5-Hydroxymethylcytosine (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "5-Hydroxymethylcytosine" in English language version.

refsWebsite

Global rank English rank

37nih.gov

4^th place

22doi.org

2^nd place

7harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

1popsci.com

2,941^st place

2,021^st place

1worldcat.org

5^th place

1web.archive.org

1^st place

1epigenie.com

low place

1github.com

383^rd place

320^th place

doi.org

Warren RA (1980). "Modified bases in bacteriophage DNAs". Annu. Rev. Microbiol. 34: 137–158. doi:10.1146/annurev.mi.34.100180.001033. PMID 7002022.
Wyatt GR, Cohen SS (December 1952). "A new pyrimidine base from bacteriophage nucleic acids". Nature. 170 (4338): 1072–1073. Bibcode:1952Natur.170.1072W. doi:10.1038/1701072a0. PMID 13013321. S2CID 4277592.
Kriaucionis S, Heintz N (May 2009). "The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain". Science. 324 (5929): 929–930. Bibcode:2009Sci...324..929K. doi:10.1126/science.1169786. PMC 3263819. PMID 19372393.
Tahiliani M, et al. (May 2009). "Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1" (PDF). Science. 324 (5929): 930–935. Bibcode:2009Sci...324..930T. doi:10.1126/science.1170116. PMC 2715015. PMID 19372391.
Münzel M, et al. (July 2010). "Quantification of the Sixth DNA Base Hydroxymethylcytosine in the Brain". Angew. Chem. Int. Ed. 49 (31): 5375–5377. doi:10.1002/anie.201002033. PMID 20583021.
Szwagierczak A, et al. (October 2010). "Sensitive Enzymatic Quantification of 5-Hydroxymethylcytosine in Genomic DNA". Nucleic Acids Res. 38 (19): e181. doi:10.1093/nar/gkq684. PMC 2965258. PMID 20685817.
Globisch D, et al. (December 2010). Croft AK (ed.). "Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates". PLOS ONE. 5 (12): e15367. Bibcode:2010PLoSO...515367G. doi:10.1371/journal.pone.0015367. PMC 3009720. PMID 21203455.
Song C-X, et al. (December 2010). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.
Guo JU, Su Y, Zhong C, Ming Gl, Song H (1 April 2011). "Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain". Cell. 145 (3): 423–434. doi:10.1016/j.cell.2011.03.022. PMC 3088758. PMID 21496894.
Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down T, Surani MA (2012-12-06). "Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine". Science. 339 (6118): 448–52. doi:10.1126/science.1229277. PMC 3847602. PMID 23223451.
Pfaffeneder T, Hackner B, Truss M, Münzel M, Müller M, Deiml CA, Hagemeier C, Carell T (30 June 2011). "The Discovery of 5-Formylcytosine in Embryonic Stem Cell DNA". Angew. Chem. Int. Ed. 50 (31): 7008–7012. doi:10.1002/anie.201103899. PMID 21721093.
Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R (April 2012). "Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity". Nucleic Acids Research. 40 (8): 3364–3377. doi:10.1093/nar/gkr1253. PMC 3333871. PMID 22210859.
Teif V, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T, Rippe K (8 May 2014). "Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development". Genome Research. 24 (8): 1285–1295. doi:10.1101/gr.164418.113. PMC 4120082. PMID 24812327.
Mellén M, Ayata P, Heintz N (Sep 2017). "5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes". Proc Natl Acad Sci U S A. 114 (37): E7812 – E7821. Bibcode:2017PNAS..114E7812M. doi:10.1073/pnas.1708044114. PMC 5604027. PMID 28847947.
Bryson AL, Hwang Y, Sherrill-Mix S, Wu GD, Lewis JD, Black L, Clark TA, Bushman FD, Adhya S (16 June 2015). "Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9". mBio. 6 (3): e00648. doi:10.1128/mBio.00648-15. PMC 4471564. PMID 26081634.
Borgaro JG, Zhu Z (April 2013). "Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases". Nucleic Acids Research. 41 (7): 4198–206. doi:10.1093/nar/gkt102. PMC 3627594. PMID 23482393.
Iyer LM, et al. (June 2009). "Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids". Cell Cycle. 8 (11): 1698–1710. doi:10.4161/cc.8.11.8580. PMC 2995806. PMID 19411852.
Penn NW, Suwalski R, O'Riley C, Bojanowski K, Yura R (February 1972). "The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid". Biochem. J. 126 (4): 781–790. doi:10.1042/bj1260781. PMC 1178489. PMID 4538516.
Kothari R, Shankar V (May 1976). "5-Methylcytosine content in the vertebrate deoxyribonucleic acids: species specificity". Journal of Molecular Evolution. 7 (4): 325–329. Bibcode:1976JMolE...7..325K. doi:10.1007/BF01743628. ISSN 0022-2844. PMID 933178. S2CID 19957320.
Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li XK, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C (June 2012). "Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome". Cell. 149 (6): 1368–1380. doi:10.1016/j.cell.2012.04.027. PMC 3589129. PMID 22608086.
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, Hicks LM, Lahn BT, Jin P, He C (2011). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.
Erlitzki N, Kohli RM (2024). "An Overview of Global, Local, and Base-Resolution Methods for the Detection of 5-Hydroxymethylcytosine in Genomic DNA". Epigenome Editing. Vol. 2842. pp. 325–352. doi:10.1007/978-1-0716-4051-7_17.

