Biclustering (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Biclustering" in English language version.

refsWebsite

Global rank English rank

24doi.org

2^nd place

16nih.gov

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13semanticscholar.org

11^th place

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3acm.org

1,185^th place

840^th place

2handle.net

102^nd place

76^th place

1psu.edu

207^th place

136^th place

1jstor.org

26^th place

20^th place

1princeton.edu

741^st place

577^th place

1uvt.nl

low place

1harvard.edu

18^th place

17^th place

1arxiv.org

69^th place

59^th place

1nb.no

1,595^th place

4,129^th place

1miamioh.edu

low place

acm.org

dl.acm.org

Dhillon, Inderjit S. (2001). "Co-clustering documents and words using bipartite spectral graph partitioning". Proceedings of the seventh ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 269–274. doi:10.1145/502512.502550. ISBN 158113391X. S2CID 11847258.
Dhillon, Inderjit S.; Mallela, Subramanyam; Modha, Dharmendra S. (2003). "Information-theoretic co-clustering". Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 89–98. doi:10.1145/956750.956764. ISBN 1581137370. S2CID 12286784.
Banerjee, Arindam; Dhillon, Inderjit; Ghosh, Joydeep; Merugu, Srujana; Modha, Dharmendra S. (2004). "A generalized maximum entropy approach to bregman co-clustering and matrix approximation". Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 509–514. doi:10.1145/1014052.1014111. ISBN 1581138881. S2CID 2719002.

arxiv.org

Orzechowski P, Sipper M, Huang X, Moore JH (2018). "EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery". Bioinformatics. 34 (21): 3719–3726. arXiv:1801.03039. doi:10.1093/bioinformatics/bty401. PMC 6198864. PMID 29790909.

