CITE-Seq (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "CITE-Seq" in English language version.

refsWebsite

Global rank English rank

22nih.gov

4^th place

15doi.org

2^nd place

11worldcat.org

5^th place

2semanticscholar.org

11^th place

8^th place

2harvard.edu

18^th place

17^th place

1cite-seq.com

low place

1github.com

383^rd place

320^th place

1satijalab.org

low place

1handle.net

102^nd place

76^th place

cite-seq.com

"CITE-seq". CITE-seq. Retrieved 2019-02-27.

doi.org

Mercatelli, Daniele; Balboni, Nicola; De Giorgio, Francesca; Aleo, Emanuela; Garone, Caterina; Giorgi, Fedrico M. (2021-05-06). "The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow". Methods and Protocols. 4 (2): 28. doi:10.3390/mps4020028. ISSN 2409-9279. PMC 8163004. PMID 34066513.
Stoeckius, Marlon; Hafemeister, Christoph; Stephenson, William; Houck-Loomis, Brian; Chattopadhyay, Pratip K; Swerdlow, Harold; Satija, Rahul; Smibert, Peter (2017-07-31). "Simultaneous epitope and transcriptome measurement in single cells". Nature Methods. 14 (9): 865–868. doi:10.1038/nmeth.4380. ISSN 1548-7091. PMC 5669064. PMID 28759029.
Tirosh, Itay; Suvà, Mario L. (2018-11-16). "Deciphering Human Tumor Biology by Single-Cell Expression Profiling". Annual Review of Cancer Biology. 3 (1): 151–166. doi:10.1146/annurev-cancerbio-030518-055609. ISSN 2472-3428. S2CID 53969464.
Gutierrez-Arcelus, Maria; Teslovich, Nikola; Mola, Alex R.; Polidoro, Rafael B.; Nathan, Aparna; Kim, Hyun; Hannes, Susan; Slowikowski, Kamil; Watts, Gerald F. M. (2019-02-08). "Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions". Nature Communications. 10 (1): 687. Bibcode:2019NatCo..10..687G. doi:10.1038/s41467-019-08604-4. ISSN 2041-1723. PMC 6368609. PMID 30737409.
Chattopadhyay, Pratip K.; Roederer, Mario; Bolton, Diane L. (2018-11-06). "A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies". Nature Communications. 9 (1): 4638. Bibcode:2018NatCo...9.4638C. doi:10.1038/s41467-018-06214-0. ISSN 2041-1723. PMC 6219517. PMID 30401874.
Macosko, Evan Z.; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R.; Kamitaki, Nolan (May 2015). "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets". Cell. 161 (5): 1202–1214. doi:10.1016/j.cell.2015.05.002. ISSN 0092-8674. PMC 4481139. PMID 26000488.
Gao, Shan (2018), "Data Analysis in Single-Cell Transcriptome Sequencing", Computational Systems Biology, Methods in Molecular Biology, vol. 1754, Springer New York, pp. 311–326, doi:10.1007/978-1-4939-7717-8_18, ISBN 9781493977161, PMID 29536451
Liu, Serena; Trapnell, Cole (2016-02-17). "Single-cell transcriptome sequencing: recent advances and remaining challenges". F1000Research. 5: 182. doi:10.12688/f1000research.7223.1. ISSN 2046-1402. PMC 4758375. PMID 26949524.
Stoeckius, Marlon; Zheng, Shiwei; Houck-Loomis, Brian; Hao, Stephanie; Yeung, Bertrand; Smibert, Peter; Satija, Rahul (2017-12-21). "Cell "hashing" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics". Genome Biology. 19 (1): 224. bioRxiv 10.1101/237693. doi:10.1186/s13059-018-1603-1. PMC 6300015. PMID 30567574.
Gaublomme, Jellert T.; Li, Bo; McCabe, Cristin; Knecht, Abigail; Drokhlyansky, Eugene; Van Wittenberghe, Nicholas; Waldman, Julia; Dionne, Danielle; Nguyen, Lan (2018-11-23). "Nuclei multiplexing with barcoded antibodies for single-nucleus genomics". bioRxiv. doi:10.1101/476036. hdl:1721.1/125028.
Mimitou, Eleni; Cheng, Anthony; Montalbano, Antonino; Hao, Stephanie; Stoeckius, Marlon; Legut, Mateusz; Roush, Timothy; Herrera, Alberto; Papalexi, Efthymia (2018-11-08). "Expanding the CITE-seq tool-kit: Detection of proteins, transcriptomes, clonotypes and CRISPR perturbations with multiplexing, in a single assay". bioRxiv. doi:10.1101/466466.
An, Xingyue; Varadarajan, Navin (March 2018). "Single-cell technologies for profiling T cells to enable monitoring of immunotherapies". Current Opinion in Chemical Engineering. 19: 142–152. doi:10.1016/j.coche.2018.01.003. ISSN 2211-3398. PMC 6530921. PMID 31131208.
Baron, Maayan; Yanai, Itai (2017-08-24). "New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics". Genome Biology. 18 (1): 159. doi:10.1186/s13059-017-1300-5. ISSN 1474-760X. PMC 5571565. PMID 28837001.
Peterson, Vanessa M; Zhang, Kelvin Xi; Kumar, Namit; Wong, Jerelyn; Li, Lixia; Wilson, Douglas C; Moore, Renee; McClanahan, Terrill K; Sadekova, Svetlana (2017-08-30). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. ISSN 1087-0156. PMID 28854175. S2CID 205285357.
Frei, Andreas P; Bava, Felice-Alessio; Zunder, Eli R; Hsieh, Elena W Y; Chen, Shih-Yu; Nolan, Garry P; Gherardini, Pier Federico (2016-01-25). "Highly multiplexed simultaneous detection of RNAs and proteins in single cells". Nature Methods. 13 (3): 269–275. doi:10.1038/nmeth.3742. ISSN 1548-7091. PMC 4767631. PMID 26808670.

