Boolean network (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Boolean network" in English language version.

refsWebsite

Global rank English rank

28doi.org

2^nd place

22harvard.edu

18^th place

17^th place

21nih.gov

4^th place

16arxiv.org

69^th place

59^th place

16semanticscholar.org

11^th place

8^th place

6worldcat.org

5^th place

5web.archive.org

1^st place

3books.google.com

3^rd place

1psu.edu

207^th place

136^th place

1iop.org

1,725^th place

1,828^th place

1acm.org

1,185^th place

840^th place

acm.org

dl.acm.org

Hajiramezanali, E. & Imani, M. & Braga-Neto, U. & Qian, X. & Dougherty, E.. Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model Uncertainty. ACMBCB'18. https://dl.acm.org/citation.cfm?id=3233689 Archived 2021-03-22 at the Wayback Machine

arxiv.org

Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.
Drossel, Barbara (December 2009). "Random Boolean Networks". In Schuster, Heinz Georg (ed.). Chapter 3. Random Boolean Networks. Reviews of Nonlinear Dynamics and Complexity. Wiley. pp. 69–110. arXiv:0706.3351. doi:10.1002/9783527626359.ch3. ISBN 9783527626359. S2CID 119300231.
Aldana, Maximo; Coppersmith, Susan; Kadanoff, Leo P. (2003). "Boolean Dynamics with Random Couplings". Perspectives and Problems in Nonlinear Science: A Celebratory Volume in Honor of Lawrence Sirovich. pp. 23–89. arXiv:nlin/0204062. doi:10.1007/978-0-387-21789-5_2. ISBN 978-1-4684-9566-9. S2CID 15024306.
Gershenson, Carlos (2004). "Introduction to Random Boolean Networks". In Bedau, M., P. Husbands, T. Hutton, S. Kumar, and H. Suzuki (Eds.) Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALife IX). Pp. 2004: 160–173. arXiv:nlin.AO/0408006. Bibcode:2004nlin......8006G.
Bastolla, U.; Parisi, G. (May 1998). "The modular structure of Kauffman networks". Physica D: Nonlinear Phenomena. 115 (3–4): 219–233. arXiv:cond-mat/9708214. Bibcode:1998PhyD..115..219B. doi:10.1016/S0167-2789(97)00242-X. S2CID 1585753.
Bilke, Sven; Sjunnesson, Fredrik (December 2001). "Stability of the Kauffman model". Physical Review E. 65 (1): 016129. arXiv:cond-mat/0107035. Bibcode:2001PhRvE..65a6129B. doi:10.1103/PhysRevE.65.016129. PMID 11800758. S2CID 2470586.
Socolar, J.; Kauffman, S. (February 2003). "Scaling in Ordered and Critical Random Boolean Networks". Physical Review Letters. 90 (6): 068702. arXiv:cond-mat/0212306. Bibcode:2003PhRvL..90f8702S. doi:10.1103/PhysRevLett.90.068702. PMID 12633339. S2CID 14392074.
Mihaljev, Tamara; Drossel, Barbara (October 2006). "Scaling in a general class of critical random Boolean networks". Physical Review E. 74 (4): 046101. arXiv:cond-mat/0606612. Bibcode:2006PhRvE..74d6101M. doi:10.1103/PhysRevE.74.046101. PMID 17155127. S2CID 17739744.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.
Aldana, Maximino (October 2003). "Boolean dynamics of networks with scale-free topology". Physica D: Nonlinear Phenomena. 185 (1): 45–66. arXiv:cond-mat/0209571. Bibcode:2003PhyD..185...45A. doi:10.1016/s0167-2789(03)00174-x.
Drossel, Barbara; Greil, Florian (4 August 2009). "Critical Boolean networks with scale-free in-degree distribution". Physical Review E. 80 (2): 026102. arXiv:0901.0387. Bibcode:2009PhRvE..80b6102D. doi:10.1103/PhysRevE.80.026102. PMID 19792195. S2CID 2487442.
Gershenson, Carlos (2002). "Classification of Random Boolean Networks". In Standish, Russell K; Bedau, Mark A (eds.). Proceedings of the Eighth International Conference on Artificial Life. Artificial Life. Vol. 8. Cambridge, Massachusetts, USA. pp. 1–8. arXiv:cs/0208001. Bibcode:2002cs........8001G. ISBN 9780262692816. Archived from the original on 4 February 2023. Retrieved 12 January 2016.{{cite book}}: CS1 maint: location missing publisher (link)
Gershenson, Carlos; Broekaert, Jan; Aerts, Diederik (14 September 2003). "Contextual Random Boolean Networks". Advances in Artificial Life [7th European Conference, ECAL 2003]. Lecture Notes in Computer Science. Vol. 2801. Dortmund, Germany. pp. 615–624. arXiv:nlin/0303021. doi:10.1007/978-3-540-39432-7_66. ISBN 978-3-540-39432-7. S2CID 4309400.{{cite book}}: CS1 maint: location missing publisher (link)
Imani, M.; Braga-Neto, U. M. (2017-01-01). "Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems". IEEE Transactions on Signal Processing. 65 (2): 359–371. arXiv:1702.07269. Bibcode:2017ITSP...65..359I. doi:10.1109/TSP.2016.2614798. ISSN 1053-587X. S2CID 178376.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.

