Biological network inference (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Biological network inference" in English language version.

refsWebsite

Global rank English rank

47nih.gov

4^th place

35doi.org

2^nd place

9harvard.edu

18^th place

17^th place

8semanticscholar.org

11^th place

8^th place

4arxiv.org

69^th place

59^th place

2worldcat.org

5^th place

1ebi.ac.uk

5,849^th place

7,886^th place

1ams.org

451^st place

277^th place

1bio.tools

low place

ams.org (Global: 451^st place; English: 277^th place)

Carlsson G (2009). "Topology and data". Bulletin of the American Mathematical Society. 46 (2): 255–308. doi:10.1090/S0273-0979-09-01249-X. ISSN 0273-0979.

arxiv.org (Global: 69^th place; English: 59^th place)

Raimondo S, De Domenico M (February 2021). "Measuring topological descriptors of complex networks under uncertainty". Physical Review E. 103 (2–1) 022311. arXiv:2009.06326. Bibcode:2021PhRvE.103b2311R. doi:10.1103/PhysRevE.103.022311. PMID 33735966. S2CID 221655165.
Oates CJ, Mukherjee S (September 2012). "Network Inference and Biological Dynamics". The Annals of Applied Statistics. 6 (3): 1209–1235. arXiv:1112.1047. doi:10.1214/11-AOAS532. PMC 3533376. PMID 23284600.
Cantwell GT, Liu Y, Maier BF, Schwarze AC, Serván CA, Snyder J, St-Onge G (June 2020). "Thresholding normally distributed data creates complex networks". Physical Review E. 101 (6–1) 062302. arXiv:1902.08278. Bibcode:2020PhRvE.101f2302C. doi:10.1103/PhysRevE.101.062302. PMID 32688475. S2CID 67856476.
Taylor D, Klimm F, Harrington HA, Kramár M, Mischaikow K, Porter MA, Mucha PJ (July 2015). "Topological data analysis of contagion maps for examining spreading processes on networks". Nature Communications. 6 (1): 7723. arXiv:1408.1168. Bibcode:2015NatCo...6.7723T. doi:10.1038/ncomms8723. PMC 4566922. PMID 26194875.

bio.tools (Global: low place; English: low place)

"NetBox". bio.tools. Retrieved 2022-05-05.

doi.org (Global: 2^nd place; English: 2^nd place)

