Agent-based model in biology (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Agent-based model in biology" in English language version.

refsWebsite

Global rank English rank

19nih.gov

4^th place

14doi.org

2^nd place

3web.archive.org

1^st place

3harvard.edu

18^th place

17^th place

3semanticscholar.org

11^th place

8^th place

2iemss.org

low place

1liv.ac.uk

low place

1worldcat.org

5^th place

1northwestern.edu

2,302^nd place

1,389^th place

doi.org (Global: 2^nd place; English: 2^nd place)

An G, Mi Q, Dutta-Moscato J, Vodovotz Y (2009). "Agent-based models in translational systems biology". Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 1 (2): 159–171. doi:10.1002/wsbm.45. PMC 3640333. PMID 20835989.
García MR, Vázquez JA, Teixeira IG, Alonso AA (2018). "Stochastic Individual-Based Modeling of Bacterial Growth and Division Using Flow Cytometry". Frontiers in Microbiology. 8: 2626. doi:10.3389/fmicb.2017.02626. PMC 5760514. PMID 29354110.
Ameden HA, Boxall PC, Cash SB, Vickers DA (2009). "An Agent-Based Model of Border Enforcement for Invasive Species Management". Canadian Journal of Agricultural Economics. 57 (4): 481–496. doi:10.1111/j.1744-7976.2009.01166.x.
Liang, Tong; Brinkman, Braden A. W. (14 March 2022). "Evolution of innate behavioral strategies through competitive population dynamics". PLOS Computational Biology. 18 (3) e1009934. doi:10.1371/journal.pcbi.1009934. ISSN 1553-7358. PMC 8947601. PMID 35286315.
Osborne JM, Fletcher AG, Pitt-Francis JM, Maini PK, Gavaghan DJ (February 2017). "Comparing individual-based approaches to modelling the self-organization of multicellular tissues". PLOS Computational Biology. 13 (2) e1005387. Bibcode:2017PLSCB..13E5387O. doi:10.1371/journal.pcbi.1005387. PMC 5330541. PMID 28192427.
Metzcar J, Wang Y, Heiland R, Macklin P (February 2019). "A Review of Cell-Based Computational Modeling in Cancer Biology". JCO Clinical Cancer Informatics. 3 (3): 1–13. doi:10.1200/CCI.18.00069. PMC 6584763. PMID 30715927.
Rejniak KA (July 2007). "An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development". Journal of Theoretical Biology. 247 (1): 186–204. Bibcode:2007JThBi.247..186R. doi:10.1016/j.jtbi.2007.02.019. PMID 17416390.
Newman TJ (2007). "Modeling Multicellular Structures Using the Subcellular Element Model". Single-Cell-Based Models in Biology and Medicine. Mathematics and Biosciences in Interaction. Basel: Birkhäuser Basel. pp. 221–239. doi:10.1007/978-3-7643-8123-3_10. ISBN 978-3-7643-8101-1.