books.google.com

Wuensche, Andrew (2011). Exploring discrete dynamics : [the DDLab manual : tools for researching cellular automata, random Boolean and multivalue neworks [sic] and beyond]. Frome, England: Luniver Press. p. 16. ISBN 9781905986316. Archived from the original on 4 February 2023. Retrieved 12 January 2016.
Harvey, Imman; Bossomaier, Terry (1997). "Time out of joint: Attractors in asynchronous random Boolean networks". In Husbands, Phil; Harvey, Imman (eds.). Proceedings of the Fourth European Conference on Artificial Life (ECAL97). MIT Press. pp. 67–75. ISBN 9780262581578. Archived from the original on 2023-02-04. Retrieved 2020-09-16.
Gershenson, Carlos (2002). "Classification of Random Boolean Networks". In Standish, Russell K; Bedau, Mark A (eds.). Proceedings of the Eighth International Conference on Artificial Life. Artificial Life. Vol. 8. Cambridge, Massachusetts, USA. pp. 1–8. arXiv:cs/0208001. Bibcode:2002cs........8001G. ISBN 9780262692816. Archived from the original on 4 February 2023. Retrieved 12 January 2016.{{cite book}}: CS1 maint: location missing publisher (link)

doi.org

Naldi, A.; Monteiro, P. T.; Mussel, C.; Kestler, H. A.; Thieffry, D.; Xenarios, I.; Saez-Rodriguez, J.; Helikar, T.; Chaouiya, C. (25 January 2015). "Cooperative development of logical modelling standards and tools with CoLoMoTo". Bioinformatics. 31 (7): 1154–1159. doi:10.1093/bioinformatics/btv013. PMID 25619997.
Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.
Li, J.; Bench, A. J.; Vassiliou, G. S.; Fourouclas, N.; Ferguson-Smith, A. C.; Green, A. R. (30 April 2004). "Imprinting of the human L3MBTL gene, a polycomb family member located in a region of chromosome 20 deleted in human myeloid malignancies". Proceedings of the National Academy of Sciences. 101 (19): 7341–7346. Bibcode:2004PNAS..101.7341L. doi:10.1073/pnas.0308195101. PMC 409920. PMID 15123827.
Drossel, Barbara (December 2009). "Random Boolean Networks". In Schuster, Heinz Georg (ed.). Chapter 3. Random Boolean Networks. Reviews of Nonlinear Dynamics and Complexity. Wiley. pp. 69–110. arXiv:0706.3351. doi:10.1002/9783527626359.ch3. ISBN 9783527626359. S2CID 119300231.
Kauffman, Stuart (11 October 1969). "Homeostasis and Differentiation in Random Genetic Control Networks". Nature. 224 (5215): 177–178. Bibcode:1969Natur.224..177K. doi:10.1038/224177a0. PMID 5343519. S2CID 4179318.
Aldana, Maximo; Coppersmith, Susan; Kadanoff, Leo P. (2003). "Boolean Dynamics with Random Couplings". Perspectives and Problems in Nonlinear Science: A Celebratory Volume in Honor of Lawrence Sirovich. pp. 23–89. arXiv:nlin/0204062. doi:10.1007/978-0-387-21789-5_2. ISBN 978-1-4684-9566-9. S2CID 15024306.
Greil, Florian (2012). "Boolean Networks as Modeling Framework". Frontiers in Plant Science. 3: 178. doi:10.3389/fpls.2012.00178. PMC 3419389. PMID 22912642.
Bastolla, U.; Parisi, G. (May 1998). "The modular structure of Kauffman networks". Physica D: Nonlinear Phenomena. 115 (3–4): 219–233. arXiv:cond-mat/9708214. Bibcode:1998PhyD..115..219B. doi:10.1016/S0167-2789(97)00242-X. S2CID 1585753.
Bilke, Sven; Sjunnesson, Fredrik (December 2001). "Stability of the Kauffman model". Physical Review E. 65 (1): 016129. arXiv:cond-mat/0107035. Bibcode:2001PhRvE..65a6129B. doi:10.1103/PhysRevE.65.016129. PMID 11800758. S2CID 2470586.
Socolar, J.; Kauffman, S. (February 2003). "Scaling in Ordered and Critical Random Boolean Networks". Physical Review Letters. 90 (6): 068702. arXiv:cond-mat/0212306. Bibcode:2003PhRvL..90f8702S. doi:10.1103/PhysRevLett.90.068702. PMID 12633339. S2CID 14392074.
Samuelsson, Björn; Troein, Carl (March 2003). "Superpolynomial Growth in the Number of Attractors in Kauffman Networks". Physical Review Letters. 90 (9): 098701. Bibcode:2003PhRvL..90i8701S. doi:10.1103/PhysRevLett.90.098701. PMID 12689263.
