Biological network (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Biological network" in English language version.

refsWebsite

Global rank English rank

71nih.gov

4^th place

58doi.org

2^nd place

3arxiv.org

69^th place

59^th place

3harvard.edu

18^th place

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2handle.net

102^nd place

76^th place

1worldcat.org

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1jstor.org

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1britannica.com

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1isogg.org

low place

1ams.org

451^st place

277^th place

ams.org

Porter, Mason; Onnela, Jukka-Pekka; Mucha, Peter (2009). "Communities in Networks" (PDF). Notices of the AMS. 56 (9): 1082–1166.

arxiv.org

Mashaghi, A. R.; Ramezanpour, A.; Karimipour, V. (September 2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. doi:10.1140/epjb/e2004-00301-0.
Jeong, H.; Mason, S. P.; Barabási, A.-L.; Oltvai, Z. N. (May 2001). "Lethality and centrality in protein networks". Nature. 411 (6833): 41–42. arXiv:cond-mat/0105306. doi:10.1038/35075138. PMID 11333967.
Lusseau, David (May 2007). "Evidence for social role in a dolphin social network". Evolutionary Ecology. 21 (3): 357–366. arXiv:q-bio/0607048. doi:10.1007/s10682-006-9105-0.

britannica.com

Haug, Mark Gerard. measure of association. Encyclopedia Britannica.

