Band10, Nr.4, April 2014, ISSN1744-4292, S.725, doi:10.1002/msb.20145228, PMID 24771084, PMC 4023395 (freier Volltext).
Christoph B. Messner, Paul C. Driscoll, Gabriel Piedrafita, Michael F. L. De Volder, Markus Ralser: Nonenzymatic gluconeogenesis-like formation of fructose 1,6-bisphosphate in ice. In: Proceedings of the National Academy of Sciences. Band114, Nr.28, 11. Juli 2017, ISSN0027-8424, S.7403–7407, doi:10.1073/pnas.1702274114, PMID 28652321, PMC 5514728 (freier Volltext).
Jason S. L. Yu, Clara Correia-Melo, Francisco Zorrilla, Lucia Herrera-Dominguez, Mary Y. Wu, Johannes Hartl, Kate Campbell, Sonja Blasche, Marco Kreidl, Anna-Sophia Egger, Christoph B. Messner, Vadim Demichev, Anja Freiwald, Michael Mülleder, Michael Howell, Judith Berman, Kiran R. Patil, Mohammad Tauqeer Alam, Markus Ralser: Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance. In: Nature Microbiology. Band7, Nr.4, 21. März 2022, ISSN2058-5276, S.542–555, doi:10.1038/s41564-022-01072-5, PMID 35314781, PMC 8975748 (freier Volltext).
Ziyue Wang, Adam Cryar, Oliver Lemke, Pinkus Tober-Lau, Daniela Ludwig, Elisa Theresa Helbig, Stefan Hippenstiel, Leif-Erik Sander, Daniel Blake, Catherine S. Lane, Rebekah L. Sayers, Christoph Mueller, Johannes Zeiser, StJohn Townsend, Vadim Demichev, Michael Mülleder, Florian Kurth, Ernestas Sirka, Johannes Hartl, Markus Ralser: A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study. In: eClinicalMedicine. Band49, Juli 2022, S.101495, doi:10.1016/j.eclinm.2022.101495, PMID 35702332, PMC 9181834 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
elsevier.com
linkinghub.elsevier.com
Ludovic C. Gillet, Pedro Navarro, Stephen Tate, Hannes Röst, Nathalie Selevsek, Lukas Reiter, Ron Bonner, Ruedi Aebersold: Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis. In: Molecular & Cellular Proteomics. Band11, Nr.6, Juni 2012, S.O111.016717, doi:10.1074/mcp.O111.016717, PMID 22261725, PMC 3433915 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Markus Ralser, Sreejith J. Varma, Richard A. Notebaart: The evolution of the metabolic network over long timelines. In: Current Opinion in Systems Biology. Band28, Dezember 2021, S.100402, doi:10.1016/j.coisb.2021.100402 (elsevier.com [abgerufen am 20. Januar 2023]).
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser: Functional Metabolomics Describes the Yeast Biosynthetic Regulome. In: Cell. Band167, Nr.2, Oktober 2016, S.553–565.e12, doi:10.1016/j.cell.2016.09.007, PMID 27693354, PMC 5055083 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Markus A Keller, Gabriel Piedrafita, Markus Ralser: The widespread role of non-enzymatic reactions in cellular metabolism. In: Current Opinion in Biotechnology. Band34, August 2015, S.153–161, doi:10.1016/j.copbio.2014.12.020, PMID 25617827, PMC 4728180 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Ziyue Wang, Adam Cryar, Oliver Lemke, Pinkus Tober-Lau, Daniela Ludwig, Elisa Theresa Helbig, Stefan Hippenstiel, Leif-Erik Sander, Daniel Blake, Catherine S. Lane, Rebekah L. Sayers, Christoph Mueller, Johannes Zeiser, StJohn Townsend, Vadim Demichev, Michael Mülleder, Florian Kurth, Ernestas Sirka, Johannes Hartl, Markus Ralser: A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study. In: eClinicalMedicine. Band49, Juli 2022, S.101495, doi:10.1016/j.eclinm.2022.101495, PMID 35702332, PMC 9181834 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Christoph B. Messner, Vadim Demichev, Nic Bloomfield, Jason S. L. Yu, Matthew White, Marco Kreidl, Anna-Sophia Egger, Anja Freiwald, Gordana Ivosev, Fras Wasim, Aleksej Zelezniak, Linda Jürgens, Norbert Suttorp, Leif Erik Sander, Florian Kurth, Kathryn S. Lilley, Michael Mülleder, Stephen Tate, Markus Ralser: Ultra-fast proteomics with Scanning SWATH. In: Nature Biotechnology. Band39, Nr.7, Juli 2021, ISSN1087-0156, S.846–854, doi:10.1038/s41587-021-00860-4, PMID 33767396.