Mihaljev, Tamara; Drossel, Barbara (October 2006). "Scaling in a general class of critical random Boolean networks". Physical Review E. 74 (4): 046101. arXiv:cond-mat/0606612. Bibcode:2006PhRvE..74d6101M. doi:10.1103/PhysRevE.74.046101. PMID 17155127. S2CID 17739744.
Kauffman, S. A. (1969). "Metabolic stability and epigenesis in randomly constructed genetic nets". Journal of Theoretical Biology. 22 (3): 437–467. Bibcode:1969JThBi..22..437K. doi:10.1016/0022-5193(69)90015-0. PMID 5803332.
Derrida, B; Pomeau, Y (1986-01-15). "Random Networks of Automata: A Simple Annealed Approximation". Europhysics Letters (EPL). 1 (2): 45–49. Bibcode:1986EL......1...45D. doi:10.1209/0295-5075/1/2/001. S2CID 160018158. Archived from the original on 2020-05-17. Retrieved 2016-01-12.
Solé, Ricard V.; Luque, Bartolo (1995-01-02). "Phase transitions and antichaos in generalized Kauffman networks". Physics Letters A. 196 (5–6): 331–334. Bibcode:1995PhLA..196..331S. doi:10.1016/0375-9601(94)00876-Q.
Luque, Bartolo; Solé, Ricard V. (1997-01-01). "Phase transitions in random networks: Simple analytic determination of critical points". Physical Review E. 55 (1): 257–260. Bibcode:1997PhRvE..55..257L. doi:10.1103/PhysRevE.55.257.
Fox, Jeffrey J.; Hill, Colin C. (2001-12-01). "From topology to dynamics in biochemical networks". Chaos: An Interdisciplinary Journal of Nonlinear Science. 11 (4): 809–815. Bibcode:2001Chaos..11..809F. doi:10.1063/1.1414882. ISSN 1054-1500. PMID 12779520.
Aldana, Maximino; Cluzel, Philippe (2003-07-22). "A natural class of robust networks". Proceedings of the National Academy of Sciences. 100 (15): 8710–8714. Bibcode:2003PNAS..100.8710A. doi:10.1073/pnas.1536783100. ISSN 0027-8424. PMC 166377. PMID 12853565.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.
Aldana, Maximino (October 2003). "Boolean dynamics of networks with scale-free topology". Physica D: Nonlinear Phenomena. 185 (1): 45–66. arXiv:cond-mat/0209571. Bibcode:2003PhyD..185...45A. doi:10.1016/s0167-2789(03)00174-x.
Drossel, Barbara; Greil, Florian (4 August 2009). "Critical Boolean networks with scale-free in-degree distribution". Physical Review E. 80 (2): 026102. arXiv:0901.0387. Bibcode:2009PhRvE..80b6102D. doi:10.1103/PhysRevE.80.026102. PMID 19792195. S2CID 2487442.
Gershenson, Carlos; Broekaert, Jan; Aerts, Diederik (14 September 2003). "Contextual Random Boolean Networks". Advances in Artificial Life [7th European Conference, ECAL 2003]. Lecture Notes in Computer Science. Vol. 2801. Dortmund, Germany. pp. 615–624. arXiv:nlin/0303021. doi:10.1007/978-3-540-39432-7_66. ISBN 978-3-540-39432-7. S2CID 4309400.{{cite book}}: CS1 maint: location missing publisher (link)
Imani, M.; Braga-Neto, U. M. (2017-01-01). "Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems". IEEE Transactions on Signal Processing. 65 (2): 359–371. arXiv:1702.07269. Bibcode:2017ITSP...65..359I. doi:10.1109/TSP.2016.2614798. ISSN 1053-587X. S2CID 178376.
Imani, M.; Braga-Neto, U. M. (2015). "Optimal state estimation for boolean dynamical systems using a boolean Kalman smoother". 2015 IEEE Global Conference on Signal and Information Processing (GlobalSIP). pp. 972–976. doi:10.1109/GlobalSIP.2015.7418342. ISBN 978-1-4799-7591-4. S2CID 8672734.
Imani, M.; Braga-Neto, U. M. (2016). 2016 American Control Conference (ACC). pp. 227–232. doi:10.1109/ACC.2016.7524920. ISBN 978-1-4673-8682-1. S2CID 7210088.
Imani, M.; Braga-Neto, U. (2016-12-01). "Point-based value iteration for partially-observed Boolean dynamical systems with finite observation space". 2016 IEEE 55th Conference on Decision and Control (CDC). pp. 4208–4213. doi:10.1109/CDC.2016.7798908. ISBN 978-1-5090-1837-6. S2CID 11341805.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.

