16S ribosomal RNA (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "16S ribosomal RNA" in English language version.

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archive.org

Schmidt TM, Relman DA (1994). "Phylogenetic identification of uncultured pathogens using ribosomal RNA sequences". Bacterial Pathogenesis Part A: Identification and Regulation of Virulence Factors. Methods in Enzymology. Vol. 235. pp. 205–222. doi:10.1016/0076-6879(94)35142-2. ISBN 978-0-12-182136-4. PMID 7520119.

asm.org

aem.asm.org

Weidner S, Arnold W, Puhler A (March 1996). "Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes" (PDF). Applied and Environmental Microbiology. 62 (3): 766–771. Bibcode:1996ApEnM..62..766W. doi:10.1128/AEM.62.3.766-771.1996. PMC 167844. PMID 8975607. Archived (PDF) from the original on 2011-07-15.

biopolis.pt

mimt.bu.biopolis.pt

"MIMt - (Mass Identification of Metagenomics tests)". mimt.bu.biopolis.pt. Retrieved 11 February 2024.

doi.org

Schluenzen F, Tocilj A, Zarivach R, Harms J, Gluehmann M, Janell D, et al. (September 2000). "Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution". Cell. 102 (5): 615–623. doi:10.1016/S0092-8674(00)00084-2. PMID 11007480. S2CID 1024446.
Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proceedings of the National Academy of Sciences of the United States of America. 74 (11): 5088–5090. Bibcode:1977PNAS...74.5088W. doi:10.1073/pnas.74.11.5088. PMC 432104. PMID 270744.
Woese CR, Kandler O, Wheelis ML (June 1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya". Proceedings of the National Academy of Sciences of the United States of America. 87 (12): 4576–4579. Bibcode:1990PNAS...87.4576W. doi:10.1073/pnas.87.12.4576. PMC 54159. PMID 2112744.
Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S (January 2007). "Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies". Applied and Environmental Microbiology. 73 (1): 278–288. Bibcode:2007ApEnM..73..278C. doi:10.1128/AEM.01177-06. PMC 1797146. PMID 17071787.
Czernilofsky AP, Kurland CG, Stöffler G (October 1975). "30S ribosomal proteins associated with the 3'-terminus of 16S RNA". FEBS Letters. 58 (1): 281–284. Bibcode:1975FEBSL..58..281C. doi:10.1016/0014-5793(75)80279-1. PMID 1225593. S2CID 22941368.
Woese CR (June 1987). "Bacterial evolution". Microbiological Reviews. 51 (2): 221–271. doi:10.1128/MR.51.2.221-271.1987. PMC 373105. PMID 2439888.
Weisburg WG, Barns SM, Pelletier DA, Lane DJ (January 1991). "16S ribosomal DNA amplification for phylogenetic study". Journal of Bacteriology. 173 (2): 697–703. doi:10.1128/jb.173.2.697-703.1991. PMC 207061. PMID 1987160.
Coenye T, Vandamme P (November 2003). "Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes". FEMS Microbiology Letters. 228 (1): 45–49. doi:10.1016/S0378-1097(03)00717-1. PMID 14612235.
Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Jay ZJ, Inskeep WP (July 2015). "The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales". Biology Direct. 10 (35): 35. doi:10.1186/s13062-015-0065-6. PMC 4496867. PMID 26156036.
Walker, Sidney P.; Barrett, Maurice; Hogan, Glenn; Flores Bueso, Yensi; Claesson, Marcus J.; Tangney, Mark (2020-10-01). "Non-specific amplification of human DNA is a major challenge for 16S rRNA gene sequence analysis". Scientific Reports. 10 (1): 16356. doi:10.1038/s41598-020-73403-7. ISSN 2045-2322. PMC 7529756. PMID 33004967.
Eden PA, Schmidt TM, Blakemore RP, Pace NR (April 1991). "Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA". International Journal of Systematic Bacteriology. 41 (2): 324–325. doi:10.1099/00207713-41-2-324. PMID 1854644.