Lardon LA, Merkey BV, Martins S, Dötsch A, Picioreanu C, Kreft JU, Smets BF (September 2011). "iDynoMiCS: next-generation individual-based modelling of biofilms". Environmental Microbiology. 13 (9): 2416–2434. doi:10.1111/j.1462-2920.2011.02414.x. PMID 21410622. S2CID 19524967.
Merkey BV, Lardon LA, Seoane JM, Kreft JU, Smets BF (September 2011). "Growth dependence of conjugation explains limited plasmid invasion in biofilms: an individual-based modelling study". Environmental Microbiology. 13 (9): 2435–2452. doi:10.1111/j.1462-2920.2011.02535.x. PMID 21906217.
Nguyen DH, Oketch-Rabah HA, Illa-Bochaca I, Geyer FC, Reis-Filho JS, Mao JH, et al. (May 2011). "Radiation acts on the microenvironment to affect breast carcinogenesis by distinct mechanisms that decrease cancer latency and affect tumor type". Cancer Cell. 19 (5): 640–651. doi:10.1016/j.ccr.2011.03.011. PMC 3110779. PMID 21575864.
Preston DL, Mattsson A, Holmberg E, Shore R, Hildreth NG, Boice JD (August 2002). "Radiation effects on breast cancer risk: a pooled analysis of eight cohorts". Radiation Research. 158 (2): 220–235. Bibcode:2002RadR..158..220P. doi:10.1667/0033-7587(2002)158[0220:reobcr]2.0.co;2. PMID 12105993. S2CID 30505427.
Mertens AC, Liu Q, Neglia JP, Wasilewski K, Leisenring W, Armstrong GT, et al. (October 2008). "Cause-specific late mortality among 5-year survivors of childhood cancer: the Childhood Cancer Survivor Study". Journal of the National Cancer Institute. 100 (19): 1368–1379. doi:10.1093/jnci/djn310. PMC 2556702. PMID 18812549.
Tang J, Fernandez-Garcia I, Vijayakumar S, Martinez-Ruis H, Illa-Bochaca I, Nguyen DH, et al. (March 2014). "Irradiation of juvenile, but not adult, mammary gland increases stem cell self-renewal and estrogen receptor negative tumors". Stem Cells. 32 (3): 649–661. doi:10.1002/stem.1533. PMID 24038768. S2CID 32979016.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Osborne JM, Fletcher AG, Pitt-Francis JM, Maini PK, Gavaghan DJ (February 2017). "Comparing individual-based approaches to modelling the self-organization of multicellular tissues". PLOS Computational Biology. 13 (2) e1005387. Bibcode:2017PLSCB..13E5387O. doi:10.1371/journal.pcbi.1005387. PMC 5330541. PMID 28192427.
Rejniak KA (July 2007). "An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development". Journal of Theoretical Biology. 247 (1): 186–204. Bibcode:2007JThBi.247..186R. doi:10.1016/j.jtbi.2007.02.019. PMID 17416390.
Preston DL, Mattsson A, Holmberg E, Shore R, Hildreth NG, Boice JD (August 2002). "Radiation effects on breast cancer risk: a pooled analysis of eight cohorts". Radiation Research. 158 (2): 220–235. Bibcode:2002RadR..158..220P. doi:10.1667/0033-7587(2002)158[0220:reobcr]2.0.co;2. PMID 12105993. S2CID 30505427.