epigenie.com

"5 hydroxymethylcytosine analysis techniques". Archived from the original on 2011-07-10. Retrieved 2011-01-14.

github.com

"Added CpG (min, prom, and min 5mC+5hmC) models and some minor cleanup". nanoporetech / rerio. GitHub. Retrieved 18 June 2020.

harvard.edu

ui.adsabs.harvard.edu

Wyatt GR, Cohen SS (December 1952). "A new pyrimidine base from bacteriophage nucleic acids". Nature. 170 (4338): 1072–1073. Bibcode:1952Natur.170.1072W. doi:10.1038/1701072a0. PMID 13013321. S2CID 4277592.
Kriaucionis S, Heintz N (May 2009). "The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain". Science. 324 (5929): 929–930. Bibcode:2009Sci...324..929K. doi:10.1126/science.1169786. PMC 3263819. PMID 19372393.
Tahiliani M, et al. (May 2009). "Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1" (PDF). Science. 324 (5929): 930–935. Bibcode:2009Sci...324..930T. doi:10.1126/science.1170116. PMC 2715015. PMID 19372391.
Globisch D, et al. (December 2010). Croft AK (ed.). "Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates". PLOS ONE. 5 (12): e15367. Bibcode:2010PLoSO...515367G. doi:10.1371/journal.pone.0015367. PMC 3009720. PMID 21203455.
Mellén M, Ayata P, Heintz N (Sep 2017). "5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes". Proc Natl Acad Sci U S A. 114 (37): E7812 – E7821. Bibcode:2017PNAS..114E7812M. doi:10.1073/pnas.1708044114. PMC 5604027. PMID 28847947.
Kothari R, Shankar V (May 1976). "5-Methylcytosine content in the vertebrate deoxyribonucleic acids: species specificity". Journal of Molecular Evolution. 7 (4): 325–329. Bibcode:1976JMolE...7..325K. doi:10.1007/BF01743628. ISSN 0022-2844. PMID 933178. S2CID 19957320.

dash.harvard.edu

Tahiliani M, et al. (May 2009). "Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1" (PDF). Science. 324 (5929): 930–935. Bibcode:2009Sci...324..930T. doi:10.1126/science.1170116. PMC 2715015. PMID 19372391.

