Bioinformatics (English Wikipedia)

Hesper B, Hogeweg P (2021). "Bio-informatics: a working concept. A translation of "Bio-informatica: een werkconcept" by B. Hesper and P. Hogeweg". arXiv:2111.11832v1 [q-bio.OT].
Tsourakakis CE, Tolliver D, Tsiarli MA, Shackney S, Schwartz R (2010). "CGHTRIMMER: Discretizing noisy Array CGH Data". arXiv:1002.4438 [q-bio.GN].
Berezovsky IN, Zeldovich KB, Shakhnovich EI (2007). "Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins". PLOS Computational Biology. 3 (3): e52. arXiv:q-bio/0607003. Bibcode:2007PLSCB...3...52B. doi:10.1371/journal.pcbi.0030052. PMC 1829478. PMID 17381236.

books.google.com (Global: 3^rd place; English: 3^rd place)

Nisbet R, Elder IV J, Miner G (2009). "Bioinformatics". Handbook of Statistical Analysis and Data Mining Applications. Academic Press. p. 328. ISBN 978-0-08-091203-5.

britannica.com (Global: 40^th place; English: 58^th place)

Lesk AM (26 July 2013). "Bioinformatics". Encyclopaedia Britannica. Archived from the original on 14 April 2021. Retrieved 17 April 2017.

doi.org (Global: 2^nd place; English: 2^nd place)