James, Greg (15 May 2018). "Universal Bacterial Identification by PCR and DNA Sequencing of 16S rRNA Gene". PCR for Clinical Microbiology. Springer, Dordrecht. pp. 209–214. doi:10.1007/978-90-481-9039-3_28. ISBN 978-90-481-9038-6.
Weidner S, Arnold W, Puhler A (March 1996). "Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes" (PDF). Applied and Environmental Microbiology. 62 (3): 766–771. Bibcode:1996ApEnM..62..766W. doi:10.1128/AEM.62.3.766-771.1996. PMC 167844. PMID 8975607. Archived (PDF) from the original on 2011-07-15.
Park, Changwoo; Kim, Seung Bum; Choi, Sang Ho; Kim, Seil (2021). "Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers". Frontiers in Microbiology. 12. doi:10.3389/fmicb.2021.715500. ISSN 1664-302X. PMC 8552068. PMID 34721319.
Eloe-Fadrosh EA, Ivanova NN, Woyke T, Kyrpides NC (February 2016). "Metagenomics uncovers gaps in amplicon-based detection of microbial diversity". Nature Microbiology. 1 (4): 15032. doi:10.1038/nmicrobiol.2015.32. OSTI 1379258. PMID 27572438. S2CID 27232975.
Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, et al. (July 2011). "The under-recognized dominance of Verrucomicrobia in soil bacterial communities". Soil Biology & Biochemistry. 43 (7): 1450–1455. Bibcode:2011SBiBi..43.1450B. doi:10.1016/j.soilbio.2011.03.012. PMC 3260529. PMID 22267877.
Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW (June 2006). "Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China". Applied and Environmental Microbiology. 72 (6): 3832–3845. Bibcode:2006ApEnM..72.3832J. doi:10.1128/AEM.02869-05. PMC 1489620. PMID 16751487.
Pereira F, Carneiro J, Matthiesen R, van Asch B, Pinto N, Gusmão L, Amorim A (December 2010). "Identification of species by multiplex analysis of variable-length sequences". Nucleic Acids Research. 38 (22): e203. doi:10.1093/nar/gkq865. PMC 3001097. PMID 20923781.
Kolbert CP, Persing DH (June 1999). "Ribosomal DNA sequencing as a tool for identification of bacterial pathogens". Current Opinion in Microbiology. 2 (3): 299–305. doi:10.1016/S1369-5274(99)80052-6. PMID 10383862.
Clarridge JE (October 2004). "Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases". Clinical Microbiology Reviews. 17 (4): 840–62, table of contents. doi:10.1128/CMR.17.4.840-862.2004. PMC 523561. PMID 15489351.
Lu T, Stroot PG, Oerther DB (July 2009). "Reverse transcription of 16S rRNA to monitor ribosome-synthesizing bacterial populations in the environment". Applied and Environmental Microbiology. 75 (13): 4589–4598. Bibcode:2009ApEnM..75.4589L. doi:10.1128/AEM.02970-08. PMC 2704851. PMID 19395563.
Brett PJ, DeShazer D, Woods DE (January 1998). "Burkholderia thailandensis sp. nov., a Burkholderia pseudomallei-like species". International Journal of Systematic Bacteriology. 48 Pt 1 (1): 317–320. doi:10.1099/00207713-48-1-317. PMID 9542103.
Schmidt TM, Relman DA (1994). "Phylogenetic identification of uncultured pathogens using ribosomal RNA sequences". Bacterial Pathogenesis Part A: Identification and Regulation of Virulence Factors. Methods in Enzymology. Vol. 235. pp. 205–222. doi:10.1016/0076-6879(94)35142-2. ISBN 978-0-12-182136-4. PMID 7520119.
Gray JP, Herwig RP (November 1996). "Phylogenetic analysis of the bacterial communities in marine sediments". Applied and Environmental Microbiology. 62 (11): 4049–4059. Bibcode:1996ApEnM..62.4049G. doi:10.1128/AEM.62.11.4049-4059.1996. PMC 168226. PMID 8899989.
Sanschagrin S, Yergeau E (August 2014). "Next-generation sequencing of 16S ribosomal RNA gene amplicons". Journal of Visualized Experiments (90). doi:10.3791/51709. PMC 4828026. PMID 25226019.