harvard.edu

ui.adsabs.harvard.edu

Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.
Li, J.; Bench, A. J.; Vassiliou, G. S.; Fourouclas, N.; Ferguson-Smith, A. C.; Green, A. R. (30 April 2004). "Imprinting of the human L3MBTL gene, a polycomb family member located in a region of chromosome 20 deleted in human myeloid malignancies". Proceedings of the National Academy of Sciences. 101 (19): 7341–7346. Bibcode:2004PNAS..101.7341L. doi:10.1073/pnas.0308195101. PMC 409920. PMID 15123827.
Kauffman, Stuart (11 October 1969). "Homeostasis and Differentiation in Random Genetic Control Networks". Nature. 224 (5215): 177–178. Bibcode:1969Natur.224..177K. doi:10.1038/224177a0. PMID 5343519. S2CID 4179318.
Gershenson, Carlos (2004). "Introduction to Random Boolean Networks". In Bedau, M., P. Husbands, T. Hutton, S. Kumar, and H. Suzuki (Eds.) Workshop and Tutorial Proceedings, Ninth International Conference on the Simulation and Synthesis of Living Systems (ALife IX). Pp. 2004: 160–173. arXiv:nlin.AO/0408006. Bibcode:2004nlin......8006G.
Bastolla, U.; Parisi, G. (May 1998). "The modular structure of Kauffman networks". Physica D: Nonlinear Phenomena. 115 (3–4): 219–233. arXiv:cond-mat/9708214. Bibcode:1998PhyD..115..219B. doi:10.1016/S0167-2789(97)00242-X. S2CID 1585753.
Bilke, Sven; Sjunnesson, Fredrik (December 2001). "Stability of the Kauffman model". Physical Review E. 65 (1): 016129. arXiv:cond-mat/0107035. Bibcode:2001PhRvE..65a6129B. doi:10.1103/PhysRevE.65.016129. PMID 11800758. S2CID 2470586.
Socolar, J.; Kauffman, S. (February 2003). "Scaling in Ordered and Critical Random Boolean Networks". Physical Review Letters. 90 (6): 068702. arXiv:cond-mat/0212306. Bibcode:2003PhRvL..90f8702S. doi:10.1103/PhysRevLett.90.068702. PMID 12633339. S2CID 14392074.
Samuelsson, Björn; Troein, Carl (March 2003). "Superpolynomial Growth in the Number of Attractors in Kauffman Networks". Physical Review Letters. 90 (9): 098701. Bibcode:2003PhRvL..90i8701S. doi:10.1103/PhysRevLett.90.098701. PMID 12689263.
Mihaljev, Tamara; Drossel, Barbara (October 2006). "Scaling in a general class of critical random Boolean networks". Physical Review E. 74 (4): 046101. arXiv:cond-mat/0606612. Bibcode:2006PhRvE..74d6101M. doi:10.1103/PhysRevE.74.046101. PMID 17155127. S2CID 17739744.
Kauffman, S. A. (1969). "Metabolic stability and epigenesis in randomly constructed genetic nets". Journal of Theoretical Biology. 22 (3): 437–467. Bibcode:1969JThBi..22..437K. doi:10.1016/0022-5193(69)90015-0. PMID 5803332.