Sim AY, Minary P, Levitt M (June 2012). "Modeling nucleic acids". Current Opinion in Structural Biology. 22 (3): 273–8. doi:10.1016/j.sbi.2012.03.012. PMC 4028509. PMID 22538125.
Dawson WK, Maciejczyk M, Jankowska EJ, Bujnicki JM (July 2016). "Coarse-grained modeling of RNA 3D structure". Methods. 103: 138–56. doi:10.1016/j.ymeth.2016.04.026. PMID 27125734.
Kmiecik S, Gront D, Kolinski M, Wieteska L, Dawid AE, Kolinski A (July 2016). "Coarse-Grained Protein Models and Their Applications". Chemical Reviews. 116 (14): 7898–936. doi:10.1021/acs.chemrev.6b00163. PMID 27333362.
Joyce AP, Zhang C, Bradley P, Havranek JJ (January 2015). "Structure-based modeling of protein: DNA specificity". Briefings in Functional Genomics. 14 (1): 39–49. doi:10.1093/bfgp/elu044. PMC 4366589. PMID 25414269.
Spiga E, Degiacomi MT, Dal Peraro M (2014). "New Strategies for Integrative Dynamic Modeling of Macromolecular Assembly". In Karabencheva-Christova T (ed.). Biomolecular Modelling and Simulations. Advances in Protein Chemistry and Structural Biology. Vol. 96. Academic Press. pp. 77–111. doi:10.1016/bs.apcsb.2014.06.008. ISBN 978-0-12-800013-7. PMID 25443955.
Ciemny M, Kurcinski M, Kamel K, Kolinski A, Alam N, Schueler-Furman O, et al. (August 2018). "Protein-peptide docking: opportunities and challenges". Drug Discovery Today. 23 (8): 1530–1537. doi:10.1016/j.drudis.2018.05.006. PMID 29733895.
Ouzounis CA, Valencia A (2003). "Early bioinformatics: the birth of a discipline—a personal view". Bioinformatics. 19 (17): 2176–2190. doi:10.1093/bioinformatics/btg309. PMID 14630646.
Hogeweg P (2011). "The Roots of Bioinformatics in Theoretical Biology". PLOS Computational Biology. 7 (3) e1002021. Bibcode:2011PLSCB...7E2021H. doi:10.1371/journal.pcbi.1002021. PMC 3068925. PMID 21483479.
Hogeweg P (1978). "Simulating the growth of cellular forms". Simulation. 31 (3): 90–96. doi:10.1177/003754977803100305. S2CID 61206099.
Sanger F, Tuppy H (1951). "The Amino-acid Sequence in the Phenylalanyl Chain of Insulin. I. The identification of lower peptides from partial hydrolysates". Biochemical Journal. 49 (4): 463–81. doi:10.1042/bj0490463. PMC 1197535. PMID 14886310.
Sanger F, Thompson EO (1953). "The Amino-acid Sequence in the Glycyl Chain of Insulin. I. The identification of lower peptides from partial hydrolysates". Biochemical Journal. 53 (3): 353–66. doi:10.1042/bj0530353. PMC 1198157. PMID 13032078.
Eck RV, Dayhoff MO (April 1966). "Evolution of the Structure of Ferredoxin Based on Living Relics of Primitive Amino Acid Sequences". Science. 152 (3720): 363–6. Bibcode:1966Sci...152..363E. doi:10.1126/science.152.3720.363. PMID 17775169. S2CID 23208558.
Johnson G, Wu TT (January 2000). "Kabat database and its applications: 30 years after the first variability plot". Nucleic Acids Research. 28 (1): 214–8. doi:10.1093/nar/28.1.214. PMC 102431. PMID 10592229.
Erickson JW, Altman GG (1979). "A Search for Patterns in the Nucleotide Sequence of the MS2 Genome". Journal of Mathematical Biology. 7 (3): 219–230. doi:10.1007/BF00275725. S2CID 85199492.
Shulman MJ, Steinberg CM, Westmoreland N (February 1981). "The coding function of nucleotide sequences can be discerned by statistical analysis". Journal of Theoretical Biology. 88 (3): 409–20. Bibcode:1981JThBi..88..409S. doi:10.1016/0022-5193(81)90274-5. PMID 6456380.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, et al. (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL (January 2008). "GenBank". Nucleic Acids Research. 36 (Database issue): D25-30. doi:10.1093/nar/gkm929. PMC 2238942. PMID 18073190.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, et al. (July 1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Stein L (2001). "Genome annotation: from sequence to biology". Nature. 2 (7): 493–503. doi:10.1038/35080529. PMID 11433356. S2CID 12044602.
Erdin S, Lisewski AM, Lichtarge O (April 2011). "Protein function prediction: towards integration of similarity metrics". Current Opinion in Structural Biology. 21 (2): 180–8. doi:10.1016/j.sbi.2011.02.001. PMC 3120633. PMID 21353529.
Carvajal-Rodríguez A (March 2010). "Simulation of genes and genomes forward in time". Current Genomics. 11 (1): 58–61. doi:10.2174/138920210790218007. PMC 2851118. PMID 20808525.