doi.org

Koutrouli, Mikaela; Karatzas, Evangelos; Paez-Espino, David; Pavlopoulos, Georgios A. (2020). "A Guide to Conquer the Biological Network Era Using Graph Theory". Frontiers in Bioengineering and Biotechnology. 8: 34. doi:10.3389/fbioe.2020.00034. PMC 7004966. PMID 32083072.
Emmert-Streib, Frank; Dehmer, Matthias (2015). "Biological networks: the microscope of the twenty-first century?". Frontiers in Genetics. 6: 307. doi:10.3389/fgene.2015.00307. PMC 4602153. PMID 26528327.
Emmert-Streib, Frank; Dehmer, Matthias (13 October 2015). "Biological networks: the microscope of the twenty-first century?". Frontiers in Genetics. 6: 307. doi:10.3389/fgene.2015.00307. PMC 4602153. PMID 26528327.
Emmert-Streib, Frank; Dehmer, Matthias; Haibe-Kains, Benjamin (19 August 2014). "Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks". Frontiers in Cell and Developmental Biology. 2: 38. doi:10.3389/fcell.2014.00038. PMC 4207011. PMID 25364745.
Habibi, Iman; Emamian, Effat S.; Abdi, Ali (2014-01-01). "Quantitative analysis of intracellular communication and signaling errors in signaling networks". BMC Systems Biology. 8: 89. doi:10.1186/s12918-014-0089-z. PMC 4255782. PMID 25115405.
Mashaghi, A. R.; Ramezanpour, A.; Karimipour, V. (September 2004). "Investigation of a protein complex network". The European Physical Journal B. 41 (1): 113–121. arXiv:cond-mat/0304207. doi:10.1140/epjb/e2004-00301-0.
Smits, Arne H.; Vermeulen, Michiel (October 2016). "Characterizing Protein–Protein Interactions Using Mass Spectrometry: Challenges and Opportunities". Trends in Biotechnology. 34 (10): 825–834. doi:10.1016/j.tibtech.2016.02.014. hdl:2066/161800. PMID 26996615.
Zanzoni, A; Montecchi-Palazzi, L; Quondam, M; Ausiello, G; Helmer-Citterich, M; Cesareni, G (Feb 20, 2002). "MINT: a Molecular INTeraction database". FEBS Letters. 513 (1): 135–40. doi:10.1016/s0014-5793(01)03293-8. PMC 1751541. PMID 11911893.
Kerrien, S.; Aranda, B.; Breuza, L.; Bridge, A.; Broackes-Carter, F.; Chen, C.; Duesbury, M.; Dumousseau, M.; Feuermann, M.; Hinz, U.; Jandrasits, C.; Jimenez, R. C.; Khadake, J.; Mahadevan, U.; Masson, P.; Pedruzzi, I.; Pfeiffenberger, E.; Porras, P.; Raghunath, A.; Roechert, B.; Orchard, S.; Hermjakob, H. (24 November 2011). "The IntAct molecular interaction database in 2012". Nucleic Acids Research. 40 (D1): D841 – D846. doi:10.1093/nar/gkr1088. PMC 3245075. PMID 22121220.
Oughtred, Rose; Rust, Jennifer; Chang, Christie; Breitkreutz, Bobby-Joe; Stark, Chris; Willems, Andrew; Boucher, Lorrie; Leung, Genie; Kolas, Nadine; Zhang, Frederick; Dolma, Sonam; Coulombe-Huntington, Jasmin; Chatr-aryamontri, Andrew; Dolinski, Kara; Tyers, Mike (2020). "TheBioGRIDdatabase: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions". Protein Science. 30 (1): 187–200. doi:10.1002/pro.3978. PMC 7737760. PMID 33070389.
Jansen, Ronald; Yu, Haiyuan; Greenbaum, Dov; Kluger, Yuval; Krogan, Nevan J.; Chung, Sambath; Emili, Andrew; Snyder, Michael; Greenblatt, Jack F.; Gerstein, Mark (17 October 2003). "A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data". Science. 302 (5644): 449–453. Bibcode:2003Sci...302..449J. doi:10.1126/science.1087361. PMID 14564010.
Sharan, Roded; Suthram, Silpa; Kelley, Ryan M.; Kuhn, Tanja; McCuine, Scott; Uetz, Peter; Sittler, Taylor; Karp, Richard M.; Ideker, Trey (8 February 2005). "Conserved patterns of protein interaction in multiple species". Proceedings of the National Academy of Sciences. 102 (6): 1974–1979. doi:10.1073/pnas.0409522102. PMC 548573. PMID 15687504.