doi.org

G. Govaert; M. Nadif (2008). "Block clustering with bernoulli mixture models: Comparison of different approaches". Computational Statistics and Data Analysis. 52 (6): 3233–3245. doi:10.1016/j.csda.2007.09.007.
R. Balamurugan; A.M. Natarajan; K. Premalatha (2015). "Stellar-Mass Black Hole Optimization for Biclustering Microarray Gene Expression Data". Applied Artificial Intelligence. 29 (4): 353–381. doi:10.1080/08839514.2015.1016391. S2CID 44624424.
R. Balamurugan; A.M. Natarajan; K. Premalatha (2016). "A Modified Harmony Search Method for Biclustering Microarray Gene Expression Data". International Journal of Data Mining and Bioinformatics. 16 (4): 269–289. doi:10.1504/IJDMB.2016.082205.
Van Mechelen I, Bock HH, De Boeck P (2004). "Two-mode clustering methods:a structured overview". Statistical Methods in Medical Research. 13 (5): 363–94. CiteSeerX 10.1.1.706.4201. doi:10.1191/0962280204sm373ra. PMID 15516031. S2CID 19058237.
Hartigan JA (1972). "Direct clustering of a data matrix". Journal of the American Statistical Association. 67 (337): 123–9. doi:10.2307/2284710. JSTOR 2284710.
Dhillon, Inderjit S. (2001). "Co-clustering documents and words using bipartite spectral graph partitioning". Proceedings of the seventh ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 269–274. doi:10.1145/502512.502550. ISBN 158113391X. S2CID 11847258.
Dhillon, Inderjit S.; Mallela, Subramanyam; Modha, Dharmendra S. (2003). "Information-theoretic co-clustering". Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 89–98. doi:10.1145/956750.956764. ISBN 1581137370. S2CID 12286784.
Banerjee, Arindam; Dhillon, Inderjit; Ghosh, Joydeep; Merugu, Srujana; Modha, Dharmendra S. (2004). "A generalized maximum entropy approach to bregman co-clustering and matrix approximation". Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 509–514. doi:10.1145/1014052.1014111. ISBN 1581138881. S2CID 2719002.
Bekkerman, Ron; El-Yaniv, Ran; McCallum, Andrew (2005). "Multi-way distributional clustering via pairwise interactions". Proceedings of the 22nd international conference on Machine learning - ICML '05. pp. 41–48. doi:10.1145/1102351.1102357. ISBN 1595931805. S2CID 858524.
Peeters R (2003). "The maximum edge biclique problem is NP-complete". Discrete Applied Mathematics. 131 (3): 651–654. doi:10.1016/S0166-218X(03)00333-0. S2CID 3102766.
Madeira SC, Oliveira AL (2004). "Biclustering Algorithms for Biological Data Analysis: A Survey". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (1): 24–45. doi:10.1109/TCBB.2004.2. PMID 17048406. S2CID 206628783.
Kriegel, H.-P.; Kröger, P.; Zimek, A. (March 2009). "Clustering High Dimensional Data: A Survey on Subspace Clustering, Pattern-based Clustering, and Correlation Clustering". ACM Transactions on Knowledge Discovery from Data. 3 (1): 1–58. doi:10.1145/1497577.1497578. S2CID 17363900.
Tanay A, Sharan R, Kupiec M, Shamir R (2004). "Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data". Proceedings of the National Academy of Sciences. 101 (9): 2981–2986. Bibcode:2004PNAS..101.2981T. doi:10.1073/pnas.0308661100. PMC 365731. PMID 14973197.
Abdullah, Ahsan; Hussain, Amir (2006). "A new biclustering technique based on crossing minimization". Neurocomputing. 69 (16–18): 1882–1896. doi:10.1016/j.neucom.2006.02.018.
Reiss DJ, Baliga NS, Bonneau R (2006). "Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks". BMC Bioinformatics. 7: 280–302. doi:10.1186/1471-2105-7-280. PMC 1502140. PMID 16749936.
Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, Gohlmann HW, Shkedy Z, Clevert DA (2010). "FABIA: factor analysis for bicluster acquisition". Bioinformatics. 26 (12): 1520–1527. doi:10.1093/bioinformatics/btq227. PMC 2881408. PMID 20418340.
Orzechowski P, Pańszczyk A, Huang X, Moore JH (2018). "runibic: a Bioconductor package for parallel row-based biclustering of gene expression data". Bioinformatics. 34 (24): 4302–4304. doi:10.1093/bioinformatics/bty512. PMC 6289127. PMID 29939213.
Orzechowski P, Sipper M, Huang X, Moore JH (2018). "EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery". Bioinformatics. 34 (21): 3719–3726. arXiv:1801.03039. doi:10.1093/bioinformatics/bty401. PMC 6198864. PMID 29790909.
Fanaee-T H, Thoresen, M (2020). "Iterative Multi-mode Discretization: Applications to Co-clustering". Discovery Science. Lecture Notes in Computer Science. Vol. 12323. pp. 94–105. doi:10.1007/978-3-030-61527-7_7. hdl:10852/82994. ISBN 978-3-030-61526-0. S2CID 222832035.
Madeira SC, Teixeira MC, Sá-Correia I, Oliveira AL (2010). "Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (7): 153–165. doi:10.1109/TCBB.2008.34. PMID 20150677. S2CID 7369531.
Madeira SC, Oliveira AL (2009). "A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series". Algorithms for Molecular Biology. 4 (8): 8. doi:10.1186/1748-7188-4-8. PMC 2709627. PMID 19497096.
Aguilar-Ruiz JS (2005). "Shifting and scaling patterns from gene expression data". Bioinformatics. 21 (10): 3840–3845. doi:10.1093/bioinformatics/bti641. PMID 16144809.
Bisson G.; Hussain F. (2008). "Chi-Sim: A New Similarity Measure for the Co-clustering Task". 2008 Seventh International Conference on Machine Learning and Applications. pp. 211–217. doi:10.1109/ICMLA.2008.103. ISBN 978-0-7695-3495-4. S2CID 15506600.
Can, F.; Ozkarahan, E. A. (1990). "Concepts and effectiveness of the cover coefficient based clustering methodology for text databases" (PDF). ACM Transactions on Database Systems. 15 (4): 483–517. doi:10.1145/99935.99938. hdl:2374.MIA/246. S2CID 14309214.

