Biopython (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Biopython" in English language version.

refsWebsite

Global rank English rank

11nih.gov

4^th place

9doi.org

2^nd place

7biopython.org

low place

2semanticscholar.org

11^th place

8^th place

1handle.net

102^nd place

76^th place

1worldcat.org

5^th place

1archive.today

14^th place

1open-bio.org

low place

1github.com

383^rd place

320^th place

1harvard.edu

18^th place

17^th place

archive.today (Global: 14^th place; English: 14^th place)

List of Biopython contributors, archived from the original on 11 September 2014, retrieved 11 September 2014

biopython.org (Global: low place; English: low place)

"Introduction — Biopython 1.85 documentation". biopython.org. Retrieved 2025-08-15.
Chapman, Brad (11 March 2004), The Biopython Project: Philosophy, functionality and facts (PDF), retrieved 11 September 2014
List of Biopython contributors, archived from the original on 11 September 2014, retrieved 11 September 2014
"Download · Biopython". biopython.org. Retrieved 2025-08-15.
Refer to the Biopython website for other papers describing Biopython, and a list of over one hundred publications using/citing Biopython.
Chang, Jeff; Chapman, Brad; Friedberg, Iddo; Hamelryck, Thomas; de Hoon, Michiel; Cock, Peter; Antao, Tiago; Talevich, Eric; Wilczynski, Bartek (29 May 2014), Biopython Tutorial and Cookbook, retrieved 28 August 2014
"Bio.Application package — Biopython 1.74 documentation". biopython.org. Retrieved 2025-08-15.

doi.org (Global: 2^nd place; English: 2^nd place)

Chapman, Brad; Chang, Jeff (August 2000). "Biopython: Python tools for computational biology". ACM SIGBIO Newsletter. 20 (2): 15–19. doi:10.1145/360262.360268. S2CID 9417766.
Cock, Peter J. A.; Antao, Tiago; Chang, Jeffrey T.; Chapman, Brad A.; Cox, Cymon J.; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J. L. (2009-03-20). "Biopython: freely available Python tools for computational molecular biology and bioinformatics". Bioinformatics. 25 (11): 1422–1423. doi:10.1093/bioinformatics/btp163. hdl:10400.1/5523. ISSN 1367-4811.
Knight, R; Maxwell, P; Birmingham, A; Carnes, J; Caporaso, J. G.; Easton, B. C.; Eaton, M; Hamady, M; Lindsay, H; Liu, Z; Lozupone, C; McDonald, D; Robeson, M; Sammut, R; Smit, S; Wakefield, M. J.; Widmann, J; Wikman, S; Wilson, S; Ying, H; Huttley, G. A. (2007). "Py Cogent: A toolkit for making sense from sequence". Genome Biology. 8 (8): R171. doi:10.1186/gb-2007-8-8-r171. PMC 2375001. PMID 17708774.
Zmasek, Christian M; Zhang, Qing; Ye, Yuzhen; Godzik, Adam (24 October 2007). "Surprising complexity of the ancestral apoptosis network". Genome Biology. 8 (10): R226. doi:10.1186/gb-2007-8-10-r226. PMC 2246300. PMID 17958905.
Talevich, Eric; Invergo, Brandon M; Cock, Peter JA; Chapman, Brad A (21 August 2012). "Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython". BMC Bioinformatics. 13 (209): 209. doi:10.1186/1471-2105-13-209. PMC 3468381. PMID 22909249.
Pritchard, Leighton; White, Jennifer A; Birch, Paul RJ; Toth, Ian K (March 2006). "GenomeDiagram: a python package for the visualization of large-scale genomic data". Bioinformatics. 22 (5): 616–617. doi:10.1093/bioinformatics/btk021. PMID 16377612.
Hamelryck, Thomas; Manderick, Bernard (10 May 2003). "PDB file parser and structure class implemented in Python". Bioinformatics. 19 (17): 2308–2310. doi:10.1093/bioinformatics/btg299. PMID 14630660.
Rousset, François (January 2008). "GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux". Molecular Ecology Resources. 8 (1): 103–106. Bibcode:2008MolER...8..103R. doi:10.1111/j.1471-8286.2007.01931.x. PMID 21585727. S2CID 25776992.
Excoffier, Laurent; Foll, Matthieu (1 March 2011). "fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios". Bioinformatics. 27 (9): 1332–1334. doi:10.1093/bioinformatics/btr124. PMID 21398675.

github.com (Global: 383^rd place; English: 320^th place)

"Biopython".

handle.net (Global: 102^nd place; English: 76^th place)