Derrida, B; Pomeau, Y (1986-01-15). "Random Networks of Automata: A Simple Annealed Approximation". Europhysics Letters (EPL). 1 (2): 45–49. Bibcode:1986EL......1...45D. doi:10.1209/0295-5075/1/2/001. S2CID 160018158. Archived from the original on 2020-05-17. Retrieved 2016-01-12.
Solé, Ricard V.; Luque, Bartolo (1995-01-02). "Phase transitions and antichaos in generalized Kauffman networks". Physics Letters A. 196 (5–6): 331–334. Bibcode:1995PhLA..196..331S. doi:10.1016/0375-9601(94)00876-Q.
Luque, Bartolo; Solé, Ricard V. (1997-01-01). "Phase transitions in random networks: Simple analytic determination of critical points". Physical Review E. 55 (1): 257–260. Bibcode:1997PhRvE..55..257L. doi:10.1103/PhysRevE.55.257.
Fox, Jeffrey J.; Hill, Colin C. (2001-12-01). "From topology to dynamics in biochemical networks". Chaos: An Interdisciplinary Journal of Nonlinear Science. 11 (4): 809–815. Bibcode:2001Chaos..11..809F. doi:10.1063/1.1414882. ISSN 1054-1500. PMID 12779520.
Aldana, Maximino; Cluzel, Philippe (2003-07-22). "A natural class of robust networks". Proceedings of the National Academy of Sciences. 100 (15): 8710–8714. Bibcode:2003PNAS..100.8710A. doi:10.1073/pnas.1536783100. ISSN 0027-8424. PMC 166377. PMID 12853565.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.
Aldana, Maximino (October 2003). "Boolean dynamics of networks with scale-free topology". Physica D: Nonlinear Phenomena. 185 (1): 45–66. arXiv:cond-mat/0209571. Bibcode:2003PhyD..185...45A. doi:10.1016/s0167-2789(03)00174-x.
Drossel, Barbara; Greil, Florian (4 August 2009). "Critical Boolean networks with scale-free in-degree distribution". Physical Review E. 80 (2): 026102. arXiv:0901.0387. Bibcode:2009PhRvE..80b6102D. doi:10.1103/PhysRevE.80.026102. PMID 19792195. S2CID 2487442.
Gershenson, Carlos (2002). "Classification of Random Boolean Networks". In Standish, Russell K; Bedau, Mark A (eds.). Proceedings of the Eighth International Conference on Artificial Life. Artificial Life. Vol. 8. Cambridge, Massachusetts, USA. pp. 1–8. arXiv:cs/0208001. Bibcode:2002cs........8001G. ISBN 9780262692816. Archived from the original on 4 February 2023. Retrieved 12 January 2016.{{cite book}}: CS1 maint: location missing publisher (link)
Imani, M.; Braga-Neto, U. M. (2017-01-01). "Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems". IEEE Transactions on Signal Processing. 65 (2): 359–371. arXiv:1702.07269. Bibcode:2017ITSP...65..359I. doi:10.1109/TSP.2016.2614798. ISSN 1053-587X. S2CID 178376.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.

