Biofilm (English Wikipedia)

Chua SL, Hultqvist LD, Yuan M, Rybtke M, Nielsen TE, Givskov M, et al. (August 2015). "In vitro and in vivo generation and characterization of Pseudomonas aeruginosa biofilm-dispersed cells via c-di-GMP manipulation". Nat Protoc. 10 (8): 1165–80. doi:10.1038/nprot.2015.067. hdl:10356/84100. PMID 26158442. S2CID 20235088.
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Abee T, Kovács AT, Kuipers OP, van der Veen S (April 2011). "Biofilm formation and dispersal in Gram-positive bacteria" (PDF). Current Opinion in Biotechnology. 22 (2): 172–9. doi:10.1016/j.copbio.2010.10.016. hdl:11370/999da2a4-d509-471b-bab5-085dac6ff681. PMID 21109420. S2CID 22024410. Archived (PDF) from the original on 23 July 2018. Retrieved 21 December 2018.
Liu SY, Leung MM, Fang JK, Chua SL (15 January 2021). "Engineering a microbial 'trap and release' mechanism for microplastics removal". Chemical Engineering Journal. 404: 127079. Bibcode:2021ChEnJ.40427079L. doi:10.1016/j.cej.2020.127079. hdl:10397/88307. ISSN 1385-8947. S2CID 224972583.
Kwok TY, Ma Y, Chua SL (April 2022). "Biofilm dispersal induced by mechanical cutting leads to heightened foodborne pathogen dissemination". Food Microbiology. 102: 103914. doi:10.1016/j.fm.2021.103914. hdl:10397/100037. PMID 34809940. S2CID 244234814.
Azeredo J, Azevedo NF, Briandet R, Cerca N, Coenye T, Costa AR, et al. (May 2017). "Critical review on biofilm methods". Critical Reviews in Microbiology. 43 (3): 313–351. doi:10.1080/1040841X.2016.1208146. hdl:1822/45004. PMID 27868469. S2CID 3991858.