github.com

Roelli, Patrick (2019-02-23), Small script that allows to count TAGS from a CITE-seq experiment: Hoohm/CITE-seq-Count, retrieved 2019-02-27

handle.net

hdl.handle.net

Gaublomme, Jellert T.; Li, Bo; McCabe, Cristin; Knecht, Abigail; Drokhlyansky, Eugene; Van Wittenberghe, Nicholas; Waldman, Julia; Dionne, Danielle; Nguyen, Lan (2018-11-23). "Nuclei multiplexing with barcoded antibodies for single-nucleus genomics". bioRxiv. doi:10.1101/476036. hdl:1721.1/125028.

harvard.edu

ui.adsabs.harvard.edu

Gutierrez-Arcelus, Maria; Teslovich, Nikola; Mola, Alex R.; Polidoro, Rafael B.; Nathan, Aparna; Kim, Hyun; Hannes, Susan; Slowikowski, Kamil; Watts, Gerald F. M. (2019-02-08). "Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions". Nature Communications. 10 (1): 687. Bibcode:2019NatCo..10..687G. doi:10.1038/s41467-019-08604-4. ISSN 2041-1723. PMC 6368609. PMID 30737409.
Chattopadhyay, Pratip K.; Roederer, Mario; Bolton, Diane L. (2018-11-06). "A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies". Nature Communications. 9 (1): 4638. Bibcode:2018NatCo...9.4638C. doi:10.1038/s41467-018-06214-0. ISSN 2041-1723. PMC 6219517. PMID 30401874.