Botan, Alexandru; Campisciano, Giuseppina; Zerbato, Verena; Di Bella, Stefano; Simonetti, Omar; Busetti, Marina; Toc, Dan Alexandru; Luzzati, Roberto; Comar, Manola (2024-06-21). "Performance of 16S rRNA Gene Next-Generation Sequencing and the Culture Method in the Detection of Bacteria in Clinical Specimens". Diagnostics. 14 (13): 1318. doi:10.3390/diagnostics14131318. ISSN 2075-4418. PMC 11240331.
Gray MW, Sankoff D, Cedergren RJ (July 1984). "On the evolutionary descent of organisms and organelles: a global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA". Nucleic Acids Research. 12 (14): 5837–5852. doi:10.1093/nar/12.14.5837. PMC 320035. PMID 6462918.
Yang B, Wang Y, Qian PY (March 2016). "Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis". BMC Bioinformatics. 17 (1): 135. doi:10.1186/s12859-016-0992-y. PMC 4802574. PMID 27000765.
Bartram AK, Lynch MD, Stearns JC, Moreno-Hagelsieb G, Neufeld JD (June 2011). "Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads". Applied and Environmental Microbiology. 77 (11): 3846–3852. Bibcode:2011ApEnM..77.3846B. doi:10.1128/AEM.02772-10. PMC 3127616. PMID 21460107.
Burke CM, Darling AE (2016-09-20). "A method for high precision sequencing of near full-length 16S rRNA genes on an Illumina MiSeq". PeerJ. 4: e2492. doi:10.7717/peerj.2492. PMC 5036073. PMID 27688981.
Van de Peer Y, Chapelle S, De Wachter R (September 1996). "A quantitative map of nucleotide substitution rates in bacterial rRNA". Nucleic Acids Research. 24 (17): 3381–3391. doi:10.1093/nar/24.17.3381. PMC 146102. PMID 8811093.
Větrovský T, Baldrian P (2013-02-27). "The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses". PLOS ONE. 8 (2): e57923. Bibcode:2013PLoSO...857923V. doi:10.1371/journal.pone.0057923. PMC 3583900. PMID 23460914.
Chakravorty S, Helb D, Burday M, Connell N, Alland D (May 2007). "A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria". Journal of Microbiological Methods. 69 (2): 330–339. doi:10.1016/j.mimet.2007.02.005. PMC 2562909. PMID 17391789.
Jovel J, Patterson J, Wang W, Hotte N, O'Keefe S, Mitchel T, et al. (2016-01-01). "Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics". Frontiers in Microbiology. 7: 459. doi:10.3389/fmicb.2016.00459. PMC 4837688. PMID 27148170.
Kitahara K, Yasutake Y, Miyazaki K (November 2012). "Mutational robustness of 16S ribosomal RNA, shown by experimental horizontal gene transfer in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 109 (47): 19220–19225. Bibcode:2012PNAS..10919220K. doi:10.1073/pnas.1213609109. PMC 3511107. PMID 23112186.
Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Miyazaki K, Tomariguchi N (August 2019). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. PMC 6677816. PMID 31375780.
Miyazaki, Kentaro; Tomariguchi, Natsuki (2019-08-02). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. ISSN 2045-2322. PMC 6677816. PMID 31375780.
Yarza P, Yilmaz P, Pruesse E, Glöckner FO, Ludwig W, Schleifer KH, et al. (September 2014). "Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences". Nature Reviews. Microbiology. 12 (9): 635–645. doi:10.1038/nrmicro3330. PMID 25118885. S2CID 21895693.
Allard G, Ryan FJ, Jeffery IB, Claesson MJ (October 2015). "SPINGO: a rapid species-classifier for microbial amplicon sequences". BMC Bioinformatics. 16 (1): 324. doi:10.1186/s12859-015-0747-1. PMC 4599320. PMID 26450747.
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. (July 2006). "Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB". Applied and Environmental Microbiology. 72 (7): 5069–5072. Bibcode:2006ApEnM..72.5069D. doi:10.1128/aem.03006-05. PMC 1489311. PMID 16820507.
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, et al. (March 2012). "An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea". The ISME Journal. 6 (3): 610–618. Bibcode:2012ISMEJ...6..610M. doi:10.1038/ismej.2011.139. PMC 3280142. PMID 22134646.