harvard.edu

ui.adsabs.harvard.edu

Hoffman LR, D'Argenio DA, MacCoss MJ, Zhang Z, Jones RA, Miller SI (August 2005). "Aminoglycoside antibiotics induce bacterial biofilm formation". Nature. 436 (7054): 1171–5. Bibcode:2005Natur.436.1171H. doi:10.1038/nature03912. PMID 16121184. S2CID 4404961. (primary source)
Momeni B (June 2018). "Division of Labor: How Microbes Split Their Responsibility". Current Biology. 28 (12): R697–R699. Bibcode:2018CBio...28.R697M. doi:10.1016/j.cub.2018.05.024. PMID 29920261. S2CID 49315067.
Wang F, Cvirkaite-Krupovic V, Krupovic M, Egelman EH (June 2022). "Archaeal bundling pili of Pyrobaculum calidifontis reveal similarities between archaeal and bacterial biofilms". Proceedings of the National Academy of Sciences of the United States of America. 119 (26): e2207037119. Bibcode:2022PNAS..11907037W. doi:10.1073/pnas.2207037119. PMC 9245690. PMID 35727984.
Li S, Liu SY, Chan SY, Chua SL (January 2022). "Biofilm matrix cloaks bacterial quorum sensing chemoattractants from predator detection". The ISME Journal. 16 (5): 1388–1396. Bibcode:2022ISMEJ..16.1388L. doi:10.1038/s41396-022-01190-2. PMC 9038794. PMID 35034106.
Izano EA, Amarante MA, Kher WB, Kaplan JB (January 2008). "Differential roles of poly-N-acetylglucosamine surface polysaccharide and extracellular DNA in Staphylococcus aureus and Staphylococcus epidermidis biofilms". Applied and Environmental Microbiology. 74 (2): 470–6. Bibcode:2008ApEnM..74..470I. doi:10.1128/AEM.02073-07. PMC 2223269. PMID 18039822.
Chua SL, Liu Y, Yam JK, Tolker-Nielsen T, Kjelleberg S, Givskov M, et al. (2014). "Dispersed cells represent a distinct stage in the transition from bacterial biofilm to planktonic lifestyles". Nature Communications. 5: 4462. Bibcode:2014NatCo...5.4462C. doi:10.1038/ncomms5462. PMID 25042103.
Ma Y, Deng Y, Hua H, Khoo BL, Chua SL (August 2023). "Distinct bacterial population dynamics and disease dissemination after biofilm dispersal and disassembly". The ISME Journal. 17 (8): 1290–1302. Bibcode:2023ISMEJ..17.1290M. doi:10.1038/s41396-023-01446-5. PMC 10356768. PMID 37270584.
Stoodley P, Debeer D, Lewandowski Z (August 1994). "Liquid flow in biofilm systems". Applied and Environmental Microbiology. 60 (8): 2711–6. Bibcode:1994ApEnM..60.2711S. doi:10.1128/aem.60.8.2711-2716.1994. PMC 201713. PMID 16349345.
Nihorimbere V, Cawoy H, Seyer A, Brunelle A, Thonart P, Ongena M (January 2012). "Impact of rhizosphere factors on cyclic lipopeptide signature from the plant beneficial strain Bacillus amyloliquefaciens S499". FEMS Microbiology Ecology. 79 (1): 176–91. Bibcode:2012FEMME..79..176N. doi:10.1111/j.1574-6941.2011.01208.x. PMID 22029651.
van Loon LC (5 June 2007). "Plant responses to plant growth-promoting rhizobacteria". European Journal of Plant Pathology. 119 (3): 243–254. Bibcode:2007EJPP..119..243V. doi:10.1007/s10658-007-9165-1. ISSN 0929-1873.
Van Wees SC, Van der Ent S, Pieterse CM (August 2008). "Plant immune responses triggered by beneficial microbes". Current Opinion in Plant Biology. 11 (4): 443–8. Bibcode:2008COPB...11..443V. doi:10.1016/j.pbi.2008.05.005. hdl:1874/30010. PMID 18585955. S2CID 25880745.
Holguin G, Bashan Y (December 1996). "Nitrogen-fixation by Azospirillum brasilense Cd is promoted when co-cultured with a mangrove rhizosphere bacterium (Staphylococcus sp.)". Soil Biology and Biochemistry. 28 (12): 1651–1660. Bibcode:1996SBiBi..28.1651H. doi:10.1016/s0038-0717(96)00251-9. ISSN 0038-0717.
Randal Bollinger R, Barbas AS, Bush EL, Lin SS, Parker W (December 2007). "Biofilms in the large bowel suggest an apparent function of the human vermiform appendix". Journal of Theoretical Biology. 249 (4): 826–31. Bibcode:2007JThBi.249..826R. doi:10.1016/j.jtbi.2007.08.032. PMID 17936308.
Characklis WG, Nevimons MJ, Picologlou BF (1981). "Influence of Fouling Biofilms on Heat Transfer". Heat Transfer Engineering. 3 (1): 23–37. Bibcode:1981HTrEn...3...23C. doi:10.1080/01457638108939572. Archived from the original on 19 August 2022. Retrieved 19 December 2022.
Schwermer CU, Lavik G, Abed RM, Dunsmore B, Ferdelman TG, Stoodley P, et al. (May 2008). "Impact of nitrate on the structure and function of bacterial biofilm communities in pipelines used for injection of seawater into oil fields". Applied and Environmental Microbiology. 74 (9): 2841–51. Bibcode:2008ApEnM..74.2841S. doi:10.1128/AEM.02027-07. PMC 2394879. PMID 18344353.
Freese EB (April 1961). "Transitions and transversions induced by depurinating agents". Proceedings of the National Academy of Sciences of the United States of America. 47 (4): 540–5. Bibcode:1961PNAS...47..540B. doi:10.1073/pnas.47.4.540. PMC 221484. PMID 13701660.