nih.gov

pubmed.ncbi.nlm.nih.gov

Mercatelli, Daniele; Balboni, Nicola; De Giorgio, Francesca; Aleo, Emanuela; Garone, Caterina; Giorgi, Fedrico M. (2021-05-06). "The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow". Methods and Protocols. 4 (2): 28. doi:10.3390/mps4020028. ISSN 2409-9279. PMC 8163004. PMID 34066513.
Stoeckius, Marlon; Hafemeister, Christoph; Stephenson, William; Houck-Loomis, Brian; Chattopadhyay, Pratip K; Swerdlow, Harold; Satija, Rahul; Smibert, Peter (2017-07-31). "Simultaneous epitope and transcriptome measurement in single cells". Nature Methods. 14 (9): 865–868. doi:10.1038/nmeth.4380. ISSN 1548-7091. PMC 5669064. PMID 28759029.
Gutierrez-Arcelus, Maria; Teslovich, Nikola; Mola, Alex R.; Polidoro, Rafael B.; Nathan, Aparna; Kim, Hyun; Hannes, Susan; Slowikowski, Kamil; Watts, Gerald F. M. (2019-02-08). "Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions". Nature Communications. 10 (1): 687. Bibcode:2019NatCo..10..687G. doi:10.1038/s41467-019-08604-4. ISSN 2041-1723. PMC 6368609. PMID 30737409.
Chattopadhyay, Pratip K.; Roederer, Mario; Bolton, Diane L. (2018-11-06). "A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies". Nature Communications. 9 (1): 4638. Bibcode:2018NatCo...9.4638C. doi:10.1038/s41467-018-06214-0. ISSN 2041-1723. PMC 6219517. PMID 30401874.
Macosko, Evan Z.; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R.; Kamitaki, Nolan (May 2015). "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets". Cell. 161 (5): 1202–1214. doi:10.1016/j.cell.2015.05.002. ISSN 0092-8674. PMC 4481139. PMID 26000488.
Gao, Shan (2018), "Data Analysis in Single-Cell Transcriptome Sequencing", Computational Systems Biology, Methods in Molecular Biology, vol. 1754, Springer New York, pp. 311–326, doi:10.1007/978-1-4939-7717-8_18, ISBN 9781493977161, PMID 29536451
Liu, Serena; Trapnell, Cole (2016-02-17). "Single-cell transcriptome sequencing: recent advances and remaining challenges". F1000Research. 5: 182. doi:10.12688/f1000research.7223.1. ISSN 2046-1402. PMC 4758375. PMID 26949524.
Stoeckius, Marlon; Zheng, Shiwei; Houck-Loomis, Brian; Hao, Stephanie; Yeung, Bertrand; Smibert, Peter; Satija, Rahul (2017-12-21). "Cell "hashing" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics". Genome Biology. 19 (1): 224. bioRxiv 10.1101/237693. doi:10.1186/s13059-018-1603-1. PMC 6300015. PMID 30567574.
An, Xingyue; Varadarajan, Navin (March 2018). "Single-cell technologies for profiling T cells to enable monitoring of immunotherapies". Current Opinion in Chemical Engineering. 19: 142–152. doi:10.1016/j.coche.2018.01.003. ISSN 2211-3398. PMC 6530921. PMID 31131208.
Baron, Maayan; Yanai, Itai (2017-08-24). "New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics". Genome Biology. 18 (1): 159. doi:10.1186/s13059-017-1300-5. ISSN 1474-760X. PMC 5571565. PMID 28837001.
Peterson, Vanessa M; Zhang, Kelvin Xi; Kumar, Namit; Wong, Jerelyn; Li, Lixia; Wilson, Douglas C; Moore, Renee; McClanahan, Terrill K; Sadekova, Svetlana (2017-08-30). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. ISSN 1087-0156. PMID 28854175. S2CID 205285357.
Frei, Andreas P; Bava, Felice-Alessio; Zunder, Eli R; Hsieh, Elena W Y; Chen, Shih-Yu; Nolan, Garry P; Gherardini, Pier Federico (2016-01-25). "Highly multiplexed simultaneous detection of RNAs and proteins in single cells". Nature Methods. 13 (3): 269–275. doi:10.1038/nmeth.3742. ISSN 1548-7091. PMC 4767631. PMID 26808670.