iemss.org (Global: low place; English: low place)

Perez L, Dragucevic S (2010). Exploring Forest Management Practices Using and Agent-Based Model of Forest Insect Infestations (PDF). 2010 International Congress on Environmental Modeling and Software. Ottawa, Canada: International Environmental Modeling and Software Society (iEMSs). Archived from the original (PDF) on 8 October 2015. Retrieved 25 July 2016.
Evans A, Morgan D, Parry H (2004). Aphid Population Dynamics in Agricultural Landscapes: An Agent-based Simulation Model (PDF). 2010 International Congress on Environmental Modeling and Software. Osnabruck, Germany: International Environmental Modeling and Software Society (iEMSs). Archived from the original (PDF) on 6 October 2008. Retrieved 25 July 2016.

liv.ac.uk (Global: low place; English: low place)

csc.liv.ac.uk

Politopoulos I (11 September 2007). "Review and Analysis of Agent-based Models in Biology" (PDF). Archived from the original (PDF) on 27 July 2011.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

An G, Mi Q, Dutta-Moscato J, Vodovotz Y (2009). "Agent-based models in translational systems biology". Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 1 (2): 159–171. doi:10.1002/wsbm.45. PMC 3640333. PMID 20835989.
García MR, Vázquez JA, Teixeira IG, Alonso AA (2018). "Stochastic Individual-Based Modeling of Bacterial Growth and Division Using Flow Cytometry". Frontiers in Microbiology. 8: 2626. doi:10.3389/fmicb.2017.02626. PMC 5760514. PMID 29354110.
Liang, Tong; Brinkman, Braden A. W. (14 March 2022). "Evolution of innate behavioral strategies through competitive population dynamics". PLOS Computational Biology. 18 (3) e1009934. doi:10.1371/journal.pcbi.1009934. ISSN 1553-7358. PMC 8947601. PMID 35286315.
Osborne JM, Fletcher AG, Pitt-Francis JM, Maini PK, Gavaghan DJ (February 2017). "Comparing individual-based approaches to modelling the self-organization of multicellular tissues". PLOS Computational Biology. 13 (2) e1005387. Bibcode:2017PLSCB..13E5387O. doi:10.1371/journal.pcbi.1005387. PMC 5330541. PMID 28192427.
Metzcar J, Wang Y, Heiland R, Macklin P (February 2019). "A Review of Cell-Based Computational Modeling in Cancer Biology". JCO Clinical Cancer Informatics. 3 (3): 1–13. doi:10.1200/CCI.18.00069. PMC 6584763. PMID 30715927.
Rejniak KA (July 2007). "An immersed boundary framework for modelling the growth of individual cells: an application to the early tumour development". Journal of Theoretical Biology. 247 (1): 186–204. Bibcode:2007JThBi.247..186R. doi:10.1016/j.jtbi.2007.02.019. PMID 17416390.
Lardon LA, Merkey BV, Martins S, Dötsch A, Picioreanu C, Kreft JU, Smets BF (September 2011). "iDynoMiCS: next-generation individual-based modelling of biofilms". Environmental Microbiology. 13 (9): 2416–2434. doi:10.1111/j.1462-2920.2011.02414.x. PMID 21410622. S2CID 19524967.
Merkey BV, Lardon LA, Seoane JM, Kreft JU, Smets BF (September 2011). "Growth dependence of conjugation explains limited plasmid invasion in biofilms: an individual-based modelling study". Environmental Microbiology. 13 (9): 2435–2452. doi:10.1111/j.1462-2920.2011.02535.x. PMID 21906217.
Nguyen DH, Oketch-Rabah HA, Illa-Bochaca I, Geyer FC, Reis-Filho JS, Mao JH, et al. (May 2011). "Radiation acts on the microenvironment to affect breast carcinogenesis by distinct mechanisms that decrease cancer latency and affect tumor type". Cancer Cell. 19 (5): 640–651. doi:10.1016/j.ccr.2011.03.011. PMC 3110779. PMID 21575864.
Preston DL, Mattsson A, Holmberg E, Shore R, Hildreth NG, Boice JD (August 2002). "Radiation effects on breast cancer risk: a pooled analysis of eight cohorts". Radiation Research. 158 (2): 220–235. Bibcode:2002RadR..158..220P. doi:10.1667/0033-7587(2002)158[0220:reobcr]2.0.co;2. PMID 12105993. S2CID 30505427.
Mertens AC, Liu Q, Neglia JP, Wasilewski K, Leisenring W, Armstrong GT, et al. (October 2008). "Cause-specific late mortality among 5-year survivors of childhood cancer: the Childhood Cancer Survivor Study". Journal of the National Cancer Institute. 100 (19): 1368–1379. doi:10.1093/jnci/djn310. PMC 2556702. PMID 18812549.
Tang J, Fernandez-Garcia I, Vijayakumar S, Martinez-Ruis H, Illa-Bochaca I, Nguyen DH, et al. (March 2014). "Irradiation of juvenile, but not adult, mammary gland increases stem cell self-renewal and estrogen receptor negative tumors". Stem Cells. 32 (3): 649–661. doi:10.1002/stem.1533. PMID 24038768. S2CID 32979016.