harvard.edu

ui.adsabs.harvard.edu

Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proceedings of the National Academy of Sciences of the United States of America. 74 (11): 5088–5090. Bibcode:1977PNAS...74.5088W. doi:10.1073/pnas.74.11.5088. PMC 432104. PMID 270744.
Woese CR, Kandler O, Wheelis ML (June 1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya". Proceedings of the National Academy of Sciences of the United States of America. 87 (12): 4576–4579. Bibcode:1990PNAS...87.4576W. doi:10.1073/pnas.87.12.4576. PMC 54159. PMID 2112744.
Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S (January 2007). "Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies". Applied and Environmental Microbiology. 73 (1): 278–288. Bibcode:2007ApEnM..73..278C. doi:10.1128/AEM.01177-06. PMC 1797146. PMID 17071787.
Czernilofsky AP, Kurland CG, Stöffler G (October 1975). "30S ribosomal proteins associated with the 3'-terminus of 16S RNA". FEBS Letters. 58 (1): 281–284. Bibcode:1975FEBSL..58..281C. doi:10.1016/0014-5793(75)80279-1. PMID 1225593. S2CID 22941368.
Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Weidner S, Arnold W, Puhler A (March 1996). "Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes" (PDF). Applied and Environmental Microbiology. 62 (3): 766–771. Bibcode:1996ApEnM..62..766W. doi:10.1128/AEM.62.3.766-771.1996. PMC 167844. PMID 8975607. Archived (PDF) from the original on 2011-07-15.
Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, et al. (July 2011). "The under-recognized dominance of Verrucomicrobia in soil bacterial communities". Soil Biology & Biochemistry. 43 (7): 1450–1455. Bibcode:2011SBiBi..43.1450B. doi:10.1016/j.soilbio.2011.03.012. PMC 3260529. PMID 22267877.
Jiang H, Dong H, Zhang G, Yu B, Chapman LR, Fields MW (June 2006). "Microbial diversity in water and sediment of Lake Chaka, an athalassohaline lake in northwestern China". Applied and Environmental Microbiology. 72 (6): 3832–3845. Bibcode:2006ApEnM..72.3832J. doi:10.1128/AEM.02869-05. PMC 1489620. PMID 16751487.
Lu T, Stroot PG, Oerther DB (July 2009). "Reverse transcription of 16S rRNA to monitor ribosome-synthesizing bacterial populations in the environment". Applied and Environmental Microbiology. 75 (13): 4589–4598. Bibcode:2009ApEnM..75.4589L. doi:10.1128/AEM.02970-08. PMC 2704851. PMID 19395563.
Gray JP, Herwig RP (November 1996). "Phylogenetic analysis of the bacterial communities in marine sediments". Applied and Environmental Microbiology. 62 (11): 4049–4059. Bibcode:1996ApEnM..62.4049G. doi:10.1128/AEM.62.11.4049-4059.1996. PMC 168226. PMID 8899989.
Bartram AK, Lynch MD, Stearns JC, Moreno-Hagelsieb G, Neufeld JD (June 2011). "Generation of multimillion-sequence 16S rRNA gene libraries from complex microbial communities by assembling paired-end illumina reads". Applied and Environmental Microbiology. 77 (11): 3846–3852. Bibcode:2011ApEnM..77.3846B. doi:10.1128/AEM.02772-10. PMC 3127616. PMID 21460107.
Větrovský T, Baldrian P (2013-02-27). "The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses". PLOS ONE. 8 (2): e57923. Bibcode:2013PLoSO...857923V. doi:10.1371/journal.pone.0057923. PMC 3583900. PMID 23460914.
Kitahara K, Yasutake Y, Miyazaki K (November 2012). "Mutational robustness of 16S ribosomal RNA, shown by experimental horizontal gene transfer in Escherichia coli". Proceedings of the National Academy of Sciences of the United States of America. 109 (47): 19220–19225. Bibcode:2012PNAS..10919220K. doi:10.1073/pnas.1213609109. PMC 3511107. PMID 23112186.
Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Miyazaki K, Tomariguchi N (August 2019). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. PMC 6677816. PMID 31375780.
Miyazaki, Kentaro; Tomariguchi, Natsuki (2019-08-02). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. ISSN 2045-2322. PMC 6677816. PMID 31375780.
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. (July 2006). "Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB". Applied and Environmental Microbiology. 72 (7): 5069–5072. Bibcode:2006ApEnM..72.5069D. doi:10.1128/aem.03006-05. PMC 1489311. PMID 16820507.
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, et al. (March 2012). "An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea". The ISME Journal. 6 (3): 610–618. Bibcode:2012ISMEJ...6..610M. doi:10.1038/ismej.2011.139. PMC 3280142. PMID 22134646.