handle.net

hdl.handle.net

Fanaee-T H, Thoresen, M (2020). "Iterative Multi-mode Discretization: Applications to Co-clustering". Discovery Science. Lecture Notes in Computer Science. Vol. 12323. pp. 94–105. doi:10.1007/978-3-030-61527-7_7. hdl:10852/82994. ISBN 978-3-030-61526-0. S2CID 222832035.
Can, F.; Ozkarahan, E. A. (1990). "Concepts and effectiveness of the cover coefficient based clustering methodology for text databases" (PDF). ACM Transactions on Database Systems. 15 (4): 483–517. doi:10.1145/99935.99938. hdl:2374.MIA/246. S2CID 14309214.

harvard.edu

ui.adsabs.harvard.edu

Tanay A, Sharan R, Kupiec M, Shamir R (2004). "Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data". Proceedings of the National Academy of Sciences. 101 (9): 2981–2986. Bibcode:2004PNAS..101.2981T. doi:10.1073/pnas.0308661100. PMC 365731. PMID 14973197.

jstor.org

Hartigan JA (1972). "Direct clustering of a data matrix". Journal of the American Statistical Association. 67 (337): 123–9. doi:10.2307/2284710. JSTOR 2284710.

miamioh.edu

sc.lib.miamioh.edu

Can, F.; Ozkarahan, E. A. (1990). "Concepts and effectiveness of the cover coefficient based clustering methodology for text databases" (PDF). ACM Transactions on Database Systems. 15 (4): 483–517. doi:10.1145/99935.99938. hdl:2374.MIA/246. S2CID 14309214.

nb.no

urn.nb.no

Fanaee-T H, Thoresen, M (2020). "Iterative Multi-mode Discretization: Applications to Co-clustering". Discovery Science. Lecture Notes in Computer Science. Vol. 12323. pp. 94–105. doi:10.1007/978-3-030-61527-7_7. hdl:10852/82994. ISBN 978-3-030-61526-0. S2CID 222832035.

nih.gov

pubmed.ncbi.nlm.nih.gov

Van Mechelen I, Bock HH, De Boeck P (2004). "Two-mode clustering methods:a structured overview". Statistical Methods in Medical Research. 13 (5): 363–94. CiteSeerX 10.1.1.706.4201. doi:10.1191/0962280204sm373ra. PMID 15516031. S2CID 19058237.
Madeira SC, Oliveira AL (2004). "Biclustering Algorithms for Biological Data Analysis: A Survey". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (1): 24–45. doi:10.1109/TCBB.2004.2. PMID 17048406. S2CID 206628783.
Tanay A, Sharan R, Kupiec M, Shamir R (2004). "Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data". Proceedings of the National Academy of Sciences. 101 (9): 2981–2986. Bibcode:2004PNAS..101.2981T. doi:10.1073/pnas.0308661100. PMC 365731. PMID 14973197.
Reiss DJ, Baliga NS, Bonneau R (2006). "Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks". BMC Bioinformatics. 7: 280–302. doi:10.1186/1471-2105-7-280. PMC 1502140. PMID 16749936.
Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, Gohlmann HW, Shkedy Z, Clevert DA (2010). "FABIA: factor analysis for bicluster acquisition". Bioinformatics. 26 (12): 1520–1527. doi:10.1093/bioinformatics/btq227. PMC 2881408. PMID 20418340.
Orzechowski P, Pańszczyk A, Huang X, Moore JH (2018). "runibic: a Bioconductor package for parallel row-based biclustering of gene expression data". Bioinformatics. 34 (24): 4302–4304. doi:10.1093/bioinformatics/bty512. PMC 6289127. PMID 29939213.
Orzechowski P, Sipper M, Huang X, Moore JH (2018). "EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery". Bioinformatics. 34 (21): 3719–3726. arXiv:1801.03039. doi:10.1093/bioinformatics/bty401. PMC 6198864. PMID 29790909.
Madeira SC, Teixeira MC, Sá-Correia I, Oliveira AL (2010). "Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (7): 153–165. doi:10.1109/TCBB.2008.34. PMID 20150677. S2CID 7369531.
Madeira SC, Oliveira AL (2009). "A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series". Algorithms for Molecular Biology. 4 (8): 8. doi:10.1186/1748-7188-4-8. PMC 2709627. PMID 19497096.
Aguilar-Ruiz JS (2005). "Shifting and scaling patterns from gene expression data". Bioinformatics. 21 (10): 3840–3845. doi:10.1093/bioinformatics/bti641. PMID 16144809.