Ludovic C. Gillet, Pedro Navarro, Stephen Tate, Hannes Röst, Nathalie Selevsek, Lukas Reiter, Ron Bonner, Ruedi Aebersold: Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis. In: Molecular & Cellular Proteomics. Band11, Nr.6, Juni 2012, S.O111.016717, doi:10.1074/mcp.O111.016717, PMID 22261725, PMC 3433915 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Vadim Demichev, Christoph B. Messner, Spyros I. Vernardis, Kathryn S. Lilley, Markus Ralser: DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. In: Nature Methods. Band17, Nr.1, Januar 2020, ISSN1548-7091, S.41–44, doi:10.1038/s41592-019-0638-x, PMID 31768060, PMC 6949130 (freier Volltext).
Sreejith Jayasree Varma, Enrica Calvani, Nana-Maria Grüning, Christoph B Messner, Nicholas Grayson, Floriana Capuano, Michael Mülleder, Markus Ralser: Global analysis of cytosine and adenine DNA modifications across the tree of life. In: eLife. Band11, 28. Juli 2022, ISSN2050-084X, S.e81002, doi:10.7554/eLife.81002, PMID 35900202, PMC 9333990 (freier Volltext).
Kate Campbell, Jakob Vowinckel, Michael Mülleder, Silke Malmsheimer, Nicola Lawrence, Enrica Calvani, Leonor Miller-Fleming, Mohammad T Alam, Stefan Christen, Markus A Keller, Markus Ralser: Self-establishing communities enable cooperative metabolite exchange in a eukaryote. In: eLife. Band4, 26. Oktober 2015, ISSN2050-084X, S.e09943, doi:10.7554/eLife.09943, PMID 26499891, PMC 4695387 (freier Volltext).
Mohammad Tauqeer Alam, Viridiana Olin-Sandoval, Anna Stincone, Markus A. Keller, Aleksej Zelezniak, Ben F. Luisi, Markus Ralser: The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. In: Nature Communications. Band8, Nr.1, 10. Juli 2017, ISSN2041-1723, S.16018, doi:10.1038/ncomms16018, PMID 28691704, PMC 5508129 (freier Volltext).
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser: Functional Metabolomics Describes the Yeast Biosynthetic Regulome. In: Cell. Band167, Nr.2, Oktober 2016, S.553–565.e12, doi:10.1016/j.cell.2016.09.007, PMID 27693354, PMC 5055083 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Kate Campbell, Jakob Vowinckel, Markus A. Keller, Markus Ralser: Methionine Metabolism Alters Oxidative Stress Resistance via the Pentose Phosphate Pathway. In: Antioxidants & Redox Signaling. Band24, Nr.10, April 2016, ISSN1523-0864, S.543–547, doi:10.1089/ars.2015.6516, PMID 26596469, PMC 4827311 (freier Volltext).
Markus A Keller, Gabriel Piedrafita, Markus Ralser: The widespread role of non-enzymatic reactions in cellular metabolism. In: Current Opinion in Biotechnology. Band34, August 2015, S.153–161, doi:10.1016/j.copbio.2014.12.020, PMID 25617827, PMC 4728180 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Markus A Keller, Alexandra V Turchyn, Markus Ralser: Non‐enzymatic glycolysis and pentose phosphate pathway‐like reactions in a plausible A rchean ocean. In: Molecular Systems Biology. Band10, Nr.4, April 2014, ISSN1744-4292, S.725, doi:10.1002/msb.20145228, PMID 24771084, PMC 4023395 (freier Volltext).
Christoph B. Messner, Paul C. Driscoll, Gabriel Piedrafita, Michael F. L. De Volder, Markus Ralser: Nonenzymatic gluconeogenesis-like formation of fructose 1,6-bisphosphate in ice. In: Proceedings of the National Academy of Sciences. Band114, Nr.28, 11. Juli 2017, ISSN0027-8424, S.7403–7407, doi:10.1073/pnas.1702274114, PMID 28652321, PMC 5514728 (freier Volltext).
Jason S. L. Yu, Clara Correia-Melo, Francisco Zorrilla, Lucia Herrera-Dominguez, Mary Y. Wu, Johannes Hartl, Kate Campbell, Sonja Blasche, Marco Kreidl, Anna-Sophia Egger, Christoph B. Messner, Vadim Demichev, Anja Freiwald, Michael Mülleder, Michael Howell, Judith Berman, Kiran R. Patil, Mohammad Tauqeer Alam, Markus Ralser: Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance. In: Nature Microbiology. Band7, Nr.4, 21. März 2022, ISSN2058-5276, S.542–555, doi:10.1038/s41564-022-01072-5, PMID 35314781, PMC 8975748 (freier Volltext).
Ziyue Wang, Adam Cryar, Oliver Lemke, Pinkus Tober-Lau, Daniela Ludwig, Elisa Theresa Helbig, Stefan Hippenstiel, Leif-Erik Sander, Daniel Blake, Catherine S. Lane, Rebekah L. Sayers, Christoph Mueller, Johannes Zeiser, StJohn Townsend, Vadim Demichev, Michael Mülleder, Florian Kurth, Ernestas Sirka, Johannes Hartl, Markus Ralser: A multiplex protein panel assay for severity prediction and outcome prognosis in patients with COVID-19: An observational multi-cohort study. In: eClinicalMedicine. Band49, Juli 2022, S.101495, doi:10.1016/j.eclinm.2022.101495, PMID 35702332, PMC 9181834 (freier Volltext) – (elsevier.com [abgerufen am 20. Januar 2023]).