iop.org

stacks.iop.org

Derrida, B; Pomeau, Y (1986-01-15). "Random Networks of Automata: A Simple Annealed Approximation". Europhysics Letters (EPL). 1 (2): 45–49. Bibcode:1986EL......1...45D. doi:10.1209/0295-5075/1/2/001. S2CID 160018158. Archived from the original on 2020-05-17. Retrieved 2016-01-12.

nih.gov

pubmed.ncbi.nlm.nih.gov

Naldi, A.; Monteiro, P. T.; Mussel, C.; Kestler, H. A.; Thieffry, D.; Xenarios, I.; Saez-Rodriguez, J.; Helikar, T.; Chaouiya, C. (25 January 2015). "Cooperative development of logical modelling standards and tools with CoLoMoTo". Bioinformatics. 31 (7): 1154–1159. doi:10.1093/bioinformatics/btv013. PMID 25619997.
Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.
Li, J.; Bench, A. J.; Vassiliou, G. S.; Fourouclas, N.; Ferguson-Smith, A. C.; Green, A. R. (30 April 2004). "Imprinting of the human L3MBTL gene, a polycomb family member located in a region of chromosome 20 deleted in human myeloid malignancies". Proceedings of the National Academy of Sciences. 101 (19): 7341–7346. Bibcode:2004PNAS..101.7341L. doi:10.1073/pnas.0308195101. PMC 409920. PMID 15123827.
Kauffman, Stuart (11 October 1969). "Homeostasis and Differentiation in Random Genetic Control Networks". Nature. 224 (5215): 177–178. Bibcode:1969Natur.224..177K. doi:10.1038/224177a0. PMID 5343519. S2CID 4179318.
Greil, Florian (2012). "Boolean Networks as Modeling Framework". Frontiers in Plant Science. 3: 178. doi:10.3389/fpls.2012.00178. PMC 3419389. PMID 22912642.
Bilke, Sven; Sjunnesson, Fredrik (December 2001). "Stability of the Kauffman model". Physical Review E. 65 (1): 016129. arXiv:cond-mat/0107035. Bibcode:2001PhRvE..65a6129B. doi:10.1103/PhysRevE.65.016129. PMID 11800758. S2CID 2470586.
Socolar, J.; Kauffman, S. (February 2003). "Scaling in Ordered and Critical Random Boolean Networks". Physical Review Letters. 90 (6): 068702. arXiv:cond-mat/0212306. Bibcode:2003PhRvL..90f8702S. doi:10.1103/PhysRevLett.90.068702. PMID 12633339. S2CID 14392074.
Samuelsson, Björn; Troein, Carl (March 2003). "Superpolynomial Growth in the Number of Attractors in Kauffman Networks". Physical Review Letters. 90 (9): 098701. Bibcode:2003PhRvL..90i8701S. doi:10.1103/PhysRevLett.90.098701. PMID 12689263.
Mihaljev, Tamara; Drossel, Barbara (October 2006). "Scaling in a general class of critical random Boolean networks". Physical Review E. 74 (4): 046101. arXiv:cond-mat/0606612. Bibcode:2006PhRvE..74d6101M. doi:10.1103/PhysRevE.74.046101. PMID 17155127. S2CID 17739744.
Kauffman, S. A. (1969). "Metabolic stability and epigenesis in randomly constructed genetic nets". Journal of Theoretical Biology. 22 (3): 437–467. Bibcode:1969JThBi..22..437K. doi:10.1016/0022-5193(69)90015-0. PMID 5803332.
Fox, Jeffrey J.; Hill, Colin C. (2001-12-01). "From topology to dynamics in biochemical networks". Chaos: An Interdisciplinary Journal of Nonlinear Science. 11 (4): 809–815. Bibcode:2001Chaos..11..809F. doi:10.1063/1.1414882. ISSN 1054-1500. PMID 12779520.
Aldana, Maximino; Cluzel, Philippe (2003-07-22). "A natural class of robust networks". Proceedings of the National Academy of Sciences. 100 (15): 8710–8714. Bibcode:2003PNAS..100.8710A. doi:10.1073/pnas.1536783100. ISSN 0027-8424. PMC 166377. PMID 12853565.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.
Drossel, Barbara; Greil, Florian (4 August 2009). "Critical Boolean networks with scale-free in-degree distribution". Physical Review E. 80 (2): 026102. arXiv:0901.0387. Bibcode:2009PhRvE..80b6102D. doi:10.1103/PhysRevE.80.026102. PMID 19792195. S2CID 2487442.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.

ncbi.nlm.nih.gov

Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.
Li, J.; Bench, A. J.; Vassiliou, G. S.; Fourouclas, N.; Ferguson-Smith, A. C.; Green, A. R. (30 April 2004). "Imprinting of the human L3MBTL gene, a polycomb family member located in a region of chromosome 20 deleted in human myeloid malignancies". Proceedings of the National Academy of Sciences. 101 (19): 7341–7346. Bibcode:2004PNAS..101.7341L. doi:10.1073/pnas.0308195101. PMC 409920. PMID 15123827.
Greil, Florian (2012). "Boolean Networks as Modeling Framework". Frontiers in Plant Science. 3: 178. doi:10.3389/fpls.2012.00178. PMC 3419389. PMID 22912642.
Aldana, Maximino; Cluzel, Philippe (2003-07-22). "A natural class of robust networks". Proceedings of the National Academy of Sciences. 100 (15): 8710–8714. Bibcode:2003PNAS..100.8710A. doi:10.1073/pnas.1536783100. ISSN 0027-8424. PMC 166377. PMID 12853565.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.

psu.edu

citeseerx.ist.psu.edu

Albert, Réka; Othmer, Hans G (July 2003). "The topology of the regulatory interactions predicts the expression pattern of the segment polarity genes in Drosophila melanogaster". Journal of Theoretical Biology. 223 (1): 1–18. arXiv:q-bio/0311019. Bibcode:2003JThBi.223....1A. CiteSeerX 10.1.1.13.3370. doi:10.1016/S0022-5193(03)00035-3. PMC 6388622. PMID 12782112.