ncbi.nlm.nih.gov

An G, Mi Q, Dutta-Moscato J, Vodovotz Y (2009). "Agent-based models in translational systems biology". Wiley Interdisciplinary Reviews. Systems Biology and Medicine. 1 (2): 159–171. doi:10.1002/wsbm.45. PMC 3640333. PMID 20835989.
García MR, Vázquez JA, Teixeira IG, Alonso AA (2018). "Stochastic Individual-Based Modeling of Bacterial Growth and Division Using Flow Cytometry". Frontiers in Microbiology. 8: 2626. doi:10.3389/fmicb.2017.02626. PMC 5760514. PMID 29354110.
Liang, Tong; Brinkman, Braden A. W. (14 March 2022). "Evolution of innate behavioral strategies through competitive population dynamics". PLOS Computational Biology. 18 (3) e1009934. doi:10.1371/journal.pcbi.1009934. ISSN 1553-7358. PMC 8947601. PMID 35286315.
Osborne JM, Fletcher AG, Pitt-Francis JM, Maini PK, Gavaghan DJ (February 2017). "Comparing individual-based approaches to modelling the self-organization of multicellular tissues". PLOS Computational Biology. 13 (2) e1005387. Bibcode:2017PLSCB..13E5387O. doi:10.1371/journal.pcbi.1005387. PMC 5330541. PMID 28192427.
Metzcar J, Wang Y, Heiland R, Macklin P (February 2019). "A Review of Cell-Based Computational Modeling in Cancer Biology". JCO Clinical Cancer Informatics. 3 (3): 1–13. doi:10.1200/CCI.18.00069. PMC 6584763. PMID 30715927.
Nguyen DH, Oketch-Rabah HA, Illa-Bochaca I, Geyer FC, Reis-Filho JS, Mao JH, et al. (May 2011). "Radiation acts on the microenvironment to affect breast carcinogenesis by distinct mechanisms that decrease cancer latency and affect tumor type". Cancer Cell. 19 (5): 640–651. doi:10.1016/j.ccr.2011.03.011. PMC 3110779. PMID 21575864.
Mertens AC, Liu Q, Neglia JP, Wasilewski K, Leisenring W, Armstrong GT, et al. (October 2008). "Cause-specific late mortality among 5-year survivors of childhood cancer: the Childhood Cancer Survivor Study". Journal of the National Cancer Institute. 100 (19): 1368–1379. doi:10.1093/jnci/djn310. PMC 2556702. PMID 18812549.

northwestern.edu (Global: 2,302^nd place; English: 1,389^th place)

ccl.northwestern.edu

BehaviorSpace Guide

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Lardon LA, Merkey BV, Martins S, Dötsch A, Picioreanu C, Kreft JU, Smets BF (September 2011). "iDynoMiCS: next-generation individual-based modelling of biofilms". Environmental Microbiology. 13 (9): 2416–2434. doi:10.1111/j.1462-2920.2011.02414.x. PMID 21410622. S2CID 19524967.
Preston DL, Mattsson A, Holmberg E, Shore R, Hildreth NG, Boice JD (August 2002). "Radiation effects on breast cancer risk: a pooled analysis of eight cohorts". Radiation Research. 158 (2): 220–235. Bibcode:2002RadR..158..220P. doi:10.1667/0033-7587(2002)158[0220:reobcr]2.0.co;2. PMID 12105993. S2CID 30505427.
Tang J, Fernandez-Garcia I, Vijayakumar S, Martinez-Ruis H, Illa-Bochaca I, Nguyen DH, et al. (March 2014). "Irradiation of juvenile, but not adult, mammary gland increases stem cell self-renewal and estrogen receptor negative tumors". Stem Cells. 32 (3): 649–661. doi:10.1002/stem.1533. PMID 24038768. S2CID 32979016.

web.archive.org (Global: 1^st place; English: 1^st place)

Politopoulos I (11 September 2007). "Review and Analysis of Agent-based Models in Biology" (PDF). Archived from the original (PDF) on 27 July 2011.
Perez L, Dragucevic S (2010). Exploring Forest Management Practices Using and Agent-Based Model of Forest Insect Infestations (PDF). 2010 International Congress on Environmental Modeling and Software. Ottawa, Canada: International Environmental Modeling and Software Society (iEMSs). Archived from the original (PDF) on 8 October 2015. Retrieved 25 July 2016.
Evans A, Morgan D, Parry H (2004). Aphid Population Dynamics in Agricultural Landscapes: An Agent-based Simulation Model (PDF). 2010 International Congress on Environmental Modeling and Software. Osnabruck, Germany: International Environmental Modeling and Software Society (iEMSs). Archived from the original (PDF) on 6 October 2008. Retrieved 25 July 2016.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

Liang, Tong; Brinkman, Braden A. W. (14 March 2022). "Evolution of innate behavioral strategies through competitive population dynamics". PLOS Computational Biology. 18 (3) e1009934. doi:10.1371/journal.pcbi.1009934. ISSN 1553-7358. PMC 8947601. PMID 35286315.