Mercatelli D, Scalambra L, Triboli L, Ray F, Giorgi FM (June 2020). "Gene regulatory network inference resources: A practical overview". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1863 (6) 194430. doi:10.1016/j.bbagrm.2019.194430. PMID 31678629. S2CID 207895066.
Barabási AL, Gulbahce N, Loscalzo J (January 2011). "Network medicine: a network-based approach to human disease". Nature Reviews. Genetics. 12 (1): 56–68. doi:10.1038/nrg2918. PMC 3140052. PMID 21164525.
Jailkhani N, Ravichandran S, Hegde SR, Siddiqui Z, Mande SC, Rao KV (December 2011). "Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network". Genome Research. 21 (12): 2067–2081. doi:10.1101/gr.116145.110. PMC 3227097. PMID 21865350.
Jackson MD, Duran-Nebreda S, Bassel GW (October 2017). "Network-based approaches to quantify multicellular development". Journal of the Royal Society, Interface. 14 (135) 20170484. doi:10.1098/rsif.2017.0484. PMC 5665831. PMID 29021161.
van Someren EP, Wessels LF, Backer E, Reinders MJ (July 2002). "Genetic network modeling". Pharmacogenomics. 3 (4): 507–525. doi:10.1517/14622416.3.4.507. PMID 12164774.
Banf M, Rhee SY (January 2017). "Computational inference of gene regulatory networks: Approaches, limitations and opportunities". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1860 (1): 41–52. doi:10.1016/j.bbagrm.2016.09.003. PMID 27641093.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, et al. (July 2012). "Wisdom of crowds for robust gene network inference". Nature Methods. 9 (8): 796–804. doi:10.1038/nmeth.2016. PMC 3512113. PMID 22796662.
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, et al. (January 2007). "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles". PLOS Biology. 5 (1) e8. doi:10.1371/journal.pbio.0050008. PMC 1764438. PMID 17214507.
Raimondo S, De Domenico M (February 2021). "Measuring topological descriptors of complex networks under uncertainty". Physical Review E. 103 (2–1) 022311. arXiv:2009.06326. Bibcode:2021PhRvE.103b2311R. doi:10.1103/PhysRevE.103.022311. PMID 33735966. S2CID 221655165.
Tieri P, Farina L, Petti M, Astolfi L, Paci P, Castiglione F (2018). "Network Inference and Reconstruction in Bioinformatics". Encyclopedia of Bioinformatics and Computational Biology. Vol. 2. pp. 805–813. doi:10.1016/B978-0-12-809633-8.20290-2. ISBN 978-0-12-811432-2. S2CID 65155962.
Oates CJ, Mukherjee S (September 2012). "Network Inference and Biological Dynamics". The Annals of Applied Statistics. 6 (3): 1209–1235. arXiv:1112.1047. doi:10.1214/11-AOAS532. PMC 3533376. PMID 23284600.
Guthke R, Möller U, Hoffmann M, Thies F, Töpfer S (April 2005). "Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection". Bioinformatics. 21 (8): 1626–1634. doi:10.1093/bioinformatics/bti226. PMID 15613398.
Isono E, Schwechheimer C (2010). "Co-immunoprecipitation and Protein Blots". In Hennig L, Köhler C (eds.). Plant Developmental Biology. Methods in Molecular Biology. Vol. 655. Totowa, NJ: Humana Press. pp. 377–387. doi:10.1007/978-1-60761-765-5_25. ISBN 978-1-60761-765-5. PMID 20734274.
Wittig I, Braun HP, Schägger H (June 2006). "Blue native PAGE". Nature Protocols. 1 (1): 418–428. doi:10.1038/nprot.2006.62. PMID 17406264. S2CID 19715017.
Miernyk JA, Thelen JJ (February 2008). "Biochemical approaches for discovering protein-protein interactions". The Plant Journal. 53 (4): 597–609. doi:10.1111/j.1365-313X.2007.03316.x. PMID 18269571.
Bascompte J (July 2009). "Disentangling the web of life". Science. 325 (5939): 416–419. Bibcode:2009Sci...325..416B. doi:10.1126/science.1170749. PMID 19628856. S2CID 2249052.
Croft DP, Krause J, James R (December 2004). "Social networks in the guppy (Poecilia reticulata)". Proceedings. Biological Sciences. 271 (Suppl 6): S516 – S519. doi:10.1098/rsbl.2004.0206. PMC 1810091. PMID 15801620.
Emmert-Streib F, Dehmer M, Haibe-Kains B (2014). "Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks". Frontiers in Cell and Developmental Biology. 2: 38. doi:10.3389/fcell.2014.00038. PMC 4207011. PMID 25364745.
Hsia CW, Ho MY, Shui HA, Tsai CB, Tseng MJ (February 2015). "Analysis of dermal papilla cell interactome using STRING database to profile the ex vivo hair growth inhibition effect of a vinca alkaloid drug, colchicine". International Journal of Molecular Sciences. 16 (2): 3579–3598. doi:10.3390/ijms16023579. PMC 4346914. PMID 25664862.
Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, et al. (2015-01-01). "Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study". Database. 2015 bau131. doi:10.1093/database/bau131. PMC 4316181. PMID 25652942.
Brin S, Page L (1998-04-01). "The anatomy of a large-scale hypertextual Web search engine". Computer Networks and ISDN Systems. Proceedings of the Seventh International World Wide Web Conference. 30 (1): 107–117. doi:10.1016/S0169-7552(98)00110-X. ISSN 0169-7552. S2CID 7587743.
Cantwell GT, Liu Y, Maier BF, Schwarze AC, Serván CA, Snyder J, St-Onge G (June 2020). "Thresholding normally distributed data creates complex networks". Physical Review E. 101 (6–1) 062302. arXiv:1902.08278. Bibcode:2020PhRvE.101f2302C. doi:10.1103/PhysRevE.101.062302. PMID 32688475. S2CID 67856476.
Carlsson G (2009). "Topology and data". Bulletin of the American Mathematical Society. 46 (2): 255–308. doi:10.1090/S0273-0979-09-01249-X. ISSN 0273-0979.
Schmidt S, Post TM, Boroujerdi MA, van Kesteren C, Ploeger BA, Pasqua OE, Danhof M (2011). "Disease Progression Analysis: Towards Mechanism-Based Models". In Kimko HH, Peck CC (eds.). Clinical Trial Simulations: Applications and Trends. AAPS Advances in the Pharmaceutical Sciences Series. Vol. 1. New York, NY: Springer. pp. 433–455. doi:10.1007/978-1-4419-7415-0_19. ISBN 978-1-4419-7415-0.
Nicolau M, Levine AJ, Carlsson G (April 2011). "Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival". Proceedings of the National Academy of Sciences of the United States of America. 108 (17): 7265–7270. Bibcode:2011PNAS..108.7265N. doi:10.1073/pnas.1102826108. PMC 3084136. PMID 21482760.
Chan JM, Carlsson G, Rabadan R (November 2013). "Topology of viral evolution". Proceedings of the National Academy of Sciences of the United States of America. 110 (46): 18566–18571. Bibcode:2013PNAS..11018566C. doi:10.1073/pnas.1313480110. PMC 3831954. PMID 24170857.
Taylor D, Klimm F, Harrington HA, Kramár M, Mischaikow K, Porter MA, Mucha PJ (July 2015). "Topological data analysis of contagion maps for examining spreading processes on networks". Nature Communications. 6 (1): 7723. arXiv:1408.1168. Bibcode:2015NatCo...6.7723T. doi:10.1038/ncomms8723. PMC 4566922. PMID 26194875.
Offroy M, Duponchel L (March 2016). "Topological data analysis: A promising big data exploration tool in biology, analytical chemistry and physical chemistry". Analytica Chimica Acta. 910: 1–11. Bibcode:2016AcAC..910....1O. doi:10.1016/j.aca.2015.12.037. PMID 26873463.
Glass K, Girvan M (February 2014). "Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets". Scientific Reports. 4 (1): 4191. Bibcode:2014NatSR...4E4191G. doi:10.1038/srep04191. PMC 3935204. PMID 24569707.
Wernicke S, Rasche F (May 2006). "FANMOD: a tool for fast network motif detection". Bioinformatics. 22 (9): 1152–1153. doi:10.1093/bioinformatics/btl038. PMID 16455747.
Blais A, Dynlacht BD (July 2005). "Constructing transcriptional regulatory networks". Genes & Development. 19 (13): 1499–1511. doi:10.1101/gad.1325605. PMID 15998805.
Li J, Zhou D, Qiu W, Shi Y, Yang JJ, Chen S, et al. (January 2018). "Application of Weighted Gene Co-expression Network Analysis for Data from Paired Design". Scientific Reports. 8 (1): 622. Bibcode:2018NatSR...8..622L. doi:10.1038/s41598-017-18705-z. PMC 5766625. PMID 29330528.
Liu W, Li L, Ye H, Tu W (November 2017). "[Weighted gene co-expression network analysis in biomedicine research]". Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 33 (11): 1791–1801. doi:10.13345/j.cjb.170006. PMID 29202516.
Ritz A, Poirel CL, Tegge AN, Sharp N, Simmons K, Powell A, et al. (2016-03-03). "Pathways on demand: automated reconstruction of human signaling networks". npj Systems Biology and Applications. 2 (1): 16002. doi:10.1038/npjsba.2016.2. PMC 5516854. PMID 28725467.
Hoffmann R, Krallinger M, Andres E, Tamames J, Blaschke C, Valencia A (May 2005). "Text mining for metabolic pathways, signaling cascades, and protein networks". Science's STKE. 2005 (283) pe21. doi:10.1126/stke.2832005pe21. PMID 15886388. S2CID 15301069.