Carter NP, Fiegler H, Piper J (October 2002). "Comparative analysis of comparative genomic hybridization microarray technologies: report of a workshop sponsored by the Wellcome Trust". Cytometry. 49 (2): 43–8. doi:10.1002/cyto.10153. PMID 12357458.
Chaudhari NM, Gupta VK, Dutta C (April 2016). "BPGA- an ultra-fast pan-genome analysis pipeline". Scientific Reports. 6 24373. Bibcode:2016NatSR...624373C. doi:10.1038/srep24373. PMC 4829868. PMID 27071527.
Aston KI (May 2014). "Genetic susceptibility to male infertility: news from genome-wide association studies". Andrology. 2 (3): 315–21. doi:10.1111/j.2047-2927.2014.00188.x. PMID 24574159. S2CID 206007180.
Véron A, Blein S, Cox DG (2014). "Genome-wide association studies and the clinic: a focus on breast cancer". Biomarkers in Medicine. 8 (2): 287–96. doi:10.2217/bmm.13.121. PMID 24521025.
Tosto G, Reitz C (October 2013). "Genome-wide association studies in Alzheimer's disease: a review". Current Neurology and Neuroscience Reports. 13 (10) 381. doi:10.1007/s11910-013-0381-0. PMC 3809844. PMID 23954969.
Londin E, Yadav P, Surrey S, Kricka LJ, Fortina P (2013). "Use of linkage analysis, genome-wide association studies, and next-generation sequencing in the identification of disease-causing mutations". Pharmacogenomics. Methods in Molecular Biology. Vol. 1015. pp. 127–46. doi:10.1007/978-1-62703-435-7_8. ISBN 978-1-62703-434-0. PMID 23824853.
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, et al. (June 2009). "Potential etiologic and functional implications of genome-wide association loci for human diseases and traits". Proceedings of the National Academy of Sciences of the United States of America. 106 (23): 9362–7. Bibcode:2009PNAS..106.9362H. doi:10.1073/pnas.0903103106. PMC 2687147. PMID 19474294.
Hall LO (2010). "Finding the right genes for disease and prognosis prediction". 2010 International Conference on System Science and Engineering. pp. 1–2. doi:10.1109/ICSSE.2010.5551766. ISBN 978-1-4244-6472-2. S2CID 21622726.
Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, et al. (October 2009). "Finding the missing heritability of complex diseases". Nature. 461 (7265): 747–753. Bibcode:2009Natur.461..747M. doi:10.1038/nature08494. PMC 2831613. PMID 19812666.
Wainschtein P, Jain D, Zheng Z, Aslibekyan S, Becker D, Bi W, et al. (March 2022). "Assessing the contribution of rare variants to complex trait heritability from whole-genome sequence data". Nature Genetics. 54 (3): 263–273. doi:10.1038/s41588-021-00997-7. PMC 9119698. PMID 35256806.
Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, et al. (February 2021). "Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program". Nature. 590 (7845): 290–299. Bibcode:2021Natur.590..290T. doi:10.1038/s41586-021-03205-y. PMC 7875770. PMID 33568819.{{cite journal}}: CS1 maint: overridden setting (link)
Li X, Li Z, Zhou H, Gaynor SM, Liu Y, Chen H, et al. (September 2020). "Dynamic incorporation of multiple in silico functional annotations empowers rare variant association analysis of large whole-genome sequencing studies at scale". Nature Genetics. 52 (9): 969–983. doi:10.1038/s41588-020-0676-4. PMC 7483769. PMID 32839606.
Li Z, Li X, Zhou H, Gaynor SM, Selvaraj MS, Arapoglou T, et al. (December 2022). "A framework for detecting noncoding rare-variant associations of large-scale whole-genome sequencing studies". Nature Methods. 19 (12): 1599–1611. doi:10.1038/s41592-022-01640-x. PMC 10008172. PMID 36303018. S2CID 243873361.
"STAARpipeline: an all-in-one rare-variant tool for biobank-scale whole-genome sequencing data". Nature Methods. 19 (12): 1532–1533. December 2022. doi:10.1038/s41592-022-01641-w. PMID 36316564. S2CID 253246835.
Li X, Quick C, Zhou H, Gaynor SM, Liu Y, Chen H, et al. (January 2023). "Powerful, scalable and resource-efficient meta-analysis of rare variant associations in large whole genome sequencing studies". Nature Genetics. 55 (1): 154–164. doi:10.1038/s41588-022-01225-6. PMC 10084891. PMID 36564505. S2CID 255084231.
Berezovsky IN, Zeldovich KB, Shakhnovich EI (2007). "Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins". PLOS Computational Biology. 3 (3): e52. arXiv:q-bio/0607003. Bibcode:2007PLSCB...3...52B. doi:10.1371/journal.pcbi.0030052. PMC 1829478. PMID 17381236.
