BioPerl (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "BioPerl" in English language version.

Last modified: 07:01:16, 26 December 2025 (UTC)

Ref.Un. Ref.Website

Global rank English rank

1717nih.gov

5^th place

1111doi.org

2^nd place

22web.archive.org

1^st place

22bioperl.org

low place

11archive.org

6^th place

11arxiv.org

49^th place

31^st place

11semanticscholar.org

15^th place

8^th place

archive.org (Global: 6^th place; English: 6^th place)

Khaja R, MacDonald J, Zhang J, Scherer S (2006). "Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes". Gene Mapping, Discovery, and Expression. Methods Mol Biol. Vol. 338. Totowa, N.J. : Humana Press. pp. 9–20. doi:10.1385/1-59745-097-9:9. ISBN 978-1-59745-097-3. PMID 16888347.

arxiv.org (Global: 49^th place; English: 31^st place)

Llabrés, M.; Rocha, J.; Rosselló, F.; Valiente, G. (2006). "On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa". Journal of Mathematical Biology. 53 (3): 340–364. arXiv:cs/0505086. doi:10.1007/s00285-006-0011-4. PMID 16823581. S2CID 1704494.

bioperl.org (Global: low place; English: low place)

"BioPerl publications - BioPerl". Archived from the original on 2007-02-02. Retrieved 2007-01-21. A complete, up-to-date list of BioPerl references
Lincoln Stein (1996). "How Perl saved the human genome project". The Perl Journal. 1 (2). Archived from the original on 2007-02-02. Retrieved 2009-02-25.

doi.org (Global: 2^nd place; English: 2^nd place)

Stajich, J. E.; Block, D.; Boulez, K.; Brenner, S.; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehväslaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.; Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618. doi:10.1101/gr.361602. PMC 187536. PMID 12368254.
Khaja R, MacDonald J, Zhang J, Scherer S (2006). "Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes". Gene Mapping, Discovery, and Expression. Methods Mol Biol. Vol. 338. Totowa, N.J. : Humana Press. pp. 9–20. doi:10.1385/1-59745-097-9:9. ISBN 978-1-59745-097-3. PMID 16888347.
Pan, X.; Stein, L.; Brendel, V. (2005). "SynBrowse: A synteny browser for comparative sequence analysis". Bioinformatics. 21 (17): 3461–3468. doi:10.1093/bioinformatics/bti555. PMID 15994196.
Shah, S. P.; McVicker, G. P.; MacKworth, A. K.; Rogic, S.; Ouellette, B. F. F. (2003). "GeneComber: Combining outputs of gene prediction programs for improved results". Bioinformatics. 19 (10): 1296–1297. doi:10.1093/bioinformatics/btg139. PMID 12835277.
Lenhard, B.; Wasserman, W. W. (2002). "TFBS: Computational framework for transcription factor binding site analysis". Bioinformatics. 18 (8): 1135–1136. doi:10.1093/bioinformatics/18.8.1135. PMID 12176838.
Huang, J.; Gutteridge, A.; Honda, W.; Kanehisa, M. (2006). "MIMOX: A web tool for phage display based epitope mapping". BMC Bioinformatics. 7: 451. doi:10.1186/1471-2105-7-451. PMC 1618411. PMID 17038191.
Catanho, M.; Mascarenhas, D.; Degrave, W.; De Miranda, A. B. ?L. (2006). "BioParser". Applied Bioinformatics. 5 (1): 49–53. doi:10.2165/00822942-200605010-00007. PMID 16539538.
Croce, O.; Lamarre, M. L.; Christen, R. (2006). "Querying the public databases for sequences using complex keywords contained in the feature lines". BMC Bioinformatics. 7: 45. doi:10.1186/1471-2105-7-45. PMC 1403806. PMID 16441875.
Landsteiner, B. R.; Olson, M. R.; Rutherford, R. (2005). "Current Comparative Table (CCT) automates customized searches of dynamic biological databases". Nucleic Acids Research. 33 (Web Server issue): W770–W773. doi:10.1093/nar/gki432. PMC 1160193. PMID 15980582.
Llabrés, M.; Rocha, J.; Rosselló, F.; Valiente, G. (2006). "On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa". Journal of Mathematical Biology. 53 (3): 340–364. arXiv:cs/0505086. doi:10.1007/s00285-006-0011-4. PMID 16823581. S2CID 1704494.
Pampanwar, V.; Engler, F.; Hatfield, J.; Blundy, S.; Gupta, G.; Soderlund, C. (2005). "FPC Web Tools for Rice, Maize, and Distribution". Plant Physiology. 138 (1): 116–126. doi:10.1104/pp.104.056291. PMC 1104167. PMID 15888684.

nih.gov (Global: 5^th place; English: 5^th place)