Michod RE, Bernstein H, Nedelcu AM (May 2008). "Adaptive value of sex in microbial pathogens". Infect. Genet. Evol. 8 (3): 267–85. Bibcode:2008InfGE...8..267M. doi:10.1016/j.meegid.2008.01.002. PMID 18295550.http://www.hummingbirds.arizona.edu/Faculty/Michod/Downloads/IGE%20review%20sex.pdf Archived 11 May 2020 at the Wayback Machine
Li S, Liu SY, Chan SY, Chua SL (May 2022). "Biofilm matrix cloaks bacterial quorum sensing chemoattractants from predator detection". The ISME Journal. 16 (5): 1388–1396. Bibcode:2022ISMEJ..16.1388L. doi:10.1038/s41396-022-01190-2. PMC 9038794. PMID 35034106.
Rossi F, De Philippis R (April 2015). "Role of cyanobacterial exopolysaccharides in phototrophic biofilms and in complex microbial mats". Life. 5 (2): 1218–38. Bibcode:2015Life....5.1218R. doi:10.3390/life5021218. PMC 4500136. PMID 25837843.
Joubert LM, Wolfaardt GM, Botha A (August 2006). "Microbial exopolymers link predator and prey in a model yeast biofilm system". Microb. Ecol. 52 (2): 187–97. Bibcode:2006MicEc..52..187J. doi:10.1007/s00248-006-9063-7. PMID 16897306. S2CID 20431229.
Van Colen C, Underwood GC, Serôdio J, Paterson DM (2014). "Ecology of intertidal microbial biofilms: Mechanisms, patterns and future research needs". Journal of Sea Research. 92: 2–5. Bibcode:2014JSR....92....2V. doi:10.1016/j.seares.2014.07.003.
Aslam SN, Cresswell-Maynard T, Thomas DN, Underwood GJ (December 2012). "Production and Characterization of the Intra- and Extracellular Carbohydrates and Polymeric Substances (EPS) of Three Sea-Ice Diatom Species, and Evidence for a Cryoprotective Role for EPS". J. Phycol. 48 (6): 1494–509. Bibcode:2012JPcgy..48.1494A. doi:10.1111/jpy.12004. PMID 27009999. S2CID 9226690.
Capoor MN, Ruzicka F, Schmitz JE, James GA, Machackova T, Jancalek R, et al. (3 April 2017). "Propionibacterium acnes biofilm is present in intervertebral discs of patients undergoing microdiscectomy". PLOS ONE. 12 (4): e0174518. Bibcode:2017PLoSO..1274518C. doi:10.1371/journal.pone.0174518. PMC 5378350. PMID 28369127.
Singh PK, Parsek MR, Greenberg EP, Welsh MJ (May 2002). "A component of innate immunity prevents bacterial biofilm development". Nature. 417 (6888): 552–555. Bibcode:2002Natur.417..552S. doi:10.1038/417552a. PMID 12037568. S2CID 4423528.
Wei H, Håvarstein LS (August 2012). "Fratricide is essential for efficient gene transfer between pneumococci in biofilms". Appl. Environ. Microbiol. 78 (16): 5897–905. Bibcode:2012ApEnM..78.5897W. doi:10.1128/AEM.01343-12. PMC 3406168. PMID 22706053.
Wang VB, Chua SL, Cai Z, Sivakumar K, Zhang Q, Kjelleberg S, et al. (March 2014). "A stable synergistic microbial consortium for simultaneous azo dye removal and bioelectricity generation". Bioresource Technology. 155: 71–76. Bibcode:2014BiTec.155...71W. doi:10.1016/j.biortech.2013.12.078. PMID 24434696.
Wang VB, Chua SL, Cao B, Seviour T, Nesatyy VJ, Marsili E, et al. (2013). "Engineering PQS biosynthesis pathway for enhancement of bioelectricity production in pseudomonas aeruginosa microbial fuel cells". PLOS ONE. 8 (5): e63129. Bibcode:2013PLoSO...863129W. doi:10.1371/journal.pone.0063129. PMC 3659106. PMID 23700414.
Chan SY, Wong MW, Kwan BT, Fang JK, Chua SL (12 October 2022). "Microbial–Enzymatic Combinatorial Approach to Capture and Release Microplastics". Environmental Science & Technology Letters. 9 (11): 975–982. Bibcode:2022EnSTL...9..975C. doi:10.1021/acs.estlett.2c00558. ISSN 2328-8930. S2CID 252892619.
Liu SY, Leung MM, Fang JK, Chua SL (15 January 2021). "Engineering a microbial 'trap and release' mechanism for microplastics removal". Chemical Engineering Journal. 404: 127079. Bibcode:2021ChEnJ.40427079L. doi:10.1016/j.cej.2020.127079. hdl:10397/88307. ISSN 1385-8947. S2CID 224972583.
Qian PY, Lau SC, Dahms HU, Dobretsov S, Harder T (2007). "Marine biofilms as mediators of colonization by marine macroorganisms: implications for antifouling and aquaculture". Marine Biotechnology. 9 (4): 399–410. Bibcode:2007MarBt...9..399Q. doi:10.1007/s10126-007-9001-9. PMID 17497196. S2CID 7614961.
Cai W, De La Fuente L, Arias CR (September 2013). "Biofilm formation by the fish pathogen Flavobacterium columnare: development and parameters affecting surface attachment". Applied and Environmental Microbiology. 79 (18): 5633–42. Bibcode:2013ApEnM..79.5633C. doi:10.1128/AEM.01192-13. PMC 3754160. PMID 23851087.
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Windler M, Leinweber K, Bartulos CR, Philipp B, Kroth PG (April 2015). "Biofilm and capsule formation of the diatom Achnanthidium minutissimum are affected by a bacterium". J. Phycol. 51 (2): 343–55. Bibcode:2015JPcgy..51..343W. doi:10.1111/jpy.12280. PMID 26986529. S2CID 1446573.
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horizonpress.com