Jeong, H.; Mason, S. P.; Barabási, A.-L.; Oltvai, Z. N. (May 2001). "Lethality and centrality in protein networks". Nature. 411 (6833): 41–42. arXiv:cond-mat/0105306. doi:10.1038/35075138. PMID 11333967.
Vaquerizas, Juan M.; Kummerfeld, Sarah K.; Teichmann, Sarah A.; Luscombe, Nicholas M. (April 2009). "A census of human transcription factors: function, expression and evolution". Nature Reviews Genetics. 10 (4): 252–263. doi:10.1038/nrg2538. PMID 19274049.
Jia, Bochao; Xu, Suwa; Xiao, Guanghua; Lamba, Vishal; Liang, Faming (2017). "Learning gene regulatory networks from next generation sequencing data". Biometrics. 73 (4): 1221–30. doi:10.1111/biom.12682. PMC 6258556. PMID 28294287.
Angelini, Claudia; Costa, Valerio (2014). "Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems". Frontiers in Cell and Developmental Biology. 2: 51. doi:10.3389/fcell.2014.00051. PMC 4207007. PMID 25364758.
Zheng, Peng-Fei; Chen, Lu-Zhu; Guan, Yao-Zong; Liu, Peng (2021). "Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease". Scientific Reports. 11 (1): 6711. Bibcode:2021NatSR..11.6711Z. doi:10.1038/s41598-021-86207-0. PMC 7988178. PMID 33758323.
Proulx, S; Promislow, D; Phillips, P (June 2005). "Network thinking in ecology and evolution". Trends in Ecology & Evolution. 20 (6): 345–353. doi:10.1016/j.tree.2005.04.004. PMID 16701391.
Cargnello, M.; Roux, P. P. (2011). "Activation and Function of the MAPKs and Their Substrates, the MAPK-Activated Protein Kinases". Microbiology and Molecular Biology Reviews. 75 (1): 50–83. doi:10.1128/MMBR.00031-10. PMC 3063353. PMID 21372320.
Sevimoglu, Tuba; Arga, Kazim Yalcin (2014). "The role of protein interaction networks in systems biomedicine". Computational and Structural Biotechnology Journal. 11 (18): 22–27. doi:10.1016/j.csbj.2014.08.008. PMC 4212283. PMID 25379140.
Arga, K Yalçın; Önsan, Z İlsen; Kırdar, Betül; Ülgen, Kutlu Ö; Nielsen, Jens (August 2007). "Understanding signaling in yeast: Insights from network analysis". Biotechnology and Bioengineering. 97 (5): 1246–1258. doi:10.1002/bit.21317. PMID 17252576.
Browaeys, Robin; Saelens, Wouter; Saeys, Yvan (February 2020). "NicheNet: modeling intercellular communication by linking ligands to target genes". Nature Methods. 17 (2): 159–162. doi:10.1038/s41592-019-0667-5. PMID 31819264.
Bullmore, Ed; Sporns, Olaf (March 2009). "Complex brain networks: graph theoretical analysis of structural and functional systems". Nature Reviews Neuroscience. 10 (3): 186–198. doi:10.1038/nrn2575. PMID 19190637.
Stephan, Klaas E.; Hilgetag, Claus–C.; Burns, Gully A. P. C.; O'Neill, Marc A.; Young, Malcolm P.; Kotter, Rolf (29 January 2000). "Computational analysis of functional connectivity between areas of primate cerebral cortex". Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences. 355 (1393): 111–126. doi:10.1098/rstb.2000.0552. PMC 1692715. PMID 10703047.
Jestrović, Iva; Coyle, James L.; Perera, Subashan; Sejdić, Ervin (December 2016). "Functional connectivity patterns of normal human swallowing: difference among various viscosity swallows in normal and chin-tuck head positions". Brain Research. 1652: 158–169. doi:10.1016/j.brainres.2016.09.041. PMC 5102805. PMID 27693396.
MacArthur, R.H. (1955). "Fluctuations in animal populations and a measure of community stability". Ecology. 36 (3): 533–6. Bibcode:1955Ecol...36..533M. doi:10.2307/1929601. JSTOR 1929601.
Dunne, Jennifer A.; Williams, Richard J.; Martinez, Neo D. (July 2002). "Network structure and biodiversity loss in food webs: robustness increases with connectance". Ecology Letters. 5 (4): 558–567. doi:10.1046/j.1461-0248.2002.00354.x.
Bascompte, Jordi (24 July 2009). "Disentangling the Web of Life". Science. 325 (5939): 416–419. doi:10.1126/science.1170749. PMID 19628856.