pubmed.ncbi.nlm.nih.gov

Stajich, J. E.; Block, D.; Boulez, K.; Brenner, S.; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehväslaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.; Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618. doi:10.1101/gr.361602. PMC 187536. PMID 12368254.
Khaja R, MacDonald J, Zhang J, Scherer S (2006). "Methods for identifying and mapping recent segmental and gene duplications in eukaryotic genomes". Gene Mapping, Discovery, and Expression. Methods Mol Biol. Vol. 338. Totowa, N.J. : Humana Press. pp. 9–20. doi:10.1385/1-59745-097-9:9. ISBN 978-1-59745-097-3. PMID 16888347.
Pan, X.; Stein, L.; Brendel, V. (2005). "SynBrowse: A synteny browser for comparative sequence analysis". Bioinformatics. 21 (17): 3461–3468. doi:10.1093/bioinformatics/bti555. PMID 15994196.
Shah, S. P.; McVicker, G. P.; MacKworth, A. K.; Rogic, S.; Ouellette, B. F. F. (2003). "GeneComber: Combining outputs of gene prediction programs for improved results". Bioinformatics. 19 (10): 1296–1297. doi:10.1093/bioinformatics/btg139. PMID 12835277.
Lenhard, B.; Wasserman, W. W. (2002). "TFBS: Computational framework for transcription factor binding site analysis". Bioinformatics. 18 (8): 1135–1136. doi:10.1093/bioinformatics/18.8.1135. PMID 12176838.
Huang, J.; Gutteridge, A.; Honda, W.; Kanehisa, M. (2006). "MIMOX: A web tool for phage display based epitope mapping". BMC Bioinformatics. 7: 451. doi:10.1186/1471-2105-7-451. PMC 1618411. PMID 17038191.
Catanho, M.; Mascarenhas, D.; Degrave, W.; De Miranda, A. B. ?L. (2006). "BioParser". Applied Bioinformatics. 5 (1): 49–53. doi:10.2165/00822942-200605010-00007. PMID 16539538.
Wei, X.; Kuhn, D. N.; Narasimhan, G. (2003). "Degenerate primer design via clustering". Proceedings. IEEE Computer Society Bioinformatics Conference. 2: 75–83. PMID 16452781.
Croce, O.; Lamarre, M. L.; Christen, R. (2006). "Querying the public databases for sequences using complex keywords contained in the feature lines". BMC Bioinformatics. 7: 45. doi:10.1186/1471-2105-7-45. PMC 1403806. PMID 16441875.
Landsteiner, B. R.; Olson, M. R.; Rutherford, R. (2005). "Current Comparative Table (CCT) automates customized searches of dynamic biological databases". Nucleic Acids Research. 33 (Web Server issue): W770–W773. doi:10.1093/nar/gki432. PMC 1160193. PMID 15980582.
Llabrés, M.; Rocha, J.; Rosselló, F.; Valiente, G. (2006). "On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa". Journal of Mathematical Biology. 53 (3): 340–364. arXiv:cs/0505086. doi:10.1007/s00285-006-0011-4. PMID 16823581. S2CID 1704494.
Pampanwar, V.; Engler, F.; Hatfield, J.; Blundy, S.; Gupta, G.; Soderlund, C. (2005). "FPC Web Tools for Rice, Maize, and Distribution". Plant Physiology. 138 (1): 116–126. doi:10.1104/pp.104.056291. PMC 1104167. PMID 15888684.

ncbi.nlm.nih.gov

Stajich, J. E.; Block, D.; Boulez, K.; Brenner, S.; Chervitz, S.; Dagdigian, C.; Fuellen, G.; Gilbert, J.; Korf, I.; Lapp, H.; Lehväslaiho, H.; Matsalla, C.; Mungall, C. J.; Osborne, B. I.; Pocock, M. R.; Schattner, P.; Senger, M.; Stein, L. D.; Stupka, E.; Wilkinson, M. D.; Birney, E. (2002). "The BioPerl Toolkit: Perl Modules for the Life Sciences". Genome Research. 12 (10): 1611–1618. doi:10.1101/gr.361602. PMC 187536. PMID 12368254.
Huang, J.; Gutteridge, A.; Honda, W.; Kanehisa, M. (2006). "MIMOX: A web tool for phage display based epitope mapping". BMC Bioinformatics. 7: 451. doi:10.1186/1471-2105-7-451. PMC 1618411. PMID 17038191.
Croce, O.; Lamarre, M. L.; Christen, R. (2006). "Querying the public databases for sequences using complex keywords contained in the feature lines". BMC Bioinformatics. 7: 45. doi:10.1186/1471-2105-7-45. PMC 1403806. PMID 16441875.
Landsteiner, B. R.; Olson, M. R.; Rutherford, R. (2005). "Current Comparative Table (CCT) automates customized searches of dynamic biological databases". Nucleic Acids Research. 33 (Web Server issue): W770–W773. doi:10.1093/nar/gki432. PMC 1160193. PMID 15980582.
Pampanwar, V.; Engler, F.; Hatfield, J.; Blundy, S.; Gupta, G.; Soderlund, C. (2005). "FPC Web Tools for Rice, Maize, and Distribution". Plant Physiology. 138 (1): 116–126. doi:10.1104/pp.104.056291. PMC 1104167. PMID 15888684.

semanticscholar.org (Global: 15^th place; English: 8^th place)

api.semanticscholar.org

Llabrés, M.; Rocha, J.; Rosselló, F.; Valiente, G. (2006). "On the Ancestral Compatibility of Two Phylogenetic Trees with Nested Taxa". Journal of Mathematical Biology. 53 (3): 340–364. arXiv:cs/0505086. doi:10.1007/s00285-006-0011-4. PMID 16823581. S2CID 1704494.

web.archive.org (Global: 1^st place; English: 1^st place)

"BioPerl publications - BioPerl". Archived from the original on 2007-02-02. Retrieved 2007-01-21. A complete, up-to-date list of BioPerl references
Lincoln Stein (1996). "How Perl saved the human genome project". The Perl Journal. 1 (2). Archived from the original on 2007-02-02. Retrieved 2009-02-25.

BioPerl (English Wikipedia)

archive.org (Global: 6th place; English: 6th place)

arxiv.org (Global: 49th place; English: 31st place)