BLOSUM (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "BLOSUM" in English language version.

refsWebsite

Global rank English rank

16nih.gov

4^th place

9doi.org

2^nd place

3web.archive.org

1^st place

2semanticscholar.org

11^th place

8^th place

1harvard.edu

18^th place

17^th place

1archive.org

6^th place

1nature.com

234^th place

397^th place

1utm.my

low place

1uic.edu

5,752^nd place

3,776^th place

1psu.edu

207^th place

136^th place

1worldcat.org

5^th place

1books.google.com

3^rd place

1birec.org

low place

1ctu.edu.vn

low place

1github.com

383^rd place

320^th place

archive.org (Global: 6^th place; English: 6^th place)

Pal, Jayanta K; Ghaskadbi, Saroj S (2009). "DNA Damage, Repair and Recombination". Fundamentals of Molecular Biology (1st ed.). Oxford University Press. pp. 187–203. ISBN 9780195697810.

birec.org (Global: low place; English: low place)

Saud, Omama (2009). "PAM and BLOSUM Substitution Matrices". Birec. Archived from the original on 9 March 2013. Retrieved 20 October 2013.

books.google.com (Global: 3^rd place; English: 3^rd place)

Zomaya, Albert Y. (2006). Handbook of Nature-Inspired And Innovative Computing. New York, NY: Springer. ISBN 978-0-387-40532-2.page 673

ctu.edu.vn (Global: low place; English: low place)

"The art of aligning protein sequences Part 1 Matrices". Dai hoc Can Tho - Can Tho University. Archived from the original on 11 September 2014. Retrieved 7 September 2014.

doi.org (Global: 2^nd place; English: 2^nd place)

Henikoff, Steven; Henikoff, Jorja G. (15 November 1992). "Amino acid substitution matrices from protein blocks". Proceedings of the National Academy of Sciences. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.
Pertsemlidis, Alexander; Fondon, John W (October 2001). "Having a BLAST with bioinformatics (and avoiding BLASTphemy)". Genome Biology. 2 (10): reviews2002.1–reviews2002.10. doi:10.1186/gb-2001-2-10-reviews2002. PMC 138974. PMID 11597340.
States, D; Gish, W; Altschul, S (August 1991). "Improved sensitivity of nucleic acid database searches using application-specific scoring matrices". Methods. 3 (1): 66–70. CiteSeerX 10.1.1.114.8183. doi:10.1016/s1046-2023(05)80165-3. ISSN 1046-2023.
Veerassamy, Shalini; Smith, Andrew; Tillier, Elisabeth R. M. (December 2003). "A Transition Probability Model for Amino Acid Substitutions from Blocks". Journal of Computational Biology. 10 (6): 997–1010. doi:10.1089/106652703322756195. PMID 14980022.
Styczynski, Mark P; Jensen, Kyle L; Rigoutsos, Isidore; Stephanopoulos, Gregory (March 2008). "BLOSUM62 miscalculations improve search performance". Nature Biotechnology. 26 (3): 274–275. doi:10.1038/nbt0308-274. PMID 18327232. S2CID 205266180.
Govindarajan, R; Leela, BC; Nair, AS (21 May 2018). "RBLOSUM performs better than CorBLOSUM with lesser error per query". BMC Research Notes. 11 (1): 328. doi:10.1186/s13104-018-3415-5. PMC 5963171. PMID 29784028.
Hess, M; Keul, F; Goesele, M; Hamacher, K (27 April 2016). "Addressing inaccuracies in BLOSUM computation improves homology search performance". BMC Bioinformatics. 17: 189. doi:10.1186/s12859-016-1060-3. PMC 4849092. PMID 27122148.
Roque-Afonso, Anne Marie; Férey, Marie-Pierre; Ly, Thoai Duong; Graube, Arielle; Costa-Faria, Luciana; Samuel, Didier; Dussaix, Elisabeth (November 2007). "Viral and Clinical Factors associated with Surface Gene Variants among Hepatitis B Virus Carriers". Antiviral Therapy. 12 (8): 1255–1264. doi:10.1177/135965350701200801. PMID 18240865. S2CID 9822759.
Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Lauemøller, Sanne Lise; Lamberth, Kasper; Buus, Søren; Brunak, Søren; Lund, Ole (May 2003). "Reliable prediction of T-cell epitopes using neural networks with novel sequence representations". Protein Science. 12 (5): 1007–1017. doi:10.1110/ps.0239403. PMC 2323871. PMID 12717023.

github.com (Global: 383^rd place; English: 320^th place)