Krause, Jens; Lusseau, David; James, Richard (May 2009). "Animal social networks: an introduction". Behavioral Ecology and Sociobiology. 63 (7): 967–973. doi:10.1007/s00265-009-0747-0.
Memmott, Jane; Waser, Nickolas M.; Price, Mary V. (22 December 2004). "Tolerance of pollination networks to species extinctions". Proceedings of the Royal Society of London. Series B: Biological Sciences. 271 (1557): 2605–2611. doi:10.1098/rspb.2004.2909. PMC 1691904. PMID 15615687.
Olesen, Jens M.; Bascompte, Jordi; Dupont, Yoko L.; Jordano, Pedro (11 December 2007). "The modularity of pollination networks". Proceedings of the National Academy of Sciences. 104 (50): 19891–19896. doi:10.1073/pnas.0706375104. PMC 2148393. PMID 18056808.
Campbell, Veronik; Murphy, Grace; Romanuk, Tamara N. (March 2011). "Experimental design and the outcome and interpretation of diversity–stability relations". Oikos. 120 (3): 399–408. doi:10.1111/j.1600-0706.2010.18768.x.
Lotze, Heike K.; Coll, Marta; Dunne, Jennifer A. (March 2011). "Historical Changes in Marine Resources, Food-web Structure and Ecosystem Functioning in the Adriatic Sea, Mediterranean". Ecosystems. 14 (2): 198–222. doi:10.1007/s10021-010-9404-8.
Romanuk, Tamara N.; Vogt, Richard J.; Young, Angela; Tuck, Constance; Carscallen, Mather W. (27 April 2010). "Maintenance of Positive Diversity-Stability Relations along a Gradient of Environmental Stress". PLOS ONE. 5 (4): e10378. doi:10.1371/journal.pone.0010378. PMC 2860506. PMID 20436913.
Croft, Darren P.; Krause, Jens; James, Richard (7 December 2004). "Social networks in the guppy ( Poecilia reticulata )". Proceedings of the Royal Society of London. Series B: Biological Sciences. 271 (suppl_6): S516-9. doi:10.1098/rsbl.2004.0206. PMC 1810091. PMID 15801620.
Krause, Jens; Lusseau, David; James, Richard (May 2009). "Animal social networks: an introduction". Behavioral Ecology and Sociobiology. 63 (7): 967–973. doi:10.1007/s00265-009-0747-0.
Dornhaus, Anna; Klügl, Franziska; Oechslein, Christoph; Puppe, Frank; Chittka, Lars (1 May 2006). "Benefits of recruitment in honey bees: effects of ecology and colony size in an individual-based model". Behavioral Ecology. 17 (3): 336–344. doi:10.1093/beheco/arj036.
Linksvayer, Timothy A.; Fewell, Jennifer H.; Gadau, JüRgen; Laubichler, Manfred D. (May 2012). "Developmental Evolution in Social Insects: Regulatory Networks from Genes to Societies". Journal of Experimental Zoology Part B: Molecular and Developmental Evolution. 318 (3): 159–169. doi:10.1002/jez.b.22001. PMID 22544713.
Mullen, R.J.; Monekosso, D.; Barman, S.; Remagnino, P. (August 2009). "A review of ant algorithms". Expert Systems with Applications. 36 (6): 9608–9617. doi:10.1016/j.eswa.2009.01.020.
Croft, Darren P; Darden, Safi K; Wey, Tina W (December 2016). "Current directions in animal social networks". Current Opinion in Behavioral Sciences. 12: 52–58. doi:10.1016/j.cobeha.2016.09.001. hdl:10871/23348.
Ryder, Thomas B; McDonald, David B; Blake, John G; Parker, Patricia G; Loiselle, Bette A (22 June 2008). "Social networks in the lek-mating wire-tailed manakin (Pipra filicauda)". Proceedings of the Royal Society B: Biological Sciences. 275 (1641): 1367–1374. doi:10.1098/rspb.2008.0205. PMC 2602714. PMID 18381257.
Lusseau, David (May 2007). "Evidence for social role in a dolphin social network". Evolutionary Ecology. 21 (3): 357–366. arXiv:q-bio/0607048. doi:10.1007/s10682-006-9105-0.
Sundaresan, Siva R.; Fischhoff, Ilya R.; Dushoff, Jonathan; Rubenstein, Daniel I. (5 January 2007). "Network metrics reveal differences in social organization between two fission–fusion species, Grevy's zebra and onager". Oecologia. 151 (1): 140–149. doi:10.1007/s00442-006-0553-6. PMID 16964497.