ebi.ac.uk (Global: 5,849^th place; English: 7,886^th place)

EMBL-EBI. "Centrality analysis | Network analysis of protein interaction data". Retrieved 2022-05-05.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Raimondo S, De Domenico M (February 2021). "Measuring topological descriptors of complex networks under uncertainty". Physical Review E. 103 (2–1) 022311. arXiv:2009.06326. Bibcode:2021PhRvE.103b2311R. doi:10.1103/PhysRevE.103.022311. PMID 33735966. S2CID 221655165.
Bascompte J (July 2009). "Disentangling the web of life". Science. 325 (5939): 416–419. Bibcode:2009Sci...325..416B. doi:10.1126/science.1170749. PMID 19628856. S2CID 2249052.
Cantwell GT, Liu Y, Maier BF, Schwarze AC, Serván CA, Snyder J, St-Onge G (June 2020). "Thresholding normally distributed data creates complex networks". Physical Review E. 101 (6–1) 062302. arXiv:1902.08278. Bibcode:2020PhRvE.101f2302C. doi:10.1103/PhysRevE.101.062302. PMID 32688475. S2CID 67856476.
Nicolau M, Levine AJ, Carlsson G (April 2011). "Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival". Proceedings of the National Academy of Sciences of the United States of America. 108 (17): 7265–7270. Bibcode:2011PNAS..108.7265N. doi:10.1073/pnas.1102826108. PMC 3084136. PMID 21482760.
Chan JM, Carlsson G, Rabadan R (November 2013). "Topology of viral evolution". Proceedings of the National Academy of Sciences of the United States of America. 110 (46): 18566–18571. Bibcode:2013PNAS..11018566C. doi:10.1073/pnas.1313480110. PMC 3831954. PMID 24170857.
Taylor D, Klimm F, Harrington HA, Kramár M, Mischaikow K, Porter MA, Mucha PJ (July 2015). "Topological data analysis of contagion maps for examining spreading processes on networks". Nature Communications. 6 (1): 7723. arXiv:1408.1168. Bibcode:2015NatCo...6.7723T. doi:10.1038/ncomms8723. PMC 4566922. PMID 26194875.
Offroy M, Duponchel L (March 2016). "Topological data analysis: A promising big data exploration tool in biology, analytical chemistry and physical chemistry". Analytica Chimica Acta. 910: 1–11. Bibcode:2016AcAC..910....1O. doi:10.1016/j.aca.2015.12.037. PMID 26873463.
Glass K, Girvan M (February 2014). "Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets". Scientific Reports. 4 (1): 4191. Bibcode:2014NatSR...4E4191G. doi:10.1038/srep04191. PMC 3935204. PMID 24569707.
Li J, Zhou D, Qiu W, Shi Y, Yang JJ, Chen S, et al. (January 2018). "Application of Weighted Gene Co-expression Network Analysis for Data from Paired Design". Scientific Reports. 8 (1): 622. Bibcode:2018NatSR...8..622L. doi:10.1038/s41598-017-18705-z. PMC 5766625. PMID 29330528.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Mercatelli D, Scalambra L, Triboli L, Ray F, Giorgi FM (June 2020). "Gene regulatory network inference resources: A practical overview". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1863 (6) 194430. doi:10.1016/j.bbagrm.2019.194430. PMID 31678629. S2CID 207895066.
Barabási AL, Gulbahce N, Loscalzo J (January 2011). "Network medicine: a network-based approach to human disease". Nature Reviews. Genetics. 12 (1): 56–68. doi:10.1038/nrg2918. PMC 3140052. PMID 21164525.
Jailkhani N, Ravichandran S, Hegde SR, Siddiqui Z, Mande SC, Rao KV (December 2011). "Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network". Genome Research. 21 (12): 2067–2081. doi:10.1101/gr.116145.110. PMC 3227097. PMID 21865350.
Jackson MD, Duran-Nebreda S, Bassel GW (October 2017). "Network-based approaches to quantify multicellular development". Journal of the Royal Society, Interface. 14 (135) 20170484. doi:10.1098/rsif.2017.0484. PMC 5665831. PMID 29021161.
van Someren EP, Wessels LF, Backer E, Reinders MJ (July 2002). "Genetic network modeling". Pharmacogenomics. 3 (4): 507–525. doi:10.1517/14622416.3.4.507. PMID 12164774.
Banf M, Rhee SY (January 2017). "Computational inference of gene regulatory networks: Approaches, limitations and opportunities". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1860 (1): 41–52. doi:10.1016/j.bbagrm.2016.09.003. PMID 27641093.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, et al. (July 2012). "Wisdom of crowds for robust gene network inference". Nature Methods. 9 (8): 796–804. doi:10.1038/nmeth.2016. PMC 3512113. PMID 22796662.
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, et al. (January 2007). "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles". PLOS Biology. 5 (1) e8. doi:10.1371/journal.pbio.0050008. PMC 1764438. PMID 17214507.
Raimondo S, De Domenico M (February 2021). "Measuring topological descriptors of complex networks under uncertainty". Physical Review E. 103 (2–1) 022311. arXiv:2009.06326. Bibcode:2021PhRvE.103b2311R. doi:10.1103/PhysRevE.103.022311. PMID 33735966. S2CID 221655165.
Oates CJ, Mukherjee S (September 2012). "Network Inference and Biological Dynamics". The Annals of Applied Statistics. 6 (3): 1209–1235. arXiv:1112.1047. doi:10.1214/11-AOAS532. PMC 3533376. PMID 23284600.
