BLAST (biotechnology) (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "BLAST (biotechnology)" in English language version.

refsWebsite

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19nih.gov

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13doi.org

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5semanticscholar.org

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4berkeley.edu

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2web.archive.org

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2worldcat.org

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2wisc.edu

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1nytimes.com

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1b-eye-network.com

low place

1stanford.edu

179^th place

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1blastalgorithm.com

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1zenodo.org

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1sciencewatch.com

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1nature.com

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1harvard.edu

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1bioinformaticsonline.org

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1youtube.com

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1libretexts.org

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1hicomb.org

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1archives-ouvertes.fr

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1psu.edu

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1handle.net

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1ulg.ac.be

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1ncbi.github.io

low place

archives-ouvertes.fr

hal.archives-ouvertes.fr

Lavenier, D. (2009). "Ordered index seed algorithm for intensive DNA sequence comparison" (PDF). 2008 IEEE International Symposium on Parallel and Distributed Processing (PDF). pp. 1–8. CiteSeerX 10.1.1.155.3633. doi:10.1109/IPDPS.2008.4536172. ISBN 978-1-4244-1693-6. S2CID 10804289.

b-eye-network.com

R. M. Casey (2005). "BLAST Sequences Aid in Genomics and Proteomics". Business Intelligence Network.

berkeley.edu

guides.lib.berkeley.edu

bioinformaticsonline.org

Mount, D. W. (2004). Bioinformatics: Sequence and Genome Analysis (2nd ed.). Cold Spring Harbor Press. ISBN 978-0-87969-712-9.

blastalgorithm.com

Stephen Altschul; Warren Gish; Webb Miller; Eugene Myers; David J. Lipman (1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–410. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712. S2CID 14441902.

doi.org

Stephen Altschul; Warren Gish; Webb Miller; Eugene Myers; David J. Lipman (1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–410. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712. S2CID 14441902.
Oehmen, C.; Nieplocha, J. (2006). "ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis". IEEE Transactions on Parallel and Distributed Systems. 17 (8): 740. doi:10.1109/TPDS.2006.112. S2CID 11122366.
Oehmen, C. S.; Baxter, D. J. (2013). "ScalaBLAST 2.0: Rapid and robust BLAST calculations on multiprocessor systems". Bioinformatics. 29 (6): 797–798. doi:10.1093/bioinformatics/btt013. PMC 3597145. PMID 23361326.
Penumarthi, Lasya R.; Baptista, Rodrigo P.; Beaudry, Megan S.; Glenn, Travis C.; Kissinger, Jessica C. (2024-12-18). "A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis". Scientific Data. 11 (1): 1388. doi:10.1038/s41597-024-04235-7. ISSN 2052-4463. PMC 11655656.
Steven Henikoff; Jorja Henikoff (1992). "Amino Acid Substitution Matrices from Protein Blocks". PNAS. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.
Yim, WC; Cushman, JC (2017). "Divide and Conquer (DC) BLAST: fast and easy BLAST execution within HPC environments". PeerJ. 5: e3486. doi:10.7717/peerj.3486. PMC 5483034. PMID 28652936.
Kent, W. James (2002-04-01). "BLAT—The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.
Lavenier, D.; Lavenier, Dominique (2009). "PLAST: parallel local alignment search tool for database comparison". BMC Bioinformatics. 10: 329. doi:10.1186/1471-2105-10-329. PMC 2770072. PMID 19821978.
Lavenier, D. (2009). "Ordered index seed algorithm for intensive DNA sequence comparison" (PDF). 2008 IEEE International Symposium on Parallel and Distributed Processing (PDF). pp. 1–8. CiteSeerX 10.1.1.155.3633. doi:10.1109/IPDPS.2008.4536172. ISBN 978-1-4244-1693-6. S2CID 10804289.
Buchfink, Xie and Huson (2015). "Fast and sensitive protein alignment using DIAMOND". Nature Methods. 12 (1): 59–60. doi:10.1038/nmeth.3176. PMID 25402007. S2CID 5346781.
Steinegger, Martin; Soeding, Johannes (2017-10-16). "MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets". Nature Biotechnology. 35 (11): 1026–1028. doi:10.1038/nbt.3988. hdl:11858/00-001M-0000-002E-1967-3. PMID 29035372. S2CID 402352.
Maleki, Ehsan; Koohi, Somayyeh; Kavehvash, Zahra; Mashaghi, Alireza (2020). "OptCAM: An ultra-fast all-optical architecture for DNA variant discovery". Journal of Biophotonics. 13 (1): e201900227. doi:10.1002/jbio.201900227. PMID 31397961.
Neumann, Kumar and Shalchian-Tabrizi (2014). "BLAST output visualization in the new sequencing era". Briefings in Bioinformatics. 15 (4): 484–503. doi:10.1093/bib/bbt009. PMID 23603091.