Vazquez M, de la Torre V, Valencia A (27 December 2012). "Chapter 14: Cancer genome analysis". PLOS Computational Biology. 8 (12) e1002824. Bibcode:2012PLSCB...8E2824V. doi:10.1371/journal.pcbi.1002824. PMC 3531315. PMID 23300415.
Hye-Jung EC, Jaswinder K, Martin K, Samuel AA, Marco AM (2014). "Second-Generation Sequencing for Cancer Genome Analysis". In Dellaire G, Berman JN, Arceci RJ (eds.). Cancer Genomics. Boston (US): Academic Press. pp. 13–30. doi:10.1016/B978-0-12-396967-5.00002-5. ISBN 978-0-12-396967-5.
Grau J, Ben-Gal I, Posch S, Grosse I (July 2006). "VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees". Nucleic Acids Research. 34 (Web Server issue): W529-33. doi:10.1093/nar/gkl212. PMC 1538886. PMID 16845064.
Thul PJ, Åkesson L, Wiking M, Mahdessian D, Geladaki A, Ait Blal H, et al. (May 2017). "A subcellular map of the human proteome". Science. 356 (6340) eaal3321. doi:10.1126/science.aal3321. PMID 28495876. S2CID 10744558.
Ay F, Noble WS (September 2015). "Analysis methods for studying the 3D architecture of the genome". Genome Biology. 16 (1) 183. doi:10.1186/s13059-015-0745-7. PMC 4556012. PMID 26328929.
Kryshtafovych A, Schwede T, Topf M, Fidelis K, Moult J (2019). "Critical Assessment of Methods of Protein Structure Prediction (CASP) – Round XIII". Proteins. 87 (12): 1011–1020. doi:10.1002/prot.25823. PMC 6927249. PMID 31589781.
Hoy JA, Robinson H, Trent JT, Kakar S, Smagghe BJ, Hargrove MS (August 2007). "Plant hemoglobins: a molecular fossil record for the evolution of oxygen transport". Journal of Molecular Biology. 371 (1): 168–79. doi:10.1016/j.jmb.2007.05.029. PMID 17560601.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, et al. (August 2021). "Highly accurate protein structure prediction with AlphaFold". Nature. 596 (7873): 583–589. Bibcode:2021Natur.596..583J. doi:10.1038/s41586-021-03819-2. ISSN 1476-4687. PMC 8371605. PMID 34265844.
Titz B, Rajagopala SV, Goll J, Häuser R, McKevitt MT, Palzkill T, et al. (May 2008). Hall N (ed.). "The binary protein interactome of Treponema pallidum--the syphilis spirochete". PLOS ONE. 3 (5) e2292. Bibcode:2008PLoSO...3.2292T. doi:10.1371/journal.pone.0002292. PMC 2386257. PMID 18509523.
Simonyan V, Goecks J, Mazumder R (2017). "Biocompute Objects-A Step towards Evaluation and Validation of Biomedical Scientific Computations". PDA Journal of Pharmaceutical Science and Technology. 71 (2): 136–146. doi:10.5731/pdajpst.2016.006734. PMC 5510742. PMID 27974626.
Alterovitz G, Dean D, Goble C, Crusoe MR, Soiland-Reyes S, Bell A, et al. (December 2018). "Enabling precision medicine via standard communication of HTS provenance, analysis, and results". PLOS Biology. 16 (12) e3000099. doi:10.1371/journal.pbio.3000099. PMC 6338479. PMID 30596645.
Campbell AM (1 June 2003). "Public Access for Teaching Genomics, Proteomics, and Bioinformatics". Cell Biology Education. 2 (2): 98–111. doi:10.1187/cbe.03-02-0007. PMC 162192. PMID 12888845.
Arenas M (September 2021). "General considerations for online teaching practices in bioinformatics in the time of COVID -19". Biochemistry and Molecular Biology Education. 49 (5): 683–684. doi:10.1002/bmb.21558. ISSN 1470-8175. PMC 8426940. PMID 34231941.
Barker D, Ferrier DE, Holland PW, Mitchell JB, Plaisier H, Ritchie MG, et al. (August 2013). "4273π: bioinformatics education on low cost ARM hardware". BMC Bioinformatics. 13 243: 522. doi:10.1186/1471-2105-14-243. PMC 3751261. PMID 23937194.
Barker D, Alderson RG, McDonagh JL, Plaisier H, Comrie MM, Duncan L, et al. (2015). "University-level practical activities in bioinformatics benefit voluntary groups of pupils in the last 2 years of school". International Journal of STEM Education. 2 (17) 17. doi:10.1186/s40594-015-0030-z. hdl:10023/7704. S2CID 256396656.
McDonagh JL, Barker D, Alderson RG (2016). "Bringing computational science to the public". SpringerPlus. 5 (259) 259. doi:10.1186/s40064-016-1856-7. PMC 4775721. PMID 27006868.
Robson JF, Barker D (October 2015). "Comparison of the protein-coding gene content of Chlamydia trachomatis and Protochlamydia amoebophila using a Raspberry Pi computer". BMC Research Notes. 8 (561) 561. doi:10.1186/s13104-015-1476-2. PMC 4604092. PMID 26462790.
Wreggelsworth KM, Barker D (October 2015). "A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1". BMC Research Notes. 8 (565) 565. doi:10.1186/s13104-015-1535-8. PMC 4606965. PMID 26467441.