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libretexts.org

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montana.edu

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Stewart PS, Costerton JW (July 2001). "Antibiotic resistance of bacteria in biofilms". Lancet. 358 (9276): 135–8. doi:10.1016/S0140-6736(01)05321-1. PMID 11463434. S2CID 46125592.
Characklis WG, Nevimons MJ, Picologlou BF (1981). "Influence of Fouling Biofilms on Heat Transfer". Heat Transfer Engineering. 3 (1): 23–37. Bibcode:1981HTrEn...3...23C. doi:10.1080/01457638108939572. Archived from the original on 19 August 2022. Retrieved 19 December 2022.

cs.montana.edu

"Introduction to Biofilms: Desirable and undesirable impacts of biofilm". Archived from the original on 22 June 2008. (primary source)

nbn-resolving.de

Windler M, Leinweber K, Bartulos CR, Philipp B, Kroth PG (April 2015). "Biofilm and capsule formation of the diatom Achnanthidium minutissimum are affected by a bacterium". J. Phycol. 51 (2): 343–55. Bibcode:2015JPcgy..51..343W. doi:10.1111/jpy.12280. PMID 26986529. S2CID 1446573.
Buhmann M, Kroth PG, Schleheck D (February 2012). "Photoautotrophic-heterotrophic biofilm communities: a laboratory incubator designed for growing axenic diatoms and bacteria in defined mixed-species biofilms". Environ Microbiol Rep. 4 (1): 133–40. Bibcode:2012EnvMR...4..133B. doi:10.1111/j.1758-2229.2011.00315.x. PMID 23757240.

nih.gov

pubmed.ncbi.nlm.nih.gov

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Ma Y, Deng Y, Hua H, Khoo BL, Chua SL (August 2023). "Distinct bacterial population dynamics and disease dissemination after biofilm dispersal and disassembly". The ISME Journal. 17 (8): 1290–1302. Bibcode:2023ISMEJ..17.1290M. doi:10.1038/s41396-023-01446-5. PMC 10356768. PMID 37270584.
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