hmpdacc.org

"Human Microbiome Project DACC - Home". www.hmpdacc.org. Archived from the original on 2010-10-30.

lutzonilab.net

"Primers, 16S ribosomal DNA - François Lutzoni's Lab". lutzonilab.net. Archived from the original on 2012-12-27.

nih.gov

pubmed.ncbi.nlm.nih.gov

Schluenzen F, Tocilj A, Zarivach R, Harms J, Gluehmann M, Janell D, et al. (September 2000). "Structure of functionally activated small ribosomal subunit at 3.3 angstroms resolution". Cell. 102 (5): 615–623. doi:10.1016/S0092-8674(00)00084-2. PMID 11007480. S2CID 1024446.
Woese CR, Fox GE (November 1977). "Phylogenetic structure of the prokaryotic domain: the primary kingdoms". Proceedings of the National Academy of Sciences of the United States of America. 74 (11): 5088–5090. Bibcode:1977PNAS...74.5088W. doi:10.1073/pnas.74.11.5088. PMC 432104. PMID 270744.
Woese CR, Kandler O, Wheelis ML (June 1990). "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya". Proceedings of the National Academy of Sciences of the United States of America. 87 (12): 4576–4579. Bibcode:1990PNAS...87.4576W. doi:10.1073/pnas.87.12.4576. PMC 54159. PMID 2112744.
Case RJ, Boucher Y, Dahllöf I, Holmström C, Doolittle WF, Kjelleberg S (January 2007). "Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies". Applied and Environmental Microbiology. 73 (1): 278–288. Bibcode:2007ApEnM..73..278C. doi:10.1128/AEM.01177-06. PMC 1797146. PMID 17071787.
Czernilofsky AP, Kurland CG, Stöffler G (October 1975). "30S ribosomal proteins associated with the 3'-terminus of 16S RNA". FEBS Letters. 58 (1): 281–284. Bibcode:1975FEBSL..58..281C. doi:10.1016/0014-5793(75)80279-1. PMID 1225593. S2CID 22941368.
Woese CR (June 1987). "Bacterial evolution". Microbiological Reviews. 51 (2): 221–271. doi:10.1128/MR.51.2.221-271.1987. PMC 373105. PMID 2439888.
Weisburg WG, Barns SM, Pelletier DA, Lane DJ (January 1991). "16S ribosomal DNA amplification for phylogenetic study". Journal of Bacteriology. 173 (2): 697–703. doi:10.1128/jb.173.2.697-703.1991. PMC 207061. PMID 1987160.
Coenye T, Vandamme P (November 2003). "Intragenomic heterogeneity between multiple 16S ribosomal RNA operons in sequenced bacterial genomes". FEMS Microbiology Letters. 228 (1): 45–49. doi:10.1016/S0378-1097(03)00717-1. PMID 14612235.
Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Jay ZJ, Inskeep WP (July 2015). "The distribution, diversity, and importance of 16S rRNA gene introns in the order Thermoproteales". Biology Direct. 10 (35): 35. doi:10.1186/s13062-015-0065-6. PMC 4496867. PMID 26156036.
Walker, Sidney P.; Barrett, Maurice; Hogan, Glenn; Flores Bueso, Yensi; Claesson, Marcus J.; Tangney, Mark (2020-10-01). "Non-specific amplification of human DNA is a major challenge for 16S rRNA gene sequence analysis". Scientific Reports. 10 (1): 16356. doi:10.1038/s41598-020-73403-7. ISSN 2045-2322. PMC 7529756. PMID 33004967.
Eden PA, Schmidt TM, Blakemore RP, Pace NR (April 1991). "Phylogenetic analysis of Aquaspirillum magnetotacticum using polymerase chain reaction-amplified 16S rRNA-specific DNA". International Journal of Systematic Bacteriology. 41 (2): 324–325. doi:10.1099/00207713-41-2-324. PMID 1854644.
Weidner S, Arnold W, Puhler A (March 1996). "Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes" (PDF). Applied and Environmental Microbiology. 62 (3): 766–771. Bibcode:1996ApEnM..62..766W. doi:10.1128/AEM.62.3.766-771.1996. PMC 167844. PMID 8975607. Archived (PDF) from the original on 2011-07-15.
Park, Changwoo; Kim, Seung Bum; Choi, Sang Ho; Kim, Seil (2021). "Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers". Frontiers in Microbiology. 12. doi:10.3389/fmicb.2021.715500. ISSN 1664-302X. PMC 8552068. PMID 34721319.