Kasper, Claudia; Voelkl, Bernhard (October 2009). "A social network analysis of primate groups". Primates. 50 (4): 343–356. doi:10.1007/s10329-009-0153-2. PMID 19533270.
Henzi, S. P.; Lusseau, D.; Weingrill, T.; van Schaik, C. P.; Barrett, L. (May 2009). "Cyclicity in the structure of female baboon social networks". Behavioral Ecology and Sociobiology. 63 (7): 1015–1021. doi:10.1007/s00265-009-0720-y.
Hunt, Edmund R.; Mi, Brian; Fernandez, Camila; Wong, Brandyn M.; Pruitt, Jonathan N.; Pinter-Wollman, Noa (12 September 2018). "Social interactions shape individual and collective personality in social spiders". Proceedings of the Royal Society B: Biological Sciences. 285 (1886): 20181366. doi:10.1098/rspb.2018.1366. PMC 6158534. PMID 30185649.
Krause, Jens; Krause, Stefan; Arlinghaus, Robert; Psorakis, Ioannis; Roberts, Stephen; Rutz, Christian (September 2013). "Reality mining of animal social systems". Trends in Ecology & Evolution. 28 (9): 541–551. doi:10.1016/j.tree.2013.06.002. PMID 23856617.
Zhang, Bin; Horvath, Steve (12 January 2005). "A General Framework for Weighted Gene Co-Expression Network Analysis". Statistical Applications in Genetics and Molecular Biology. 4 (1): Article17. doi:10.2202/1544-6115.1128. PMID 16646834.
Beagrie RA, Scialdone A, Schueler M, Kraemer DC, Chotalia M, Xie SQ, Barbieri M, de Santiago I, Lavitas LM, Branco MR, Fraser J, Dostie J, Game L, Dillon N, Edwards PA, Nicodemi M, Pombo A (March 2017). "Complex multi-enhancer contacts captured by genome architecture mapping". Nature. 543 (7646): 519–524. doi:10.1038/nature21411. PMC 5366070. PMID 28273065.
Peng, Sancheng; Zhou, Yongmei; Cao, Lihong; Yu, Shui; Niu, Jianwei; Jia, Weijia (March 2018). "Influence analysis in social networks: A survey". Journal of Network and Computer Applications. 106: 17–32. doi:10.1016/j.jnca.2018.01.005.
Joy MP, Brock A, Ingber DE, Huang S (June 2005). "High-betweenness proteins in the yeast protein interaction network". J Biomed Biotechnol. 2005 (2): 96–103. doi:10.1155/JBB.2005.96. PMC 1184047. PMID 16046814.
Javed, Muhammad Aqib; Younis, Muhammad Shahzad; Latif, Siddique; Qadir, Junaid; Baig, Adeel (April 2018). "Community detection in networks: A multidisciplinary review". Journal of Network and Computer Applications. 108: 87–111. doi:10.1016/j.jnca.2018.02.011.
Girvan M, Newman ME (June 2002). "Community structure in social and biological networks". Proc Natl Acad Sci U S A. 99 (12): 7821–6. doi:10.1073/pnas.122653799. PMC 122977. PMID 12060727.
Markovitch O, Krasnogor N (2018). "Predicting species emergence in simulated complex pre-biotic networks". PLOS ONE. 13 (2): e0192871. doi:10.1371/journal.pone.0192871. PMC 5813963. PMID 29447212.
Traag VA, Waltman L, van Eck NJ (March 2019). "From Louvain to Leiden: guaranteeing well-connected communities". Sci Rep. 9 (1): 5233. doi:10.1038/s41598-019-41695-z. PMC 6435756. PMID 30914743.
Ozaki, Naoto; Tezuka, Hiroshi; Inaba, Mary (2016). "A Simple Acceleration Method for the Louvain Algorithm". International Journal of Computer and Electrical Engineering. 8 (3): 207–218. doi:10.17706/IJCEE.2016.8.3.207-218.
Mittal D, Narayanan R (July 2024). "Network motifs in cellular neurophysiology". Trends Neurosci. 47 (7): 506–521. doi:10.1016/j.tins.2024.04.008. PMID 38806296.
Wei Y, Liao X, Yan C, He Y, Xia M (May 2017). "Identifying topological motif patterns of human brain functional networks". Hum Brain Mapp. 38 (5): 2734–50. doi:10.1002/hbm.23557. PMC 6866742. PMID 28256774.