semanticscholar.org

api.semanticscholar.org

Drossel, Barbara (December 2009). "Random Boolean Networks". In Schuster, Heinz Georg (ed.). Chapter 3. Random Boolean Networks. Reviews of Nonlinear Dynamics and Complexity. Wiley. pp. 69–110. arXiv:0706.3351. doi:10.1002/9783527626359.ch3. ISBN 9783527626359. S2CID 119300231.
Kauffman, Stuart (11 October 1969). "Homeostasis and Differentiation in Random Genetic Control Networks". Nature. 224 (5215): 177–178. Bibcode:1969Natur.224..177K. doi:10.1038/224177a0. PMID 5343519. S2CID 4179318.
Aldana, Maximo; Coppersmith, Susan; Kadanoff, Leo P. (2003). "Boolean Dynamics with Random Couplings". Perspectives and Problems in Nonlinear Science: A Celebratory Volume in Honor of Lawrence Sirovich. pp. 23–89. arXiv:nlin/0204062. doi:10.1007/978-0-387-21789-5_2. ISBN 978-1-4684-9566-9. S2CID 15024306.
Bastolla, U.; Parisi, G. (May 1998). "The modular structure of Kauffman networks". Physica D: Nonlinear Phenomena. 115 (3–4): 219–233. arXiv:cond-mat/9708214. Bibcode:1998PhyD..115..219B. doi:10.1016/S0167-2789(97)00242-X. S2CID 1585753.
Bilke, Sven; Sjunnesson, Fredrik (December 2001). "Stability of the Kauffman model". Physical Review E. 65 (1): 016129. arXiv:cond-mat/0107035. Bibcode:2001PhRvE..65a6129B. doi:10.1103/PhysRevE.65.016129. PMID 11800758. S2CID 2470586.
Socolar, J.; Kauffman, S. (February 2003). "Scaling in Ordered and Critical Random Boolean Networks". Physical Review Letters. 90 (6): 068702. arXiv:cond-mat/0212306. Bibcode:2003PhRvL..90f8702S. doi:10.1103/PhysRevLett.90.068702. PMID 12633339. S2CID 14392074.
Mihaljev, Tamara; Drossel, Barbara (October 2006). "Scaling in a general class of critical random Boolean networks". Physical Review E. 74 (4): 046101. arXiv:cond-mat/0606612. Bibcode:2006PhRvE..74d6101M. doi:10.1103/PhysRevE.74.046101. PMID 17155127. S2CID 17739744.
Derrida, B; Pomeau, Y (1986-01-15). "Random Networks of Automata: A Simple Annealed Approximation". Europhysics Letters (EPL). 1 (2): 45–49. Bibcode:1986EL......1...45D. doi:10.1209/0295-5075/1/2/001. S2CID 160018158. Archived from the original on 2020-05-17. Retrieved 2016-01-12.
Drossel, Barbara; Greil, Florian (4 August 2009). "Critical Boolean networks with scale-free in-degree distribution". Physical Review E. 80 (2): 026102. arXiv:0901.0387. Bibcode:2009PhRvE..80b6102D. doi:10.1103/PhysRevE.80.026102. PMID 19792195. S2CID 2487442.
Gershenson, Carlos; Broekaert, Jan; Aerts, Diederik (14 September 2003). "Contextual Random Boolean Networks". Advances in Artificial Life [7th European Conference, ECAL 2003]. Lecture Notes in Computer Science. Vol. 2801. Dortmund, Germany. pp. 615–624. arXiv:nlin/0303021. doi:10.1007/978-3-540-39432-7_66. ISBN 978-3-540-39432-7. S2CID 4309400.{{cite book}}: CS1 maint: location missing publisher (link)
Imani, M.; Braga-Neto, U. M. (2017-01-01). "Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems". IEEE Transactions on Signal Processing. 65 (2): 359–371. arXiv:1702.07269. Bibcode:2017ITSP...65..359I. doi:10.1109/TSP.2016.2614798. ISSN 1053-587X. S2CID 178376.
Imani, M.; Braga-Neto, U. M. (2015). "Optimal state estimation for boolean dynamical systems using a boolean Kalman smoother". 2015 IEEE Global Conference on Signal and Information Processing (GlobalSIP). pp. 972–976. doi:10.1109/GlobalSIP.2015.7418342. ISBN 978-1-4799-7591-4. S2CID 8672734.
Imani, M.; Braga-Neto, U. M. (2016). 2016 American Control Conference (ACC). pp. 227–232. doi:10.1109/ACC.2016.7524920. ISBN 978-1-4673-8682-1. S2CID 7210088.
Imani, M.; Braga-Neto, U. (2016-12-01). "Point-based value iteration for partially-observed Boolean dynamical systems with finite observation space". 2016 IEEE 55th Conference on Decision and Control (CDC). pp. 4208–4213. doi:10.1109/CDC.2016.7798908. ISBN 978-1-5090-1837-6. S2CID 11341805.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.