ncbi.nlm.nih.gov

Tanay A, Sharan R, Kupiec M, Shamir R (2004). "Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data". Proceedings of the National Academy of Sciences. 101 (9): 2981–2986. Bibcode:2004PNAS..101.2981T. doi:10.1073/pnas.0308661100. PMC 365731. PMID 14973197.
Reiss DJ, Baliga NS, Bonneau R (2006). "Integrated biclustering of heterogeneous genome-wide datasets for the inference of global regulatory networks". BMC Bioinformatics. 7: 280–302. doi:10.1186/1471-2105-7-280. PMC 1502140. PMID 16749936.
Hochreiter S, Bodenhofer U, Heusel M, Mayr A, Mitterecker A, Kasim A, Khamiakova T, Van Sanden S, Lin D, Talloen W, Bijnens L, Gohlmann HW, Shkedy Z, Clevert DA (2010). "FABIA: factor analysis for bicluster acquisition". Bioinformatics. 26 (12): 1520–1527. doi:10.1093/bioinformatics/btq227. PMC 2881408. PMID 20418340.
Orzechowski P, Pańszczyk A, Huang X, Moore JH (2018). "runibic: a Bioconductor package for parallel row-based biclustering of gene expression data". Bioinformatics. 34 (24): 4302–4304. doi:10.1093/bioinformatics/bty512. PMC 6289127. PMID 29939213.
Orzechowski P, Sipper M, Huang X, Moore JH (2018). "EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery". Bioinformatics. 34 (21): 3719–3726. arXiv:1801.03039. doi:10.1093/bioinformatics/bty401. PMC 6198864. PMID 29790909.
Madeira SC, Oliveira AL (2009). "A polynomial time biclustering algorithm for finding approximate expression patterns in gene expression time series". Algorithms for Molecular Biology. 4 (8): 8. doi:10.1186/1748-7188-4-8. PMC 2709627. PMID 19497096.

princeton.edu

cs.princeton.edu

https://www.cs.princeton.edu/courses/archive/fall03/cs597F/Articles/biclustering_of_expression_data.pdf Cheng Y, Church G M. Biclustering of expression data[C]//Ismb. 2000, 8: 93–103.

psu.edu

citeseerx.ist.psu.edu

Van Mechelen I, Bock HH, De Boeck P (2004). "Two-mode clustering methods:a structured overview". Statistical Methods in Medical Research. 13 (5): 363–94. CiteSeerX 10.1.1.706.4201. doi:10.1191/0962280204sm373ra. PMID 15516031. S2CID 19058237.

