AMBER (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "AMBER" in English language version.

Last modified: 15:16:25, 12 August 2026 (UTC)

Ref.Un. Ref.Website

Global rank English rank

88doi.org

2^nd place

88nih.gov

5^th place

55adsabs.harvard.edu

14^th place

9^th place

22ambermd.org

low place

22worldcat.org

4^th place

11wiley.com

150^th place

174^th place

11upol.cz

low place

adsabs.harvard.edu (Global: 14^th place; English: 9^th place)

ui.adsabs.harvard.edu

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. Bibcode:1981JCoCh...2..287W. doi:10.1002/jcc.540020311. ISSN 0192-8651.
Pearlman, David A.; Case, David A.; Caldwell, James W.; Ross, Wilson S.; Cheatham, Thomas E.; DeBolt, Steve; Ferguson, David; Seibel, George; Kollman, Peter (1995). "AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules". Computer Physics Communications. 91 (1–3): 1–41. Bibcode:1995CoPhC..91....1P. doi:10.1016/0010-4655(95)00041-d. ISSN 0010-4655.
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995). "A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules". J. Am. Chem. Soc. 117 (19): 5179–5197. Bibcode:1995JAChS.117.5179C. doi:10.1021/ja00124a002.
He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of Chemical Physics. 153 (11): 114502. Bibcode:2020JChPh.153k4502H. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. Bibcode:2014JCTC...10..865D. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.

ambermd.org (Global: low place; English: low place)

doi.org (Global: 2^nd place; English: 2^nd place)

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. Bibcode:1981JCoCh...2..287W. doi:10.1002/jcc.540020311. ISSN 0192-8651.
Pearlman, David A.; Case, David A.; Caldwell, James W.; Ross, Wilson S.; Cheatham, Thomas E.; DeBolt, Steve; Ferguson, David; Seibel, George; Kollman, Peter (1995). "AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules". Computer Physics Communications. 91 (1–3): 1–41. Bibcode:1995CoPhC..91....1P. doi:10.1016/0010-4655(95)00041-d. ISSN 0010-4655.
Cornell WD, Cieplak P, Bayly CI, Gould IR, Merz KM Jr, Ferguson DM, Spellmeyer DC, Fox T, Caldwell JW, Kollman PA (1995). "A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules". J. Am. Chem. Soc. 117 (19): 5179–5197. Bibcode:1995JAChS.117.5179C. doi:10.1021/ja00124a002.
He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of Chemical Physics. 153 (11): 114502. Bibcode:2020JChPh.153k4502H. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. Bibcode:2014JCTC...10..865D. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.
Khoury GA, Bhatia N, Floudas CA (2014). "Hydration free energies calculated using the AMBER ff03 charge model for natural and unnatural amino acids and multiple water models". Computers & Chemical Engineering. 71: 745–752. doi:10.1016/j.compchemeng.2014.07.017.

nih.gov (Global: 5^th place; English: 5^th place)

ncbi.nlm.nih.gov

He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of Chemical Physics. 153 (11): 114502. Bibcode:2020JChPh.153k4502H. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. Bibcode:2014JCTC...10..865D. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.

pubmed.ncbi.nlm.nih.gov

He, X; Man, VH; Yang, W; Lee, TS; Wang, J (21 September 2020). "A fast and high-quality charge model for the next generation general AMBER force field". The Journal of Chemical Physics. 153 (11): 114502. Bibcode:2020JChPh.153k4502H. doi:10.1063/5.0019056. PMC 7728379. PMID 32962378.
Dickson, Callum J; Madej, Benjamin D; Skjevik, Åge A; Betz, Robin M; Teigen, Knut; Gould, Ian R; Walker, Ross C (2014). "Lipid14: The Amber Lipid Force Field". Journal of Chemical Theory and Computation. 10 (2): 865–879. Bibcode:2014JCTC...10..865D. doi:10.1021/ct4010307. PMC 3985482. PMID 24803855.
Khoury GA, Thompson JP, Smadbeck J, Kieslich CA, Floudas CA (December 2013). "Ab Initio Charge and AMBER Forcefield Parameters for Frequently Occurring Post-Translational Modifications". Journal of Chemical Theory and Computation. 9 (12): 5653–5674. doi:10.1021/ct400556v. PMC 3904396. PMID 24489522.
Khoury GA, Smadbeck J, Tamamis P, Vandris AC, Kieslich CA, Floudas CA (December 2014). "Forcefield_NCAA: ab initio charge parameters to aid in the discovery and design of therapeutic proteins and peptides with unnatural amino acids and their application to complement inhibitors of the compstatin family". ACS Synthetic Biology. 3 (12): 855–69. doi:10.1021/sb400168u. PMC 4277759. PMID 24932669.

upol.cz (Global: low place; English: low place)

fch.upol.cz

"OL Force Field Refinement for RNA and DNA Simulations". fch.upol.cz.

wiley.com (Global: 150^th place; English: 174^th place)

onlinelibrary.wiley.com

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. Bibcode:1981JCoCh...2..287W. doi:10.1002/jcc.540020311. ISSN 0192-8651.

worldcat.org (Global: 4^th place; English: 4^th place)

search.worldcat.org

Weiner, Paul K.; Kollman, Peter A. (1981). "AMBER: Assisted model building with energy refinement. A general program for modeling molecules and their interactions". Journal of Computational Chemistry. 2 (3): 287–303. Bibcode:1981JCoCh...2..287W. doi:10.1002/jcc.540020311. ISSN 0192-8651.
Pearlman, David A.; Case, David A.; Caldwell, James W.; Ross, Wilson S.; Cheatham, Thomas E.; DeBolt, Steve; Ferguson, David; Seibel, George; Kollman, Peter (1995). "AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules". Computer Physics Communications. 91 (1–3): 1–41. Bibcode:1995CoPhC..91....1P. doi:10.1016/0010-4655(95)00041-d. ISSN 0010-4655.