Christoph B. Messner, Vadim Demichev, Nic Bloomfield, Jason S. L. Yu, Matthew White, Marco Kreidl, Anna-Sophia Egger, Anja Freiwald, Gordana Ivosev, Fras Wasim, Aleksej Zelezniak, Linda Jürgens, Norbert Suttorp, Leif Erik Sander, Florian Kurth, Kathryn S. Lilley, Michael Mülleder, Stephen Tate, Markus Ralser: Ultra-fast proteomics with Scanning SWATH. In: Nature Biotechnology. Band39, Nr.7, Juli 2021, ISSN1087-0156, S.846–854, doi:10.1038/s41587-021-00860-4, PMID 33767396.
Vadim Demichev, Christoph B. Messner, Spyros I. Vernardis, Kathryn S. Lilley, Markus Ralser: DIA-NN: neural networks and interference correction enable deep proteome coverage in high throughput. In: Nature Methods. Band17, Nr.1, Januar 2020, ISSN1548-7091, S.41–44, doi:10.1038/s41592-019-0638-x, PMID 31768060, PMC 6949130 (freier Volltext).
Sreejith Jayasree Varma, Enrica Calvani, Nana-Maria Grüning, Christoph B Messner, Nicholas Grayson, Floriana Capuano, Michael Mülleder, Markus Ralser: Global analysis of cytosine and adenine DNA modifications across the tree of life. In: eLife. Band11, 28. Juli 2022, ISSN2050-084X, S.e81002, doi:10.7554/eLife.81002, PMID 35900202, PMC 9333990 (freier Volltext).
Kate Campbell, Jakob Vowinckel, Michael Mülleder, Silke Malmsheimer, Nicola Lawrence, Enrica Calvani, Leonor Miller-Fleming, Mohammad T Alam, Stefan Christen, Markus A Keller, Markus Ralser: Self-establishing communities enable cooperative metabolite exchange in a eukaryote. In: eLife. Band4, 26. Oktober 2015, ISSN2050-084X, S.e09943, doi:10.7554/eLife.09943, PMID 26499891, PMC 4695387 (freier Volltext).
Mohammad Tauqeer Alam, Viridiana Olin-Sandoval, Anna Stincone, Markus A. Keller, Aleksej Zelezniak, Ben F. Luisi, Markus Ralser: The self-inhibitory nature of metabolic networks and its alleviation through compartmentalization. In: Nature Communications. Band8, Nr.1, 10. Juli 2017, ISSN2041-1723, S.16018, doi:10.1038/ncomms16018, PMID 28691704, PMC 5508129 (freier Volltext).
Kate Campbell, Jakob Vowinckel, Markus A. Keller, Markus Ralser: Methionine Metabolism Alters Oxidative Stress Resistance via the Pentose Phosphate Pathway. In: Antioxidants & Redox Signaling. Band24, Nr.10, April 2016, ISSN1523-0864, S.543–547, doi:10.1089/ars.2015.6516, PMID 26596469, PMC 4827311 (freier Volltext).
Markus Ralser, Mirjam M C Wamelink, Simone Latkolik, Erwin E W Jansen, Hans Lehrach, Cornelis Jakobs: Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response. In: Nature Biotechnology. Band27, Nr.7, Juli 2009, ISSN1087-0156, S.604–605, doi:10.1038/nbt0709-604.
Markus A Keller, Alexandra V Turchyn, Markus Ralser: Non‐enzymatic glycolysis and pentose phosphate pathway‐like reactions in a plausible A rchean ocean. In: Molecular Systems Biology. Band10, Nr.4, April 2014, ISSN1744-4292, S.725, doi:10.1002/msb.20145228, PMID 24771084, PMC 4023395 (freier Volltext).
Christoph B. Messner, Paul C. Driscoll, Gabriel Piedrafita, Michael F. L. De Volder, Markus Ralser: Nonenzymatic gluconeogenesis-like formation of fructose 1,6-bisphosphate in ice. In: Proceedings of the National Academy of Sciences. Band114, Nr.28, 11. Juli 2017, ISSN0027-8424, S.7403–7407, doi:10.1073/pnas.1702274114, PMID 28652321, PMC 5514728 (freier Volltext).
Jason S. L. Yu, Clara Correia-Melo, Francisco Zorrilla, Lucia Herrera-Dominguez, Mary Y. Wu, Johannes Hartl, Kate Campbell, Sonja Blasche, Marco Kreidl, Anna-Sophia Egger, Christoph B. Messner, Vadim Demichev, Anja Freiwald, Michael Mülleder, Michael Howell, Judith Berman, Kiran R. Patil, Mohammad Tauqeer Alam, Markus Ralser: Microbial communities form rich extracellular metabolomes that foster metabolic interactions and promote drug tolerance. In: Nature Microbiology. Band7, Nr.4, 21. März 2022, ISSN2058-5276, S.542–555, doi:10.1038/s41564-022-01072-5, PMID 35314781, PMC 8975748 (freier Volltext).