Eloe-Fadrosh EA, Ivanova NN, Woyke T, Kyrpides NC (February 2016). "Metagenomics uncovers gaps in amplicon-based detection of microbial diversity". Nature Microbiology. 1 (4): 15032. doi:10.1038/nmicrobiol.2015.32. OSTI 1379258. PMID 27572438. S2CID 27232975.
Bergmann GT, Bates ST, Eilers KG, Lauber CL, Caporaso JG, Walters WA, et al. (July 2011). "The under-recognized dominance of Verrucomicrobia in soil bacterial communities". Soil Biology & Biochemistry. 43 (7): 1450–1455. Bibcode:2011SBiBi..43.1450B. doi:10.1016/j.soilbio.2011.03.012. PMC 3260529. PMID 22267877.
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Miyazaki, Kentaro; Tomariguchi, Natsuki (2019-08-02). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. ISSN 2045-2322. PMC 6677816. PMID 31375780.
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Clarridge JE (October 2004). "Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases". Clinical Microbiology Reviews. 17 (4): 840–62, table of contents. doi:10.1128/CMR.17.4.840-862.2004. PMC 523561. PMID 15489351.
Lu T, Stroot PG, Oerther DB (July 2009). "Reverse transcription of 16S rRNA to monitor ribosome-synthesizing bacterial populations in the environment". Applied and Environmental Microbiology. 75 (13): 4589–4598. Bibcode:2009ApEnM..75.4589L. doi:10.1128/AEM.02970-08. PMC 2704851. PMID 19395563.
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Yang B, Wang Y, Qian PY (March 2016). "Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis". BMC Bioinformatics. 17 (1): 135. doi:10.1186/s12859-016-0992-y. PMC 4802574. PMID 27000765.
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Větrovský T, Baldrian P (2013-02-27). "The variability of the 16S rRNA gene in bacterial genomes and its consequences for bacterial community analyses". PLOS ONE. 8 (2): e57923. Bibcode:2013PLoSO...857923V. doi:10.1371/journal.pone.0057923. PMC 3583900. PMID 23460914.
Chakravorty S, Helb D, Burday M, Connell N, Alland D (May 2007). "A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria". Journal of Microbiological Methods. 69 (2): 330–339. doi:10.1016/j.mimet.2007.02.005. PMC 2562909. PMID 17391789.
Jovel J, Patterson J, Wang W, Hotte N, O'Keefe S, Mitchel T, et al. (2016-01-01). "Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics". Frontiers in Microbiology. 7: 459. doi:10.3389/fmicb.2016.00459. PMC 4837688. PMID 27148170.
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Tsukuda M, Kitahara K, Miyazaki K (August 2017). "Comparative RNA function analysis reveals high functional similarity between distantly related bacterial 16 S rRNAs". Scientific Reports. 7 (1): 9993. Bibcode:2017NatSR...7.9993T. doi:10.1038/s41598-017-10214-3. PMC 5577257. PMID 28855596.
Miyazaki K, Tomariguchi N (August 2019). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. PMC 6677816. PMID 31375780.
Miyazaki, Kentaro; Tomariguchi, Natsuki (2019-08-02). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. ISSN 2045-2322. PMC 6677816. PMID 31375780.
Allard G, Ryan FJ, Jeffery IB, Claesson MJ (October 2015). "SPINGO: a rapid species-classifier for microbial amplicon sequences". BMC Bioinformatics. 16 (1): 324. doi:10.1186/s12859-015-0747-1. PMC 4599320. PMID 26450747.
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, et al. (July 2006). "Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB". Applied and Environmental Microbiology. 72 (7): 5069–5072. Bibcode:2006ApEnM..72.5069D. doi:10.1128/aem.03006-05. PMC 1489311. PMID 16820507.
McDonald D, Price MN, Goodrich J, Nawrocki EP, DeSantis TZ, Probst A, et al. (March 2012). "An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea". The ISME Journal. 6 (3): 610–618. Bibcode:2012ISMEJ...6..610M. doi:10.1038/ismej.2011.139. PMC 3280142. PMID 22134646.