handle.net

hdl.handle.net

Smits, Arne H.; Vermeulen, Michiel (October 2016). "Characterizing Protein–Protein Interactions Using Mass Spectrometry: Challenges and Opportunities". Trends in Biotechnology. 34 (10): 825–834. doi:10.1016/j.tibtech.2016.02.014. hdl:2066/161800. PMID 26996615.
Croft, Darren P; Darden, Safi K; Wey, Tina W (December 2016). "Current directions in animal social networks". Current Opinion in Behavioral Sciences. 12: 52–58. doi:10.1016/j.cobeha.2016.09.001. hdl:10871/23348.

harvard.edu

ui.adsabs.harvard.edu

Jansen, Ronald; Yu, Haiyuan; Greenbaum, Dov; Kluger, Yuval; Krogan, Nevan J.; Chung, Sambath; Emili, Andrew; Snyder, Michael; Greenblatt, Jack F.; Gerstein, Mark (17 October 2003). "A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data". Science. 302 (5644): 449–453. Bibcode:2003Sci...302..449J. doi:10.1126/science.1087361. PMID 14564010.
Zheng, Peng-Fei; Chen, Lu-Zhu; Guan, Yao-Zong; Liu, Peng (2021). "Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease". Scientific Reports. 11 (1): 6711. Bibcode:2021NatSR..11.6711Z. doi:10.1038/s41598-021-86207-0. PMC 7988178. PMID 33758323.
MacArthur, R.H. (1955). "Fluctuations in animal populations and a measure of community stability". Ecology. 36 (3): 533–6. Bibcode:1955Ecol...36..533M. doi:10.2307/1929601. JSTOR 1929601.