handle.net

hdl.handle.net

Steinegger, Martin; Soeding, Johannes (2017-10-16). "MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets". Nature Biotechnology. 35 (11): 1026–1028. doi:10.1038/nbt.3988. hdl:11858/00-001M-0000-002E-1967-3. PMID 29035372. S2CID 402352.

harvard.edu

ui.adsabs.harvard.edu

Steven Henikoff; Jorja Henikoff (1992). "Amino Acid Substitution Matrices from Protein Blocks". PNAS. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.

hicomb.org

Lavenier, D. (2009). "Ordered index seed algorithm for intensive DNA sequence comparison" (PDF). 2008 IEEE International Symposium on Parallel and Distributed Processing (PDF). pp. 1–8. CiteSeerX 10.1.1.155.3633. doi:10.1109/IPDPS.2008.4536172. ISBN 978-1-4244-1693-6. S2CID 10804289.

libretexts.org

bio.libretexts.org

Kellis, Manolis (5 October 2020). "The Blast Algorithm (Basic Alignment Search Tool". LibreTexts. Retrieved 2023-04-17.

nature.com

Penumarthi, Lasya R.; Baptista, Rodrigo P.; Beaudry, Megan S.; Glenn, Travis C.; Kissinger, Jessica C. (2024-12-18). "A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis". Scientific Data. 11 (1): 1388. doi:10.1038/s41597-024-04235-7. ISSN 2052-4463. PMC 11655656.

ncbi.github.io

"NCBI Magic-BLAST". ncbi.github.io. Retrieved 16 May 2019.

nih.gov

nytimes.com

Douglas Martin (21 February 2008). "Samuel Karlin, Versatile Mathematician, Dies at 83". The New York Times.

psu.edu

citeseerx.ist.psu.edu

Lavenier, D. (2009). "Ordered index seed algorithm for intensive DNA sequence comparison" (PDF). 2008 IEEE International Symposium on Parallel and Distributed Processing (PDF). pp. 1–8. CiteSeerX 10.1.1.155.3633. doi:10.1109/IPDPS.2008.4536172. ISBN 978-1-4244-1693-6. S2CID 10804289.

sciencewatch.com

"Sense from Sequences: Stephen F. Altschul on Bettering BLAST". ScienceWatch. July–August 2000. Archived from the original on 7 October 2007.

