AMBER (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "AMBER" in English language version.

refsWebsite

Global rank English rank

8doi.org

2^nd place

8nih.gov

4^th place

2ambermd.org

low place

2worldcat.org

5^th place

1wiley.com

222^nd place

297^th place

1psu.edu

207^th place

136^th place

1upol.cz

low place

ambermd.org

doi.org

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER : Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. doi:10.1002/jcc.540020311. ISSN 0192-8651.
Pearlman, David A.; Case, David A.; Caldwell, James W.; Ross, Wilson S.; Cheatham, Thomas E.; DeBolt, Steve; Ferguson, David; Seibel, George; Kollman, Peter (1995). "AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules". Computer Physics Communications. 91 (1–3): 1–41. doi:10.1016/0010-4655(95)00041-d. ISSN 0010-4655.
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995). "A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules". J. Am. Chem. Soc. 117 (19): 5179–5197. CiteSeerX 10.1.1.323.4450. doi:10.1021/ja00124a002.
He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of chemical physics. 153 (11): 114502. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.
Khoury GA, Bhatia N, Floudas CA (2014). "Hydration free energies calculated using the AMBER ff03 charge model for natural and unnatural amino acids and multiple water models". Computers & Chemical Engineering. 71: 745–752. doi:10.1016/j.compchemeng.2014.07.017.

nih.gov

ncbi.nlm.nih.gov

He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of chemical physics. 153 (11): 114502. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.

pubmed.ncbi.nlm.nih.gov

He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of chemical physics. 153 (11): 114502. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.

psu.edu

citeseerx.ist.psu.edu

Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995). "A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules". J. Am. Chem. Soc. 117 (19): 5179–5197. CiteSeerX 10.1.1.323.4450. doi:10.1021/ja00124a002.

upol.cz

fch.upol.cz

"OL Force Field Refinement for RNA and DNA Simulations". fch.upol.cz.

wiley.com

onlinelibrary.wiley.com

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER : Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. doi:10.1002/jcc.540020311. ISSN 0192-8651.

worldcat.org

search.worldcat.org

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER : Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. doi:10.1002/jcc.540020311. ISSN 0192-8651.
Pearlman, David A.; Case, David A.; Caldwell, James W.; Ross, Wilson S.; Cheatham, Thomas E.; DeBolt, Steve; Ferguson, David; Seibel, George; Kollman, Peter (1995). "AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules". Computer Physics Communications. 91 (1–3): 1–41. doi:10.1016/0010-4655(95)00041-d. ISSN 0010-4655.