osti.gov

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Weidner S, Arnold W, Puhler A (March 1996). "Diversity of uncultured microorganisms associated with the seagrass Halophila stipulacea estimated by restriction fragment length polymorphism analysis of PCR-amplified 16S rRNA genes" (PDF). Applied and Environmental Microbiology. 62 (3): 766–771. Bibcode:1996ApEnM..62..766W. doi:10.1128/AEM.62.3.766-771.1996. PMC 167844. PMID 8975607. Archived (PDF) from the original on 2011-07-15.

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Walker, Sidney P.; Barrett, Maurice; Hogan, Glenn; Flores Bueso, Yensi; Claesson, Marcus J.; Tangney, Mark (2020-10-01). "Non-specific amplification of human DNA is a major challenge for 16S rRNA gene sequence analysis". Scientific Reports. 10 (1): 16356. doi:10.1038/s41598-020-73403-7. ISSN 2045-2322. PMC 7529756. PMID 33004967.
Park, Changwoo; Kim, Seung Bum; Choi, Sang Ho; Kim, Seil (2021). "Comparison of 16S rRNA Gene Based Microbial Profiling Using Five Next-Generation Sequencers and Various Primers". Frontiers in Microbiology. 12. doi:10.3389/fmicb.2021.715500. ISSN 1664-302X. PMC 8552068. PMID 34721319.
Botan, Alexandru; Campisciano, Giuseppina; Zerbato, Verena; Di Bella, Stefano; Simonetti, Omar; Busetti, Marina; Toc, Dan Alexandru; Luzzati, Roberto; Comar, Manola (2024-06-21). "Performance of 16S rRNA Gene Next-Generation Sequencing and the Culture Method in the Detection of Bacteria in Clinical Specimens". Diagnostics. 14 (13): 1318. doi:10.3390/diagnostics14131318. ISSN 2075-4418. PMC 11240331.
Miyazaki, Kentaro; Tomariguchi, Natsuki (2019-08-02). "Occurrence of randomly recombined functional 16S rRNA genes in Thermus thermophilus suggests genetic interoperability and promiscuity of bacterial 16S rRNAs". Scientific Reports. 9 (1): 11233. Bibcode:2019NatSR...911233M. doi:10.1038/s41598-019-47807-z. ISSN 2045-2322. PMC 6677816. PMID 31375780.