hdl.handle.net

Cock, Peter J. A.; Antao, Tiago; Chang, Jeffrey T.; Chapman, Brad A.; Cox, Cymon J.; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J. L. (2009-03-20). "Biopython: freely available Python tools for computational molecular biology and bioinformatics". Bioinformatics. 25 (11): 1422–1423. doi:10.1093/bioinformatics/btp163. hdl:10400.1/5523. ISSN 1367-4811.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Rousset, François (January 2008). "GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux". Molecular Ecology Resources. 8 (1): 103–106. Bibcode:2008MolER...8..103R. doi:10.1111/j.1471-8286.2007.01931.x. PMID 21585727. S2CID 25776992.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Knight, R; Maxwell, P; Birmingham, A; Carnes, J; Caporaso, J. G.; Easton, B. C.; Eaton, M; Hamady, M; Lindsay, H; Liu, Z; Lozupone, C; McDonald, D; Robeson, M; Sammut, R; Smit, S; Wakefield, M. J.; Widmann, J; Wikman, S; Wilson, S; Ying, H; Huttley, G. A. (2007). "Py Cogent: A toolkit for making sense from sequence". Genome Biology. 8 (8): R171. doi:10.1186/gb-2007-8-8-r171. PMC 2375001. PMID 17708774.
Zmasek, Christian M; Zhang, Qing; Ye, Yuzhen; Godzik, Adam (24 October 2007). "Surprising complexity of the ancestral apoptosis network". Genome Biology. 8 (10): R226. doi:10.1186/gb-2007-8-10-r226. PMC 2246300. PMID 17958905.
Talevich, Eric; Invergo, Brandon M; Cock, Peter JA; Chapman, Brad A (21 August 2012). "Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython". BMC Bioinformatics. 13 (209): 209. doi:10.1186/1471-2105-13-209. PMC 3468381. PMID 22909249.
Pritchard, Leighton; White, Jennifer A; Birch, Paul RJ; Toth, Ian K (March 2006). "GenomeDiagram: a python package for the visualization of large-scale genomic data". Bioinformatics. 22 (5): 616–617. doi:10.1093/bioinformatics/btk021. PMID 16377612.
Hamelryck, Thomas; Manderick, Bernard (10 May 2003). "PDB file parser and structure class implemented in Python". Bioinformatics. 19 (17): 2308–2310. doi:10.1093/bioinformatics/btg299. PMID 14630660.
Rousset, François (January 2008). "GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux". Molecular Ecology Resources. 8 (1): 103–106. Bibcode:2008MolER...8..103R. doi:10.1111/j.1471-8286.2007.01931.x. PMID 21585727. S2CID 25776992.
Excoffier, Laurent; Foll, Matthieu (1 March 2011). "fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios". Bioinformatics. 27 (9): 1332–1334. doi:10.1093/bioinformatics/btr124. PMID 21398675.

ncbi.nlm.nih.gov

Knight, R; Maxwell, P; Birmingham, A; Carnes, J; Caporaso, J. G.; Easton, B. C.; Eaton, M; Hamady, M; Lindsay, H; Liu, Z; Lozupone, C; McDonald, D; Robeson, M; Sammut, R; Smit, S; Wakefield, M. J.; Widmann, J; Wikman, S; Wilson, S; Ying, H; Huttley, G. A. (2007). "Py Cogent: A toolkit for making sense from sequence". Genome Biology. 8 (8): R171. doi:10.1186/gb-2007-8-8-r171. PMC 2375001. PMID 17708774.
Zmasek, Christian M; Zhang, Qing; Ye, Yuzhen; Godzik, Adam (24 October 2007). "Surprising complexity of the ancestral apoptosis network". Genome Biology. 8 (10): R226. doi:10.1186/gb-2007-8-10-r226. PMC 2246300. PMID 17958905.
Talevich, Eric; Invergo, Brandon M; Cock, Peter JA; Chapman, Brad A (21 August 2012). "Bio.Phylo: A unified toolkit for processing, analyzing and visualizing phylogenetic trees in Biopython". BMC Bioinformatics. 13 (209): 209. doi:10.1186/1471-2105-13-209. PMC 3468381. PMID 22909249.
"Klebsiella pneumoniae strain KPS77 plasmid pKPS77, complete sequence". NCBI. Retrieved 10 September 2014.

open-bio.org (Global: low place; English: low place)

Daley, Chris, Biopython 1.77 released, retrieved 6 October 2021

semanticscholar.org (Global: 11^th place; English: 8^th place)

api.semanticscholar.org

Chapman, Brad; Chang, Jeff (August 2000). "Biopython: Python tools for computational biology". ACM SIGBIO Newsletter. 20 (2): 15–19. doi:10.1145/360262.360268. S2CID 9417766.
Rousset, François (January 2008). "GENEPOP'007: a complete re-implementation of the GENEPOP software for Windows and Linux". Molecular Ecology Resources. 8 (1): 103–106. Bibcode:2008MolER...8..103R. doi:10.1111/j.1471-8286.2007.01931.x. PMID 21585727. S2CID 25776992.

worldcat.org (Global: 5^th place; English: 5^th place)

search.worldcat.org

Cock, Peter J. A.; Antao, Tiago; Chang, Jeffrey T.; Chapman, Brad A.; Cox, Cymon J.; Dalke, Andrew; Friedberg, Iddo; Hamelryck, Thomas; Kauff, Frank; Wilczynski, Bartek; de Hoon, Michiel J. L. (2009-03-20). "Biopython: freely available Python tools for computational molecular biology and bioinformatics". Bioinformatics. 25 (11): 1422–1423. doi:10.1093/bioinformatics/btp163. hdl:10400.1/5523. ISSN 1367-4811.

Biopython (English Wikipedia)

archive.today (Global: 14th place; English: 14th place)

biopython.org (Global: low place; English: low place)

doi.org (Global: 2nd place; English: 2nd place)

github.com (Global: 383rd place; English: 320th place)

handle.net (Global: 102nd place; English: 76th place)