ncbi.nlm.nih.gov

Mercatelli, Daniele; Balboni, Nicola; De Giorgio, Francesca; Aleo, Emanuela; Garone, Caterina; Giorgi, Fedrico M. (2021-05-06). "The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow". Methods and Protocols. 4 (2): 28. doi:10.3390/mps4020028. ISSN 2409-9279. PMC 8163004. PMID 34066513.
Stoeckius, Marlon; Hafemeister, Christoph; Stephenson, William; Houck-Loomis, Brian; Chattopadhyay, Pratip K; Swerdlow, Harold; Satija, Rahul; Smibert, Peter (2017-07-31). "Simultaneous epitope and transcriptome measurement in single cells". Nature Methods. 14 (9): 865–868. doi:10.1038/nmeth.4380. ISSN 1548-7091. PMC 5669064. PMID 28759029.
Gutierrez-Arcelus, Maria; Teslovich, Nikola; Mola, Alex R.; Polidoro, Rafael B.; Nathan, Aparna; Kim, Hyun; Hannes, Susan; Slowikowski, Kamil; Watts, Gerald F. M. (2019-02-08). "Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions". Nature Communications. 10 (1): 687. Bibcode:2019NatCo..10..687G. doi:10.1038/s41467-019-08604-4. ISSN 2041-1723. PMC 6368609. PMID 30737409.
Chattopadhyay, Pratip K.; Roederer, Mario; Bolton, Diane L. (2018-11-06). "A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies". Nature Communications. 9 (1): 4638. Bibcode:2018NatCo...9.4638C. doi:10.1038/s41467-018-06214-0. ISSN 2041-1723. PMC 6219517. PMID 30401874.
Macosko, Evan Z.; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R.; Kamitaki, Nolan (May 2015). "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets". Cell. 161 (5): 1202–1214. doi:10.1016/j.cell.2015.05.002. ISSN 0092-8674. PMC 4481139. PMID 26000488.
Liu, Serena; Trapnell, Cole (2016-02-17). "Single-cell transcriptome sequencing: recent advances and remaining challenges". F1000Research. 5: 182. doi:10.12688/f1000research.7223.1. ISSN 2046-1402. PMC 4758375. PMID 26949524.
Stoeckius, Marlon; Zheng, Shiwei; Houck-Loomis, Brian; Hao, Stephanie; Yeung, Bertrand; Smibert, Peter; Satija, Rahul (2017-12-21). "Cell "hashing" with barcoded antibodies enables multiplexing and doublet detection for single cell genomics". Genome Biology. 19 (1): 224. bioRxiv 10.1101/237693. doi:10.1186/s13059-018-1603-1. PMC 6300015. PMID 30567574.
An, Xingyue; Varadarajan, Navin (March 2018). "Single-cell technologies for profiling T cells to enable monitoring of immunotherapies". Current Opinion in Chemical Engineering. 19: 142–152. doi:10.1016/j.coche.2018.01.003. ISSN 2211-3398. PMC 6530921. PMID 31131208.
Baron, Maayan; Yanai, Itai (2017-08-24). "New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics". Genome Biology. 18 (1): 159. doi:10.1186/s13059-017-1300-5. ISSN 1474-760X. PMC 5571565. PMID 28837001.
Frei, Andreas P; Bava, Felice-Alessio; Zunder, Eli R; Hsieh, Elena W Y; Chen, Shih-Yu; Nolan, Garry P; Gherardini, Pier Federico (2016-01-25). "Highly multiplexed simultaneous detection of RNAs and proteins in single cells". Nature Methods. 13 (3): 269–275. doi:10.1038/nmeth.3742. ISSN 1548-7091. PMC 4767631. PMID 26808670.

satijalab.org

"Seurat". satijalab.org. Retrieved 2019-02-27.

semanticscholar.org

api.semanticscholar.org

Tirosh, Itay; Suvà, Mario L. (2018-11-16). "Deciphering Human Tumor Biology by Single-Cell Expression Profiling". Annual Review of Cancer Biology. 3 (1): 151–166. doi:10.1146/annurev-cancerbio-030518-055609. ISSN 2472-3428. S2CID 53969464.
Peterson, Vanessa M; Zhang, Kelvin Xi; Kumar, Namit; Wong, Jerelyn; Li, Lixia; Wilson, Douglas C; Moore, Renee; McClanahan, Terrill K; Sadekova, Svetlana (2017-08-30). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. ISSN 1087-0156. PMID 28854175. S2CID 205285357.