semanticscholar.org

api.semanticscholar.org

R. Balamurugan; A.M. Natarajan; K. Premalatha (2015). "Stellar-Mass Black Hole Optimization for Biclustering Microarray Gene Expression Data". Applied Artificial Intelligence. 29 (4): 353–381. doi:10.1080/08839514.2015.1016391. S2CID 44624424.
Van Mechelen I, Bock HH, De Boeck P (2004). "Two-mode clustering methods:a structured overview". Statistical Methods in Medical Research. 13 (5): 363–94. CiteSeerX 10.1.1.706.4201. doi:10.1191/0962280204sm373ra. PMID 15516031. S2CID 19058237.
Dhillon, Inderjit S. (2001). "Co-clustering documents and words using bipartite spectral graph partitioning". Proceedings of the seventh ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 269–274. doi:10.1145/502512.502550. ISBN 158113391X. S2CID 11847258.
Dhillon, Inderjit S.; Mallela, Subramanyam; Modha, Dharmendra S. (2003). "Information-theoretic co-clustering". Proceedings of the ninth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 89–98. doi:10.1145/956750.956764. ISBN 1581137370. S2CID 12286784.
Banerjee, Arindam; Dhillon, Inderjit; Ghosh, Joydeep; Merugu, Srujana; Modha, Dharmendra S. (2004). "A generalized maximum entropy approach to bregman co-clustering and matrix approximation". Proceedings of the tenth ACM SIGKDD international conference on Knowledge discovery and data mining. pp. 509–514. doi:10.1145/1014052.1014111. ISBN 1581138881. S2CID 2719002.
Bekkerman, Ron; El-Yaniv, Ran; McCallum, Andrew (2005). "Multi-way distributional clustering via pairwise interactions". Proceedings of the 22nd international conference on Machine learning - ICML '05. pp. 41–48. doi:10.1145/1102351.1102357. ISBN 1595931805. S2CID 858524.
Peeters R (2003). "The maximum edge biclique problem is NP-complete". Discrete Applied Mathematics. 131 (3): 651–654. doi:10.1016/S0166-218X(03)00333-0. S2CID 3102766.
Madeira SC, Oliveira AL (2004). "Biclustering Algorithms for Biological Data Analysis: A Survey". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (1): 24–45. doi:10.1109/TCBB.2004.2. PMID 17048406. S2CID 206628783.
Kriegel, H.-P.; Kröger, P.; Zimek, A. (March 2009). "Clustering High Dimensional Data: A Survey on Subspace Clustering, Pattern-based Clustering, and Correlation Clustering". ACM Transactions on Knowledge Discovery from Data. 3 (1): 1–58. doi:10.1145/1497577.1497578. S2CID 17363900.
Fanaee-T H, Thoresen, M (2020). "Iterative Multi-mode Discretization: Applications to Co-clustering". Discovery Science. Lecture Notes in Computer Science. Vol. 12323. pp. 94–105. doi:10.1007/978-3-030-61527-7_7. hdl:10852/82994. ISBN 978-3-030-61526-0. S2CID 222832035.
Madeira SC, Teixeira MC, Sá-Correia I, Oliveira AL (2010). "Identification of Regulatory Modules in Time Series Gene Expression Data using a Linear Time Biclustering Algorithm". IEEE/ACM Transactions on Computational Biology and Bioinformatics. 1 (7): 153–165. doi:10.1109/TCBB.2008.34. PMID 20150677. S2CID 7369531.
Bisson G.; Hussain F. (2008). "Chi-Sim: A New Similarity Measure for the Co-clustering Task". 2008 Seventh International Conference on Machine Learning and Applications. pp. 211–217. doi:10.1109/ICMLA.2008.103. ISBN 978-0-7695-3495-4. S2CID 15506600.
Can, F.; Ozkarahan, E. A. (1990). "Concepts and effectiveness of the cover coefficient based clustering methodology for text databases" (PDF). ACM Transactions on Database Systems. 15 (4): 483–517. doi:10.1145/99935.99938. hdl:2374.MIA/246. S2CID 14309214.

uvt.nl

pure.uvt.nl

Peeters R (2003). "The maximum edge biclique problem is NP-complete". Discrete Applied Mathematics. 131 (3): 651–654. doi:10.1016/S0166-218X(03)00333-0. S2CID 3102766.