ebi.ac.uk (Global: 5,849^th place; English: 7,886^th place)

alphafold.ebi.ac.uk

"AlphaFold Protein Structure Database". alphafold.ebi.ac.uk. Archived from the original on 24 July 2021. Retrieved 10 October 2022.

fda.gov (Global: 447^th place; English: 338^th place)

Office of the Commissioner. "Advancing Regulatory Science – Sept. 24–25, 2014 Public Workshop: Next Generation Sequencing Standards". www.fda.gov. Archived from the original on 14 November 2017. Retrieved 30 November 2017.
Office of the Commissioner. "Advancing Regulatory Science – Community-based development of HTS standards for validating data and computation and encouraging interoperability". www.fda.gov. Archived from the original on 26 January 2018. Retrieved 30 November 2017.

github.com (Global: 383^rd place; English: 320^th place)

BioCompute Object (BCO) project is a collaborative and community-driven framework to standardize HTS computational data. 1. BCO Specification Document: user manual for understanding and creating B., biocompute-objects, 3 September 2017, archived from the original on 27 June 2018, retrieved 30 November 2017

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Barker D, Alderson RG, McDonagh JL, Plaisier H, Comrie MM, Duncan L, et al. (2015). "University-level practical activities in bioinformatics benefit voluntary groups of pupils in the last 2 years of school". International Journal of STEM Education. 2 (17) 17. doi:10.1186/s40594-015-0030-z. hdl:10023/7704. S2CID 256396656.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Hogeweg P (2011). "The Roots of Bioinformatics in Theoretical Biology". PLOS Computational Biology. 7 (3) e1002021. Bibcode:2011PLSCB...7E2021H. doi:10.1371/journal.pcbi.1002021. PMC 3068925. PMID 21483479.
Eck RV, Dayhoff MO (April 1966). "Evolution of the Structure of Ferredoxin Based on Living Relics of Primitive Amino Acid Sequences". Science. 152 (3720): 363–6. Bibcode:1966Sci...152..363E. doi:10.1126/science.152.3720.363. PMID 17775169. S2CID 23208558.
Shulman MJ, Steinberg CM, Westmoreland N (February 1981). "The coding function of nucleotide sequences can be discerned by statistical analysis". Journal of Theoretical Biology. 88 (3): 409–20. Bibcode:1981JThBi..88..409S. doi:10.1016/0022-5193(81)90274-5. PMID 6456380.
Sanger F, Air GM, Barrell BG, Brown NL, Coulson AR, Fiddes CA, et al. (February 1977). "Nucleotide sequence of bacteriophage phi X174 DNA". Nature. 265 (5596): 687–95. Bibcode:1977Natur.265..687S. doi:10.1038/265687a0. PMID 870828. S2CID 4206886.
Fleischmann RD, Adams MD, White O, Clayton RA, Kirkness EF, Kerlavage AR, et al. (July 1995). "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd". Science. 269 (5223): 496–512. Bibcode:1995Sci...269..496F. doi:10.1126/science.7542800. PMID 7542800.
Chaudhari NM, Gupta VK, Dutta C (April 2016). "BPGA- an ultra-fast pan-genome analysis pipeline". Scientific Reports. 6 24373. Bibcode:2016NatSR...624373C. doi:10.1038/srep24373. PMC 4829868. PMID 27071527.
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, et al. (June 2009). "Potential etiologic and functional implications of genome-wide association loci for human diseases and traits". Proceedings of the National Academy of Sciences of the United States of America. 106 (23): 9362–7. Bibcode:2009PNAS..106.9362H. doi:10.1073/pnas.0903103106. PMC 2687147. PMID 19474294.
Manolio TA, Collins FS, Cox NJ, Goldstein DB, Hindorff LA, Hunter DJ, et al. (October 2009). "Finding the missing heritability of complex diseases". Nature. 461 (7265): 747–753. Bibcode:2009Natur.461..747M. doi:10.1038/nature08494. PMC 2831613. PMID 19812666.
Taliun D, Harris DN, Kessler MD, Carlson J, Szpiech ZA, Torres R, et al. (February 2021). "Sequencing of 53,831 diverse genomes from the NHLBI TOPMed Program". Nature. 590 (7845): 290–299. Bibcode:2021Natur.590..290T. doi:10.1038/s41586-021-03205-y. PMC 7875770. PMID 33568819.{{cite journal}}: CS1 maint: overridden setting (link)
Berezovsky IN, Zeldovich KB, Shakhnovich EI (2007). "Positive and Negative Design in Stability and Thermal Adaptation of Natural Proteins". PLOS Computational Biology. 3 (3): e52. arXiv:q-bio/0607003. Bibcode:2007PLSCB...3...52B. doi:10.1371/journal.pcbi.0030052. PMC 1829478. PMID 17381236.
Vazquez M, de la Torre V, Valencia A (27 December 2012). "Chapter 14: Cancer genome analysis". PLOS Computational Biology. 8 (12) e1002824. Bibcode:2012PLSCB...8E2824V. doi:10.1371/journal.pcbi.1002824. PMC 3531315. PMID 23300415.
Jumper J, Evans R, Pritzel A, Green T, Figurnov M, Ronneberger O, et al. (August 2021). "Highly accurate protein structure prediction with AlphaFold". Nature. 596 (7873): 583–589. Bibcode:2021Natur.596..583J. doi:10.1038/s41586-021-03819-2. ISSN 1476-4687. PMC 8371605. PMID 34265844.
Titz B, Rajagopala SV, Goll J, Häuser R, McKevitt MT, Palzkill T, et al. (May 2008). Hall N (ed.). "The binary protein interactome of Treponema pallidum--the syphilis spirochete". PLOS ONE. 3 (5) e2292. Bibcode:2008PLoSO...3.2292T. doi:10.1371/journal.pone.0002292. PMC 2386257. PMID 18509523.