worldcat.org

search.worldcat.org

Mercatelli, Daniele; Balboni, Nicola; De Giorgio, Francesca; Aleo, Emanuela; Garone, Caterina; Giorgi, Fedrico M. (2021-05-06). "The Transcriptome of SH-SY5Y at Single-Cell Resolution: A CITE-Seq Data Analysis Workflow". Methods and Protocols. 4 (2): 28. doi:10.3390/mps4020028. ISSN 2409-9279. PMC 8163004. PMID 34066513.
Stoeckius, Marlon; Hafemeister, Christoph; Stephenson, William; Houck-Loomis, Brian; Chattopadhyay, Pratip K; Swerdlow, Harold; Satija, Rahul; Smibert, Peter (2017-07-31). "Simultaneous epitope and transcriptome measurement in single cells". Nature Methods. 14 (9): 865–868. doi:10.1038/nmeth.4380. ISSN 1548-7091. PMC 5669064. PMID 28759029.
Tirosh, Itay; Suvà, Mario L. (2018-11-16). "Deciphering Human Tumor Biology by Single-Cell Expression Profiling". Annual Review of Cancer Biology. 3 (1): 151–166. doi:10.1146/annurev-cancerbio-030518-055609. ISSN 2472-3428. S2CID 53969464.
Gutierrez-Arcelus, Maria; Teslovich, Nikola; Mola, Alex R.; Polidoro, Rafael B.; Nathan, Aparna; Kim, Hyun; Hannes, Susan; Slowikowski, Kamil; Watts, Gerald F. M. (2019-02-08). "Lymphocyte innateness defined by transcriptional states reflects a balance between proliferation and effector functions". Nature Communications. 10 (1): 687. Bibcode:2019NatCo..10..687G. doi:10.1038/s41467-019-08604-4. ISSN 2041-1723. PMC 6368609. PMID 30737409.
Chattopadhyay, Pratip K.; Roederer, Mario; Bolton, Diane L. (2018-11-06). "A deadly dance: the choreography of host–pathogen interactions, as revealed by single-cell technologies". Nature Communications. 9 (1): 4638. Bibcode:2018NatCo...9.4638C. doi:10.1038/s41467-018-06214-0. ISSN 2041-1723. PMC 6219517. PMID 30401874.
Macosko, Evan Z.; Basu, Anindita; Satija, Rahul; Nemesh, James; Shekhar, Karthik; Goldman, Melissa; Tirosh, Itay; Bialas, Allison R.; Kamitaki, Nolan (May 2015). "Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets". Cell. 161 (5): 1202–1214. doi:10.1016/j.cell.2015.05.002. ISSN 0092-8674. PMC 4481139. PMID 26000488.
Liu, Serena; Trapnell, Cole (2016-02-17). "Single-cell transcriptome sequencing: recent advances and remaining challenges". F1000Research. 5: 182. doi:10.12688/f1000research.7223.1. ISSN 2046-1402. PMC 4758375. PMID 26949524.
An, Xingyue; Varadarajan, Navin (March 2018). "Single-cell technologies for profiling T cells to enable monitoring of immunotherapies". Current Opinion in Chemical Engineering. 19: 142–152. doi:10.1016/j.coche.2018.01.003. ISSN 2211-3398. PMC 6530921. PMID 31131208.
Baron, Maayan; Yanai, Itai (2017-08-24). "New skin for the old RNA-Seq ceremony: the age of single-cell multi-omics". Genome Biology. 18 (1): 159. doi:10.1186/s13059-017-1300-5. ISSN 1474-760X. PMC 5571565. PMID 28837001.
Peterson, Vanessa M; Zhang, Kelvin Xi; Kumar, Namit; Wong, Jerelyn; Li, Lixia; Wilson, Douglas C; Moore, Renee; McClanahan, Terrill K; Sadekova, Svetlana (2017-08-30). "Multiplexed quantification of proteins and transcripts in single cells". Nature Biotechnology. 35 (10): 936–939. doi:10.1038/nbt.3973. ISSN 1087-0156. PMID 28854175. S2CID 205285357.
Frei, Andreas P; Bava, Felice-Alessio; Zunder, Eli R; Hsieh, Elena W Y; Chen, Shih-Yu; Nolan, Garry P; Gherardini, Pier Federico (2016-01-25). "Highly multiplexed simultaneous detection of RNAs and proteins in single cells". Nature Methods. 13 (3): 269–275. doi:10.1038/nmeth.3742. ISSN 1548-7091. PMC 4767631. PMID 26808670.