"ncbi-cxx-toolkit-public/src/util/tables at main · ncbi/ncbi-cxx-toolkit-public". GitHub.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Henikoff, Steven; Henikoff, Jorja G. (15 November 1992). "Amino acid substitution matrices from protein blocks". Proceedings of the National Academy of Sciences. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.

nature.com (Global: 234^th place; English: 397^th place)

Lobo, Ingrid (2008). "Mendelian Ratios and Lethal Genes". Nature. Retrieved 19 October 2013.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Henikoff, Steven; Henikoff, Jorja G. (15 November 1992). "Amino acid substitution matrices from protein blocks". Proceedings of the National Academy of Sciences. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.
Pertsemlidis, Alexander; Fondon, John W (October 2001). "Having a BLAST with bioinformatics (and avoiding BLASTphemy)". Genome Biology. 2 (10): reviews2002.1–reviews2002.10. doi:10.1186/gb-2001-2-10-reviews2002. PMC 138974. PMID 11597340.
Veerassamy, Shalini; Smith, Andrew; Tillier, Elisabeth R. M. (December 2003). "A Transition Probability Model for Amino Acid Substitutions from Blocks". Journal of Computational Biology. 10 (6): 997–1010. doi:10.1089/106652703322756195. PMID 14980022.
Styczynski, Mark P; Jensen, Kyle L; Rigoutsos, Isidore; Stephanopoulos, Gregory (March 2008). "BLOSUM62 miscalculations improve search performance". Nature Biotechnology. 26 (3): 274–275. doi:10.1038/nbt0308-274. PMID 18327232. S2CID 205266180.
Govindarajan, R; Leela, BC; Nair, AS (21 May 2018). "RBLOSUM performs better than CorBLOSUM with lesser error per query". BMC Research Notes. 11 (1): 328. doi:10.1186/s13104-018-3415-5. PMC 5963171. PMID 29784028.
Hess, M; Keul, F; Goesele, M; Hamacher, K (27 April 2016). "Addressing inaccuracies in BLOSUM computation improves homology search performance". BMC Bioinformatics. 17: 189. doi:10.1186/s12859-016-1060-3. PMC 4849092. PMID 27122148.
Roque-Afonso, Anne Marie; Férey, Marie-Pierre; Ly, Thoai Duong; Graube, Arielle; Costa-Faria, Luciana; Samuel, Didier; Dussaix, Elisabeth (November 2007). "Viral and Clinical Factors associated with Surface Gene Variants among Hepatitis B Virus Carriers". Antiviral Therapy. 12 (8): 1255–1264. doi:10.1177/135965350701200801. PMID 18240865. S2CID 9822759.
Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Lauemøller, Sanne Lise; Lamberth, Kasper; Buus, Søren; Brunak, Søren; Lund, Ole (May 2003). "Reliable prediction of T-cell epitopes using neural networks with novel sequence representations". Protein Science. 12 (5): 1007–1017. doi:10.1110/ps.0239403. PMC 2323871. PMID 12717023.

ncbi.nlm.nih.gov

Henikoff, Steven; Henikoff, Jorja G. (15 November 1992). "Amino acid substitution matrices from protein blocks". Proceedings of the National Academy of Sciences. 89 (22): 10915–10919. Bibcode:1992PNAS...8910915H. doi:10.1073/pnas.89.22.10915. PMC 50453. PMID 1438297.
Pertsemlidis, Alexander; Fondon, John W (October 2001). "Having a BLAST with bioinformatics (and avoiding BLASTphemy)". Genome Biology. 2 (10): reviews2002.1–reviews2002.10. doi:10.1186/gb-2001-2-10-reviews2002. PMC 138974. PMID 11597340.
Govindarajan, R; Leela, BC; Nair, AS (21 May 2018). "RBLOSUM performs better than CorBLOSUM with lesser error per query". BMC Research Notes. 11 (1): 328. doi:10.1186/s13104-018-3415-5. PMC 5963171. PMID 29784028.
Hess, M; Keul, F; Goesele, M; Hamacher, K (27 April 2016). "Addressing inaccuracies in BLOSUM computation improves homology search performance". BMC Bioinformatics. 17: 189. doi:10.1186/s12859-016-1060-3. PMC 4849092. PMID 27122148.
Nielsen, Morten; Lundegaard, Claus; Worning, Peder; Lauemøller, Sanne Lise; Lamberth, Kasper; Buus, Søren; Brunak, Søren; Lund, Ole (May 2003). "Reliable prediction of T-cell epitopes using neural networks with novel sequence representations". Protein Science. 12 (5): 1007–1017. doi:10.1110/ps.0239403. PMC 2323871. PMID 12717023.
"The Statistics of Sequence Similarity Scores". National Centre for Biotechnology Information. Retrieved 20 October 2013.
"NCBI C Toolkit - /c/data/". www.ncbi.nlm.nih.gov.

ftp.ncbi.nih.gov

For the use of bit-units, see the discussion in https://ftp.ncbi.nih.gov/repository/blocks/unix/blosum/README

psu.edu (Global: 207^th place; English: 136^th place)

citeseerx.ist.psu.edu

States, D; Gish, W; Altschul, S (August 1991). "Improved sensitivity of nucleic acid database searches using application-specific scoring matrices". Methods. 3 (1): 66–70. CiteSeerX 10.1.1.114.8183. doi:10.1016/s1046-2023(05)80165-3. ISSN 1046-2023.