loc.gov (Global: 70^th place; English: 63^rd place)

lccn.loc.gov

Dayhoff MO, Eck RV, Chang MA, Sochard MR (1965). ATLAS of PROTEIN SEQUENCE and STRUCTURE (PDF). Silver Spring, MD, USA: National Biomedical Research Foundation. LCCN 65-29342.

nasa.gov (Global: 75^th place; English: 83^rd place)

ntrs.nasa.gov

Dayhoff MO, Eck RV, Chang MA, Sochard MR (1965). ATLAS of PROTEIN SEQUENCE and STRUCTURE (PDF). Silver Spring, MD, USA: National Biomedical Research Foundation. LCCN 65-29342.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Sim AY, Minary P, Levitt M (June 2012). "Modeling nucleic acids". Current Opinion in Structural Biology. 22 (3): 273–8. doi:10.1016/j.sbi.2012.03.012. PMC 4028509. PMID 22538125.
Dawson WK, Maciejczyk M, Jankowska EJ, Bujnicki JM (July 2016). "Coarse-grained modeling of RNA 3D structure". Methods. 103: 138–56. doi:10.1016/j.ymeth.2016.04.026. PMID 27125734.
Kmiecik S, Gront D, Kolinski M, Wieteska L, Dawid AE, Kolinski A (July 2016). "Coarse-Grained Protein Models and Their Applications". Chemical Reviews. 116 (14): 7898–936. doi:10.1021/acs.chemrev.6b00163. PMID 27333362.
Joyce AP, Zhang C, Bradley P, Havranek JJ (January 2015). "Structure-based modeling of protein: DNA specificity". Briefings in Functional Genomics. 14 (1): 39–49. doi:10.1093/bfgp/elu044. PMC 4366589. PMID 25414269.
Spiga E, Degiacomi MT, Dal Peraro M (2014). "New Strategies for Integrative Dynamic Modeling of Macromolecular Assembly". In Karabencheva-Christova T (ed.). Biomolecular Modelling and Simulations. Advances in Protein Chemistry and Structural Biology. Vol. 96. Academic Press. pp. 77–111. doi:10.1016/bs.apcsb.2014.06.008. ISBN 978-0-12-800013-7. PMID 25443955.
Ciemny M, Kurcinski M, Kamel K, Kolinski A, Alam N, Schueler-Furman O, et al. (August 2018). "Protein-peptide docking: opportunities and challenges". Drug Discovery Today. 23 (8): 1530–1537. doi:10.1016/j.drudis.2018.05.006. PMID 29733895.
Ouzounis CA, Valencia A (2003). "Early bioinformatics: the birth of a discipline—a personal view". Bioinformatics. 19 (17): 2176–2190. doi:10.1093/bioinformatics/btg309. PMID 14630646.
Hogeweg P (2011). "The Roots of Bioinformatics in Theoretical Biology". PLOS Computational Biology. 7 (3) e1002021. Bibcode:2011PLSCB...7E2021H. doi:10.1371/journal.pcbi.1002021. PMC 3068925. PMID 21483479.
Sanger F, Tuppy H (1951). "The Amino-acid Sequence in the Phenylalanyl Chain of Insulin. I. The identification of lower peptides from partial hydrolysates". Biochemical Journal. 49 (4): 463–81. doi:10.1042/bj0490463. PMC 1197535. PMID 14886310.
Sanger F, Thompson EO (1953). "The Amino-acid Sequence in the Glycyl Chain of Insulin. I. The identification of lower peptides from partial hydrolysates". Biochemical Journal. 53 (3): 353–66. doi:10.1042/bj0530353. PMC 1198157. PMID 13032078.
Eck RV, Dayhoff MO (April 1966). "Evolution of the Structure of Ferredoxin Based on Living Relics of Primitive Amino Acid Sequences". Science. 152 (3720): 363–6. Bibcode:1966Sci...152..363E. doi:10.1126/science.152.3720.363. PMID 17775169. S2CID 23208558.
Johnson G, Wu TT (January 2000). "Kabat database and its applications: 30 years after the first variability plot". Nucleic Acids Research. 28 (1): 214–8. doi:10.1093/nar/28.1.214. PMC 102431. PMID 10592229.
Shulman MJ, Steinberg CM, Westmoreland N (February 1981). "The coding function of nucleotide sequences can be discerned by statistical analysis". Journal of Theoretical Biology. 88 (3): 409–20. Bibcode:1981JThBi..88..409S. doi:10.1016/0022-5193(81)90274-5. PMID 6456380.
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Arenas M (September 2021). "General considerations for online teaching practices in bioinformatics in the time of COVID -19". Biochemistry and Molecular Biology Education. 49 (5): 683–684. doi:10.1002/bmb.21558. ISSN 1470-8175. PMC 8426940. PMID 34231941.