isogg.org

"Linkage Disequilibrium". ISOGG Wiki. International Society of Genetic Genealogy.

jstor.org

MacArthur, R.H. (1955). "Fluctuations in animal populations and a measure of community stability". Ecology. 36 (3): 533–6. Bibcode:1955Ecol...36..533M. doi:10.2307/1929601. JSTOR 1929601.

nih.gov

pubmed.ncbi.nlm.nih.gov

Koutrouli, Mikaela; Karatzas, Evangelos; Paez-Espino, David; Pavlopoulos, Georgios A. (2020). "A Guide to Conquer the Biological Network Era Using Graph Theory". Frontiers in Bioengineering and Biotechnology. 8: 34. doi:10.3389/fbioe.2020.00034. PMC 7004966. PMID 32083072.
Emmert-Streib, Frank; Dehmer, Matthias (2015). "Biological networks: the microscope of the twenty-first century?". Frontiers in Genetics. 6: 307. doi:10.3389/fgene.2015.00307. PMC 4602153. PMID 26528327.
Emmert-Streib, Frank; Dehmer, Matthias (13 October 2015). "Biological networks: the microscope of the twenty-first century?". Frontiers in Genetics. 6: 307. doi:10.3389/fgene.2015.00307. PMC 4602153. PMID 26528327.
Emmert-Streib, Frank; Dehmer, Matthias; Haibe-Kains, Benjamin (19 August 2014). "Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks". Frontiers in Cell and Developmental Biology. 2: 38. doi:10.3389/fcell.2014.00038. PMC 4207011. PMID 25364745.
Habibi, Iman; Emamian, Effat S.; Abdi, Ali (2014-01-01). "Quantitative analysis of intracellular communication and signaling errors in signaling networks". BMC Systems Biology. 8: 89. doi:10.1186/s12918-014-0089-z. PMC 4255782. PMID 25115405.
Smits, Arne H.; Vermeulen, Michiel (October 2016). "Characterizing Protein–Protein Interactions Using Mass Spectrometry: Challenges and Opportunities". Trends in Biotechnology. 34 (10): 825–834. doi:10.1016/j.tibtech.2016.02.014. hdl:2066/161800. PMID 26996615.
Zanzoni, A; Montecchi-Palazzi, L; Quondam, M; Ausiello, G; Helmer-Citterich, M; Cesareni, G (Feb 20, 2002). "MINT: a Molecular INTeraction database". FEBS Letters. 513 (1): 135–40. doi:10.1016/s0014-5793(01)03293-8. PMC 1751541. PMID 11911893.
Kerrien, S.; Aranda, B.; Breuza, L.; Bridge, A.; Broackes-Carter, F.; Chen, C.; Duesbury, M.; Dumousseau, M.; Feuermann, M.; Hinz, U.; Jandrasits, C.; Jimenez, R. C.; Khadake, J.; Mahadevan, U.; Masson, P.; Pedruzzi, I.; Pfeiffenberger, E.; Porras, P.; Raghunath, A.; Roechert, B.; Orchard, S.; Hermjakob, H. (24 November 2011). "The IntAct molecular interaction database in 2012". Nucleic Acids Research. 40 (D1): D841 – D846. doi:10.1093/nar/gkr1088. PMC 3245075. PMID 22121220.
Oughtred, Rose; Rust, Jennifer; Chang, Christie; Breitkreutz, Bobby-Joe; Stark, Chris; Willems, Andrew; Boucher, Lorrie; Leung, Genie; Kolas, Nadine; Zhang, Frederick; Dolma, Sonam; Coulombe-Huntington, Jasmin; Chatr-aryamontri, Andrew; Dolinski, Kara; Tyers, Mike (2020). "TheBioGRIDdatabase: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions". Protein Science. 30 (1): 187–200. doi:10.1002/pro.3978. PMC 7737760. PMID 33070389.
Jansen, Ronald; Yu, Haiyuan; Greenbaum, Dov; Kluger, Yuval; Krogan, Nevan J.; Chung, Sambath; Emili, Andrew; Snyder, Michael; Greenblatt, Jack F.; Gerstein, Mark (17 October 2003). "A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data". Science. 302 (5644): 449–453. Bibcode:2003Sci...302..449J. doi:10.1126/science.1087361. PMID 14564010.
Sharan, Roded; Suthram, Silpa; Kelley, Ryan M.; Kuhn, Tanja; McCuine, Scott; Uetz, Peter; Sittler, Taylor; Karp, Richard M.; Ideker, Trey (8 February 2005). "Conserved patterns of protein interaction in multiple species". Proceedings of the National Academy of Sciences. 102 (6): 1974–1979. doi:10.1073/pnas.0409522102. PMC 548573. PMID 15687504.
Jeong, H.; Mason, S. P.; Barabási, A.-L.; Oltvai, Z. N. (May 2001). "Lethality and centrality in protein networks". Nature. 411 (6833): 41–42. arXiv:cond-mat/0105306. doi:10.1038/35075138. PMID 11333967.
Vaquerizas, Juan M.; Kummerfeld, Sarah K.; Teichmann, Sarah A.; Luscombe, Nicholas M. (April 2009). "A census of human transcription factors: function, expression and evolution". Nature Reviews Genetics. 10 (4): 252–263. doi:10.1038/nrg2538. PMID 19274049.
Jia, Bochao; Xu, Suwa; Xiao, Guanghua; Lamba, Vishal; Liang, Faming (2017). "Learning gene regulatory networks from next generation sequencing data". Biometrics. 73 (4): 1221–30. doi:10.1111/biom.12682. PMC 6258556. PMID 28294287.
Angelini, Claudia; Costa, Valerio (2014). "Understanding gene regulatory mechanisms by integrating ChIP-seq and RNA-seq data: statistical solutions to biological problems". Frontiers in Cell and Developmental Biology. 2: 51. doi:10.3389/fcell.2014.00051. PMC 4207007. PMID 25364758.
Zheng, Peng-Fei; Chen, Lu-Zhu; Guan, Yao-Zong; Liu, Peng (2021). "Weighted gene co-expression network analysis identifies specific modules and hub genes related to coronary artery disease". Scientific Reports. 11 (1): 6711. Bibcode:2021NatSR..11.6711Z. doi:10.1038/s41598-021-86207-0. PMC 7988178. PMID 33758323.
Proulx, S; Promislow, D; Phillips, P (June 2005). "Network thinking in ecology and evolution". Trends in Ecology & Evolution. 20 (6): 345–353. doi:10.1016/j.tree.2005.04.004. PMID 16701391.
Cargnello, M.; Roux, P. P. (2011). "Activation and Function of the MAPKs and Their Substrates, the MAPK-Activated Protein Kinases". Microbiology and Molecular Biology Reviews. 75 (1): 50–83. doi:10.1128/MMBR.00031-10. PMC 3063353. PMID 21372320.
Sevimoglu, Tuba; Arga, Kazim Yalcin (2014). "The role of protein interaction networks in systems biomedicine". Computational and Structural Biotechnology Journal. 11 (18): 22–27. doi:10.1016/j.csbj.2014.08.008. PMC 4212283. PMID 25379140.
Arga, K Yalçın; Önsan, Z İlsen; Kırdar, Betül; Ülgen, Kutlu Ö; Nielsen, Jens (August 2007). "Understanding signaling in yeast: Insights from network analysis". Biotechnology and Bioengineering. 97 (5): 1246–1258. doi:10.1002/bit.21317. PMID 17252576.
Browaeys, Robin; Saelens, Wouter; Saeys, Yvan (February 2020). "NicheNet: modeling intercellular communication by linking ligands to target genes". Nature Methods. 17 (2): 159–162. doi:10.1038/s41592-019-0667-5. PMID 31819264.
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Searls, D.B. (1993). "The computational linguistics of biological sequences". Artificial intelligence and molecular biology. Cambridge, MA: MIT Press. ISBN 978-0-262-58115-8. OCLC 77932373.