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Styczynski, Mark P; Jensen, Kyle L; Rigoutsos, Isidore; Stephanopoulos, Gregory (March 2008). "BLOSUM62 miscalculations improve search performance". Nature Biotechnology. 26 (3): 274–275. doi:10.1038/nbt0308-274. PMID 18327232. S2CID 205266180.
Roque-Afonso, Anne Marie; Férey, Marie-Pierre; Ly, Thoai Duong; Graube, Arielle; Costa-Faria, Luciana; Samuel, Didier; Dussaix, Elisabeth (November 2007). "Viral and Clinical Factors associated with Surface Gene Variants among Hepatitis B Virus Carriers". Antiviral Therapy. 12 (8): 1255–1264. doi:10.1177/135965350701200801. PMID 18240865. S2CID 9822759.

uic.edu (Global: 5,752^nd place; English: 3,776^th place)

cs.uic.edu

Sivaramakrishnan, Murali; Perisic, Ognjen; Ranjan, Shashi. "CS#594 - Group 13 (Tools and softwares)" (PDF). University of Illinois at Chicago - UIC. Retrieved 9 September 2014.

utm.my (Global: low place; English: low place)

web.utm.my

"BLOSSUM MATRICES: Introduction to BIOINFORMATICS" (PDF). UNIVERSITI TEKNOLOGI MALAYSIA. 2009. Retrieved 9 September 2014.^{[permanent dead link]}

web.archive.org (Global: 1^st place; English: 1^st place)

NIH "Scoring Systems"
Saud, Omama (2009). "PAM and BLOSUM Substitution Matrices". Birec. Archived from the original on 9 March 2013. Retrieved 20 October 2013.
"The art of aligning protein sequences Part 1 Matrices". Dai hoc Can Tho - Can Tho University. Archived from the original on 11 September 2014. Retrieved 7 September 2014.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

States, D; Gish, W; Altschul, S (August 1991). "Improved sensitivity of nucleic acid database searches using application-specific scoring matrices". Methods. 3 (1): 66–70. CiteSeerX 10.1.1.114.8183. doi:10.1016/s1046-2023(05)80165-3. ISSN 1046-2023.

BLOSUM (English Wikipedia)

archive.org (Global: 6th place; English: 6th place)

birec.org (Global: low place; English: low place)

books.google.com (Global: 3rd place; English: 3rd place)

ctu.edu.vn (Global: low place; English: low place)

doi.org (Global: 2nd place; English: 2nd place)

github.com (Global: 383rd place; English: 320th place)

harvard.edu (Global: 18th place; English: 17th place)

ui.adsabs.harvard.edu

nature.com (Global: 234th place; English: 397th place)

nih.gov (Global: 4th place; English: 4th place)

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

ftp.ncbi.nih.gov

psu.edu (Global: 207th place; English: 136th place)

citeseerx.ist.psu.edu

semanticscholar.org (Global: 11th place; English: 8th place)

api.semanticscholar.org

uic.edu (Global: 5,752nd place; English: 3,776th place)

cs.uic.edu

utm.my (Global: low place; English: low place)

web.utm.my

web.archive.org (Global: 1st place; English: 1st place)

worldcat.org (Global: 5th place; English: 5th place)

search.worldcat.org

archive.org (Global: 6^th place; English: 6^th place)

books.google.com (Global: 3^rd place; English: 3^rd place)

doi.org (Global: 2^nd place; English: 2^nd place)

github.com (Global: 383^rd place; English: 320^th place)

harvard.edu (Global: 18^th place; English: 17^th place)

nature.com (Global: 234^th place; English: 397^th place)

nih.gov (Global: 4^th place; English: 4^th place)

psu.edu (Global: 207^th place; English: 136^th place)

semanticscholar.org (Global: 11^th place; English: 8^th place)

uic.edu (Global: 5,752^nd place; English: 3,776^th place)

web.archive.org (Global: 1^st place; English: 1^st place)

worldcat.org (Global: 5^th place; English: 5^th place)