Bioinformatics (English Wikipedia)

archive.org (Global: 6th place; English: 6th place)

arxiv.org (Global: 69th place; English: 59th place)

books.google.com (Global: 3rd place; English: 3rd place)

britannica.com (Global: 40th place; English: 58th place)

doi.org (Global: 2nd place; English: 2nd place)

ebi.ac.uk (Global: 5,849th place; English: 7,886th place)

alphafold.ebi.ac.uk

fda.gov (Global: 447th place; English: 338th place)

github.com (Global: 383rd place; English: 320th place)

handle.net (Global: 102nd place; English: 76th place)

hdl.handle.net

harvard.edu (Global: 18th place; English: 17th place)

ui.adsabs.harvard.edu

loc.gov (Global: 70th place; English: 63rd place)

lccn.loc.gov

nasa.gov (Global: 75th place; English: 83rd place)

ntrs.nasa.gov

nih.gov (Global: 4th place; English: 4th place)

pubmed.ncbi.nlm.nih.gov

ncbi.nlm.nih.gov

open-bio.org (Global: low place; English: low place)

predictioncenter.org (Global: low place; English: low place)

proteinatlas.org (Global: low place; English: low place)

semanticscholar.org (Global: 11th place; English: 8th place)

api.semanticscholar.org

sequencing.com (Global: low place; English: low place)

web.archive.org (Global: 1st place; English: 1st place)

worktribe.com (Global: low place; English: low place)

durham-repository.worktribe.com

worldcat.org (Global: 5th place; English: 5th place)

search.worldcat.org

archive.org (Global: 6^th place; English: 6^th place)

arxiv.org (Global: 69^th place; English: 59^th place)

books.google.com (Global: 3^rd place; English: 3^rd place)

britannica.com (Global: 40^th place; English: 58^th place)

doi.org (Global: 2^nd place; English: 2^nd place)

ebi.ac.uk (Global: 5,849^th place; English: 7,886^th place)

fda.gov (Global: 447^th place; English: 338^th place)

github.com (Global: 383^rd place; English: 320^th place)

handle.net (Global: 102^nd place; English: 76^th place)

harvard.edu (Global: 18^th place; English: 17^th place)

loc.gov (Global: 70^th place; English: 63^rd place)

nasa.gov (Global: 75^th place; English: 83^rd place)

nih.gov (Global: 4^th place; English: 4^th place)

semanticscholar.org (Global: 11^th place; English: 8^th place)

web.archive.org (Global: 1^st place; English: 1^st place)

worldcat.org (Global: 5^th place; English: 5^th place)