nih.gov

pubmed.ncbi.nlm.nih.gov

Warren RA (1980). "Modified bases in bacteriophage DNAs". Annu. Rev. Microbiol. 34: 137–158. doi:10.1146/annurev.mi.34.100180.001033. PMID 7002022.
Wyatt GR, Cohen SS (December 1952). "A new pyrimidine base from bacteriophage nucleic acids". Nature. 170 (4338): 1072–1073. Bibcode:1952Natur.170.1072W. doi:10.1038/1701072a0. PMID 13013321. S2CID 4277592.
Kriaucionis S, Heintz N (May 2009). "The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain". Science. 324 (5929): 929–930. Bibcode:2009Sci...324..929K. doi:10.1126/science.1169786. PMC 3263819. PMID 19372393.
Tahiliani M, et al. (May 2009). "Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1" (PDF). Science. 324 (5929): 930–935. Bibcode:2009Sci...324..930T. doi:10.1126/science.1170116. PMC 2715015. PMID 19372391.
Münzel M, et al. (July 2010). "Quantification of the Sixth DNA Base Hydroxymethylcytosine in the Brain". Angew. Chem. Int. Ed. 49 (31): 5375–5377. doi:10.1002/anie.201002033. PMID 20583021.
Szwagierczak A, et al. (October 2010). "Sensitive Enzymatic Quantification of 5-Hydroxymethylcytosine in Genomic DNA". Nucleic Acids Res. 38 (19): e181. doi:10.1093/nar/gkq684. PMC 2965258. PMID 20685817.
Globisch D, et al. (December 2010). Croft AK (ed.). "Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates". PLOS ONE. 5 (12): e15367. Bibcode:2010PLoSO...515367G. doi:10.1371/journal.pone.0015367. PMC 3009720. PMID 21203455.
Song C-X, et al. (December 2010). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.
Guo JU, Su Y, Zhong C, Ming Gl, Song H (1 April 2011). "Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain". Cell. 145 (3): 423–434. doi:10.1016/j.cell.2011.03.022. PMC 3088758. PMID 21496894.
Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down T, Surani MA (2012-12-06). "Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine". Science. 339 (6118): 448–52. doi:10.1126/science.1229277. PMC 3847602. PMID 23223451.
Pfaffeneder T, Hackner B, Truss M, Münzel M, Müller M, Deiml CA, Hagemeier C, Carell T (30 June 2011). "The Discovery of 5-Formylcytosine in Embryonic Stem Cell DNA". Angew. Chem. Int. Ed. 50 (31): 7008–7012. doi:10.1002/anie.201103899. PMID 21721093.
Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R (April 2012). "Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity". Nucleic Acids Research. 40 (8): 3364–3377. doi:10.1093/nar/gkr1253. PMC 3333871. PMID 22210859.
Teif V, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T, Rippe K (8 May 2014). "Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development". Genome Research. 24 (8): 1285–1295. doi:10.1101/gr.164418.113. PMC 4120082. PMID 24812327.
Mellén M, Ayata P, Heintz N (Sep 2017). "5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes". Proc Natl Acad Sci U S A. 114 (37): E7812 – E7821. Bibcode:2017PNAS..114E7812M. doi:10.1073/pnas.1708044114. PMC 5604027. PMID 28847947.
Bryson AL, Hwang Y, Sherrill-Mix S, Wu GD, Lewis JD, Black L, Clark TA, Bushman FD, Adhya S (16 June 2015). "Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9". mBio. 6 (3): e00648. doi:10.1128/mBio.00648-15. PMC 4471564. PMID 26081634.
Borgaro JG, Zhu Z (April 2013). "Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases". Nucleic Acids Research. 41 (7): 4198–206. doi:10.1093/nar/gkt102. PMC 3627594. PMID 23482393.
Iyer LM, et al. (June 2009). "Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids". Cell Cycle. 8 (11): 1698–1710. doi:10.4161/cc.8.11.8580. PMC 2995806. PMID 19411852.
Penn NW, Suwalski R, O'Riley C, Bojanowski K, Yura R (February 1972). "The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid". Biochem. J. 126 (4): 781–790. doi:10.1042/bj1260781. PMC 1178489. PMID 4538516.
Kothari R, Shankar V (May 1976). "5-Methylcytosine content in the vertebrate deoxyribonucleic acids: species specificity". Journal of Molecular Evolution. 7 (4): 325–329. Bibcode:1976JMolE...7..325K. doi:10.1007/BF01743628. ISSN 0022-2844. PMID 933178. S2CID 19957320.
Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li XK, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C (June 2012). "Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome". Cell. 149 (6): 1368–1380. doi:10.1016/j.cell.2012.04.027. PMC 3589129. PMID 22608086.
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, Hicks LM, Lahn BT, Jin P, He C (2011). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.