web.archive.org

Wuensche, Andrew (2011). Exploring discrete dynamics : [the DDLab manual : tools for researching cellular automata, random Boolean and multivalue neworks [sic] and beyond]. Frome, England: Luniver Press. p. 16. ISBN 9781905986316. Archived from the original on 4 February 2023. Retrieved 12 January 2016.
Derrida, B; Pomeau, Y (1986-01-15). "Random Networks of Automata: A Simple Annealed Approximation". Europhysics Letters (EPL). 1 (2): 45–49. Bibcode:1986EL......1...45D. doi:10.1209/0295-5075/1/2/001. S2CID 160018158. Archived from the original on 2020-05-17. Retrieved 2016-01-12.
Harvey, Imman; Bossomaier, Terry (1997). "Time out of joint: Attractors in asynchronous random Boolean networks". In Husbands, Phil; Harvey, Imman (eds.). Proceedings of the Fourth European Conference on Artificial Life (ECAL97). MIT Press. pp. 67–75. ISBN 9780262581578. Archived from the original on 2023-02-04. Retrieved 2020-09-16.
Gershenson, Carlos (2002). "Classification of Random Boolean Networks". In Standish, Russell K; Bedau, Mark A (eds.). Proceedings of the Eighth International Conference on Artificial Life. Artificial Life. Vol. 8. Cambridge, Massachusetts, USA. pp. 1–8. arXiv:cs/0208001. Bibcode:2002cs........8001G. ISBN 9780262692816. Archived from the original on 4 February 2023. Retrieved 12 January 2016.{{cite book}}: CS1 maint: location missing publisher (link)
Hajiramezanali, E. & Imani, M. & Braga-Neto, U. & Qian, X. & Dougherty, E.. Scalable Optimal Bayesian Classification of Single-Cell Trajectories under Regulatory Model Uncertainty. ACMBCB'18. https://dl.acm.org/citation.cfm?id=3233689 Archived 2021-03-22 at the Wayback Machine

worldcat.org

search.worldcat.org

Fox, Jeffrey J.; Hill, Colin C. (2001-12-01). "From topology to dynamics in biochemical networks". Chaos: An Interdisciplinary Journal of Nonlinear Science. 11 (4): 809–815. Bibcode:2001Chaos..11..809F. doi:10.1063/1.1414882. ISSN 1054-1500. PMID 12779520.
Aldana, Maximino; Cluzel, Philippe (2003-07-22). "A natural class of robust networks". Proceedings of the National Academy of Sciences. 100 (15): 8710–8714. Bibcode:2003PNAS..100.8710A. doi:10.1073/pnas.1536783100. ISSN 0027-8424. PMC 166377. PMID 12853565.
Pomerance, Andrew; Ott, Edward; Girvan, Michelle; Losert, Wolfgang (2009-05-19). "The effect of network topology on the stability of discrete state models of genetic control". Proceedings of the National Academy of Sciences. 106 (20): 8209–8214. arXiv:0901.4362. Bibcode:2009PNAS..106.8209P. doi:10.1073/pnas.0900142106. ISSN 0027-8424. PMC 2688895. PMID 19416903.
Imani, M.; Braga-Neto, U. M. (2017-01-01). "Maximum-Likelihood Adaptive Filter for Partially Observed Boolean Dynamical Systems". IEEE Transactions on Signal Processing. 65 (2): 359–371. arXiv:1702.07269. Bibcode:2017ITSP...65..359I. doi:10.1109/TSP.2016.2614798. ISSN 1053-587X. S2CID 178376.
Zhang, Rui; Cavalcante, Hugo L. D. de S.; Gao, Zheng; Gauthier, Daniel J.; Socolar, Joshua E. S.; Adams, Matthew M.; Lathrop, Daniel P. (2009). "Boolean chaos". Physical Review E. 80 (4): 045202. arXiv:0906.4124. Bibcode:2009PhRvE..80d5202Z. doi:10.1103/PhysRevE.80.045202. ISSN 1539-3755. PMID 19905381. S2CID 43022955.
Cavalcante, Hugo L. D. de S.; Gauthier, Daniel J.; Socolar, Joshua E. S.; Zhang, Rui (2010). "On the origin of chaos in autonomous Boolean networks". Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences. 368 (1911): 495–513. arXiv:0909.2269. Bibcode:2010RSPTA.368..495C. doi:10.1098/rsta.2009.0235. ISSN 1364-503X. PMID 20008414. S2CID 426841.