semanticscholar.org

api.semanticscholar.org

Stephen Altschul; Warren Gish; Webb Miller; Eugene Myers; David J. Lipman (1990). "Basic local alignment search tool". Journal of Molecular Biology. 215 (3): 403–410. doi:10.1016/S0022-2836(05)80360-2. PMID 2231712. S2CID 14441902.
Oehmen, C.; Nieplocha, J. (2006). "ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis". IEEE Transactions on Parallel and Distributed Systems. 17 (8): 740. doi:10.1109/TPDS.2006.112. S2CID 11122366.
Lavenier, D. (2009). "Ordered index seed algorithm for intensive DNA sequence comparison" (PDF). 2008 IEEE International Symposium on Parallel and Distributed Processing (PDF). pp. 1–8. CiteSeerX 10.1.1.155.3633. doi:10.1109/IPDPS.2008.4536172. ISBN 978-1-4244-1693-6. S2CID 10804289.
Buchfink, Xie and Huson (2015). "Fast and sensitive protein alignment using DIAMOND". Nature Methods. 12 (1): 59–60. doi:10.1038/nmeth.3176. PMID 25402007. S2CID 5346781.
Steinegger, Martin; Soeding, Johannes (2017-10-16). "MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets". Nature Biotechnology. 35 (11): 1026–1028. doi:10.1038/nbt.3988. hdl:11858/00-001M-0000-002E-1967-3. PMID 29035372. S2CID 402352.

stanford.edu

news.stanford.edu

Dan Stober (January 16, 2008). "Sam Karlin, mathematician who improved DNA analysis, dead at 83". Stanford.edu. Archived from the original on June 12, 2016. Retrieved July 16, 2019.

ulg.ac.be

montefiore.ulg.ac.be

"Bioinformatics Explained: BLAST versus Smith-Waterman" (PDF). 4 July 2007.

web.archive.org

Dan Stober (January 16, 2008). "Sam Karlin, mathematician who improved DNA analysis, dead at 83". Stanford.edu. Archived from the original on June 12, 2016. Retrieved July 16, 2019.
"Sense from Sequences: Stephen F. Altschul on Bettering BLAST". ScienceWatch. July–August 2000. Archived from the original on 7 October 2007.

wisc.edu

pages.cs.wisc.edu

Darling, Ace; Carey, Lewis; Feng, Wei-Chun (2003). "The design, implementation, and evaluation of mpiBLAST" (PDF). University of Wisconsin-Madison. Retrieved 2023-04-17.
Darling, Ace; Carey, Lewis; Feng, Wei-Chun (2003). "The design, implementation, and evaluation of mpiBLAST" (PDF). University of Wisconsin-Madison. Retrieved 2023-04-17.

worldcat.org

search.worldcat.org

Penumarthi, Lasya R.; Baptista, Rodrigo P.; Beaudry, Megan S.; Glenn, Travis C.; Kissinger, Jessica C. (2024-12-18). "A new chromosome-level genome assembly and annotation of Cryptosporidium meleagridis". Scientific Data. 11 (1): 1388. doi:10.1038/s41597-024-04235-7. ISSN 2052-4463. PMC 11655656.
Kent, W. James (2002-04-01). "BLAT—The BLAST-Like Alignment Tool". Genome Research. 12 (4): 656–664. doi:10.1101/gr.229202. ISSN 1088-9051. PMC 187518. PMID 11932250.

youtube.com

Adapted from Biological Sequence Analysis I, Current Topics in Genome Analysis [1].

zenodo.org

Oehmen, C.; Nieplocha, J. (2006). "ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics Analysis". IEEE Transactions on Parallel and Distributed Systems. 17 (8): 740. doi:10.1109/TPDS.2006.112. S2CID 11122366.

BLAST (biotechnology) (English Wikipedia)

archives-ouvertes.fr

hal.archives-ouvertes.fr

b-eye-network.com

berkeley.edu

guides.lib.berkeley.edu

bioinformaticsonline.org

blastalgorithm.com

doi.org

handle.net

hdl.handle.net

harvard.edu

ui.adsabs.harvard.edu

hicomb.org

libretexts.org

bio.libretexts.org

nature.com

ncbi.github.io

nih.gov

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

blast.ncbi.nlm.nih.gov

nytimes.com

psu.edu

citeseerx.ist.psu.edu

sciencewatch.com

semanticscholar.org

api.semanticscholar.org

stanford.edu

news.stanford.edu

ulg.ac.be

montefiore.ulg.ac.be

web.archive.org

wisc.edu

pages.cs.wisc.edu

worldcat.org

search.worldcat.org

youtube.com

zenodo.org