Guthke R, Möller U, Hoffmann M, Thies F, Töpfer S (April 2005). "Dynamic network reconstruction from gene expression data applied to immune response during bacterial infection". Bioinformatics. 21 (8): 1626–1634. doi:10.1093/bioinformatics/bti226. PMID 15613398.
Isono E, Schwechheimer C (2010). "Co-immunoprecipitation and Protein Blots". In Hennig L, Köhler C (eds.). Plant Developmental Biology. Methods in Molecular Biology. Vol. 655. Totowa, NJ: Humana Press. pp. 377–387. doi:10.1007/978-1-60761-765-5_25. ISBN 978-1-60761-765-5. PMID 20734274.
Wittig I, Braun HP, Schägger H (June 2006). "Blue native PAGE". Nature Protocols. 1 (1): 418–428. doi:10.1038/nprot.2006.62. PMID 17406264. S2CID 19715017.
Miernyk JA, Thelen JJ (February 2008). "Biochemical approaches for discovering protein-protein interactions". The Plant Journal. 53 (4): 597–609. doi:10.1111/j.1365-313X.2007.03316.x. PMID 18269571.
Bascompte J (July 2009). "Disentangling the web of life". Science. 325 (5939): 416–419. Bibcode:2009Sci...325..416B. doi:10.1126/science.1170749. PMID 19628856. S2CID 2249052.
Croft DP, Krause J, James R (December 2004). "Social networks in the guppy (Poecilia reticulata)". Proceedings. Biological Sciences. 271 (Suppl 6): S516 – S519. doi:10.1098/rsbl.2004.0206. PMC 1810091. PMID 15801620.
Emmert-Streib F, Dehmer M, Haibe-Kains B (2014). "Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks". Frontiers in Cell and Developmental Biology. 2: 38. doi:10.3389/fcell.2014.00038. PMC 4207011. PMID 25364745.
Hsia CW, Ho MY, Shui HA, Tsai CB, Tseng MJ (February 2015). "Analysis of dermal papilla cell interactome using STRING database to profile the ex vivo hair growth inhibition effect of a vinca alkaloid drug, colchicine". International Journal of Molecular Sciences. 16 (2): 3579–3598. doi:10.3390/ijms16023579. PMC 4346914. PMID 25664862.
Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, et al. (2015-01-01). "Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study". Database. 2015 bau131. doi:10.1093/database/bau131. PMC 4316181. PMID 25652942.
Cantwell GT, Liu Y, Maier BF, Schwarze AC, Serván CA, Snyder J, St-Onge G (June 2020). "Thresholding normally distributed data creates complex networks". Physical Review E. 101 (6–1) 062302. arXiv:1902.08278. Bibcode:2020PhRvE.101f2302C. doi:10.1103/PhysRevE.101.062302. PMID 32688475. S2CID 67856476.
Nicolau M, Levine AJ, Carlsson G (April 2011). "Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival". Proceedings of the National Academy of Sciences of the United States of America. 108 (17): 7265–7270. Bibcode:2011PNAS..108.7265N. doi:10.1073/pnas.1102826108. PMC 3084136. PMID 21482760.
Chan JM, Carlsson G, Rabadan R (November 2013). "Topology of viral evolution". Proceedings of the National Academy of Sciences of the United States of America. 110 (46): 18566–18571. Bibcode:2013PNAS..11018566C. doi:10.1073/pnas.1313480110. PMC 3831954. PMID 24170857.
Taylor D, Klimm F, Harrington HA, Kramár M, Mischaikow K, Porter MA, Mucha PJ (July 2015). "Topological data analysis of contagion maps for examining spreading processes on networks". Nature Communications. 6 (1): 7723. arXiv:1408.1168. Bibcode:2015NatCo...6.7723T. doi:10.1038/ncomms8723. PMC 4566922. PMID 26194875.
Offroy M, Duponchel L (March 2016). "Topological data analysis: A promising big data exploration tool in biology, analytical chemistry and physical chemistry". Analytica Chimica Acta. 910: 1–11. Bibcode:2016AcAC..910....1O. doi:10.1016/j.aca.2015.12.037. PMID 26873463.
Glass K, Girvan M (February 2014). "Annotation enrichment analysis: an alternative method for evaluating the functional properties of gene sets". Scientific Reports. 4 (1): 4191. Bibcode:2014NatSR...4E4191G. doi:10.1038/srep04191. PMC 3935204. PMID 24569707.
Wernicke S, Rasche F (May 2006). "FANMOD: a tool for fast network motif detection". Bioinformatics. 22 (9): 1152–1153. doi:10.1093/bioinformatics/btl038. PMID 16455747.
Blais A, Dynlacht BD (July 2005). "Constructing transcriptional regulatory networks". Genes & Development. 19 (13): 1499–1511. doi:10.1101/gad.1325605. PMID 15998805.
Li J, Zhou D, Qiu W, Shi Y, Yang JJ, Chen S, et al. (January 2018). "Application of Weighted Gene Co-expression Network Analysis for Data from Paired Design". Scientific Reports. 8 (1): 622. Bibcode:2018NatSR...8..622L. doi:10.1038/s41598-017-18705-z. PMC 5766625. PMID 29330528.
Liu W, Li L, Ye H, Tu W (November 2017). "[Weighted gene co-expression network analysis in biomedicine research]". Sheng Wu Gong Cheng Xue Bao = Chinese Journal of Biotechnology. 33 (11): 1791–1801. doi:10.13345/j.cjb.170006. PMID 29202516.
Ritz A, Poirel CL, Tegge AN, Sharp N, Simmons K, Powell A, et al. (2016-03-03). "Pathways on demand: automated reconstruction of human signaling networks". npj Systems Biology and Applications. 2 (1): 16002. doi:10.1038/npjsba.2016.2. PMC 5516854. PMID 28725467.
Hoffmann R, Krallinger M, Andres E, Tamames J, Blaschke C, Valencia A (May 2005). "Text mining for metabolic pathways, signaling cascades, and protein networks". Science's STKE. 2005 (283) pe21. doi:10.1126/stke.2832005pe21. PMID 15886388. S2CID 15301069.