ncbi.nlm.nih.gov

Kriaucionis S, Heintz N (May 2009). "The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain". Science. 324 (5929): 929–930. Bibcode:2009Sci...324..929K. doi:10.1126/science.1169786. PMC 3263819. PMID 19372393.
Tahiliani M, et al. (May 2009). "Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1" (PDF). Science. 324 (5929): 930–935. Bibcode:2009Sci...324..930T. doi:10.1126/science.1170116. PMC 2715015. PMID 19372391.
Szwagierczak A, et al. (October 2010). "Sensitive Enzymatic Quantification of 5-Hydroxymethylcytosine in Genomic DNA". Nucleic Acids Res. 38 (19): e181. doi:10.1093/nar/gkq684. PMC 2965258. PMID 20685817.
Globisch D, et al. (December 2010). Croft AK (ed.). "Tissue Distribution of 5-Hydroxymethylcytosine and Search for Active Demethylation Intermediates". PLOS ONE. 5 (12): e15367. Bibcode:2010PLoSO...515367G. doi:10.1371/journal.pone.0015367. PMC 3009720. PMID 21203455.
Song C-X, et al. (December 2010). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.
Guo JU, Su Y, Zhong C, Ming Gl, Song H (1 April 2011). "Hydroxylation of 5-Methylcytosine by TET1 Promotes Active DNA Demethylation in the Adult Brain". Cell. 145 (3): 423–434. doi:10.1016/j.cell.2011.03.022. PMC 3088758. PMID 21496894.
Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down T, Surani MA (2012-12-06). "Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine". Science. 339 (6118): 448–52. doi:10.1126/science.1229277. PMC 3847602. PMID 23223451.
Freudenberg JM, Ghosh S, Lackford BL, Yellaboina S, Zheng X, Li R, Cuddapah S, Wade PA, Hu G, Jothi R (April 2012). "Acute depletion of Tet1-dependent 5-hydroxymethylcytosine levels impairs LIF/Stat3 signaling and results in loss of embryonic stem cell identity". Nucleic Acids Research. 40 (8): 3364–3377. doi:10.1093/nar/gkr1253. PMC 3333871. PMID 22210859.
Teif V, Beshnova DA, Vainshtein Y, Marth C, Mallm JP, Höfer T, Rippe K (8 May 2014). "Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development". Genome Research. 24 (8): 1285–1295. doi:10.1101/gr.164418.113. PMC 4120082. PMID 24812327.
Mellén M, Ayata P, Heintz N (Sep 2017). "5-hydroxymethylcytosine accumulation in postmitotic neurons results in functional demethylation of expressed genes". Proc Natl Acad Sci U S A. 114 (37): E7812 – E7821. Bibcode:2017PNAS..114E7812M. doi:10.1073/pnas.1708044114. PMC 5604027. PMID 28847947.
Bryson AL, Hwang Y, Sherrill-Mix S, Wu GD, Lewis JD, Black L, Clark TA, Bushman FD, Adhya S (16 June 2015). "Covalent Modification of Bacteriophage T4 DNA Inhibits CRISPR-Cas9". mBio. 6 (3): e00648. doi:10.1128/mBio.00648-15. PMC 4471564. PMID 26081634.
Borgaro JG, Zhu Z (April 2013). "Characterization of the 5-hydroxymethylcytosine-specific DNA restriction endonucleases". Nucleic Acids Research. 41 (7): 4198–206. doi:10.1093/nar/gkt102. PMC 3627594. PMID 23482393.
Iyer LM, et al. (June 2009). "Prediction of novel families of enzymes involved in oxidative and other complex modifications of bases in nucleic acids". Cell Cycle. 8 (11): 1698–1710. doi:10.4161/cc.8.11.8580. PMC 2995806. PMID 19411852.
Penn NW, Suwalski R, O'Riley C, Bojanowski K, Yura R (February 1972). "The presence of 5-hydroxymethylcytosine in animal deoxyribonucleic acid". Biochem. J. 126 (4): 781–790. doi:10.1042/bj1260781. PMC 1178489. PMID 4538516.
Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li XK, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C (June 2012). "Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome". Cell. 149 (6): 1368–1380. doi:10.1016/j.cell.2012.04.027. PMC 3589129. PMID 22608086.
Song CX, Szulwach KE, Fu Y, Dai Q, Yi C, Li X, Li Y, Chen CH, Zhang W, Jian X, Wang J, Zhang L, Looney TJ, Zhang B, Godley LA, Hicks LM, Lahn BT, Jin P, He C (2011). "Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine". Nat. Biotechnol. 29 (1): 68–72. doi:10.1038/nbt.1732. PMC 3107705. PMID 21151123.

popsci.com

A, T, G, C and What?, popsci.com

semanticscholar.org

api.semanticscholar.org

Wyatt GR, Cohen SS (December 1952). "A new pyrimidine base from bacteriophage nucleic acids". Nature. 170 (4338): 1072–1073. Bibcode:1952Natur.170.1072W. doi:10.1038/1701072a0. PMID 13013321. S2CID 4277592.
Kothari R, Shankar V (May 1976). "5-Methylcytosine content in the vertebrate deoxyribonucleic acids: species specificity". Journal of Molecular Evolution. 7 (4): 325–329. Bibcode:1976JMolE...7..325K. doi:10.1007/BF01743628. ISSN 0022-2844. PMID 933178. S2CID 19957320.

web.archive.org

"5 hydroxymethylcytosine analysis techniques". Archived from the original on 2011-07-10. Retrieved 2011-01-14.

worldcat.org

search.worldcat.org

Kothari R, Shankar V (May 1976). "5-Methylcytosine content in the vertebrate deoxyribonucleic acids: species specificity". Journal of Molecular Evolution. 7 (4): 325–329. Bibcode:1976JMolE...7..325K. doi:10.1007/BF01743628. ISSN 0022-2844. PMID 933178. S2CID 19957320.