ncbi.nlm.nih.gov

Barabási AL, Gulbahce N, Loscalzo J (January 2011). "Network medicine: a network-based approach to human disease". Nature Reviews. Genetics. 12 (1): 56–68. doi:10.1038/nrg2918. PMC 3140052. PMID 21164525.
Jailkhani N, Ravichandran S, Hegde SR, Siddiqui Z, Mande SC, Rao KV (December 2011). "Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network". Genome Research. 21 (12): 2067–2081. doi:10.1101/gr.116145.110. PMC 3227097. PMID 21865350.
Jackson MD, Duran-Nebreda S, Bassel GW (October 2017). "Network-based approaches to quantify multicellular development". Journal of the Royal Society, Interface. 14 (135) 20170484. doi:10.1098/rsif.2017.0484. PMC 5665831. PMID 29021161.
Marbach D, Costello JC, Küffner R, Vega NM, Prill RJ, Camacho DM, et al. (July 2012). "Wisdom of crowds for robust gene network inference". Nature Methods. 9 (8): 796–804. doi:10.1038/nmeth.2016. PMC 3512113. PMID 22796662.
Faith JJ, Hayete B, Thaden JT, Mogno I, Wierzbowski J, Cottarel G, et al. (January 2007). "Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles". PLOS Biology. 5 (1) e8. doi:10.1371/journal.pbio.0050008. PMC 1764438. PMID 17214507.
Oates CJ, Mukherjee S (September 2012). "Network Inference and Biological Dynamics". The Annals of Applied Statistics. 6 (3): 1209–1235. arXiv:1112.1047. doi:10.1214/11-AOAS532. PMC 3533376. PMID 23284600.
Croft DP, Krause J, James R (December 2004). "Social networks in the guppy (Poecilia reticulata)". Proceedings. Biological Sciences. 271 (Suppl 6): S516 – S519. doi:10.1098/rsbl.2004.0206. PMC 1810091. PMID 15801620.
Emmert-Streib F, Dehmer M, Haibe-Kains B (2014). "Gene regulatory networks and their applications: understanding biological and medical problems in terms of networks". Frontiers in Cell and Developmental Biology. 2: 38. doi:10.3389/fcell.2014.00038. PMC 4207011. PMID 25364745.
Hsia CW, Ho MY, Shui HA, Tsai CB, Tseng MJ (February 2015). "Analysis of dermal papilla cell interactome using STRING database to profile the ex vivo hair growth inhibition effect of a vinca alkaloid drug, colchicine". International Journal of Molecular Sciences. 16 (2): 3579–3598. doi:10.3390/ijms16023579. PMC 4346914. PMID 25664862.
Villaveces JM, Jiménez RC, Porras P, Del-Toro N, Duesbury M, Dumousseau M, et al. (2015-01-01). "Merging and scoring molecular interactions utilising existing community standards: tools, use-cases and a case study". Database. 2015 bau131. doi:10.1093/database/bau131. PMC 4316181. PMID 25652942.
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worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

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Biological network inference (English Wikipedia)

ams.org (Global: 451st place; English: 277th place)

arxiv.org (Global: 69th place; English: 59th place)