Cap analysis of gene expression (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Cap analysis of gene expression" in English language version.

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2semanticscholar.org

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1biotechniques.com

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biotechniques.com

Maeda, Norihiro (2008). "Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer". BioTechniques. 45 (1): 95–7. doi:10.2144/000112814. PMID 18611171. Retrieved 2016-04-28.

doi.org

Shiraki, T; Kondo, S; Katayama, S; et al. (2003-12-23). "Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage". Proc Natl Acad Sci U S A. 100 (26): 15776–81. Bibcode:2003PNAS..10015776S. doi:10.1073/pnas.2136655100. PMC 307644. PMID 14663149.
Zhao, Xiaobei (2011). "Systematic Clustering of Transcription Start Site Landscapes". PLOS ONE. 6 (8): e23409. Bibcode:2011PLoSO...623409Z. doi:10.1371/journal.pone.0023409. PMC 3160847. PMID 21887249.
Ohtake, Hideki; Ohkoto, Kuniyo; Ishimaru, Yoshihiro; Kato, Seishi (2004). "Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method". DNA Res. 11 (4): 305–9. doi:10.1093/dnares/11.4.305. PMID 15500255.
Cumbie, Jason (2015). "NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites". BMC Genomics. 16 (1): 597. doi:10.1186/s12864-015-1670-6. PMC 4534009. PMID 26268438.
Carninci, Piero (1996). "High-efficiency full-length cDNA cloning by biotinylated CAP trapper". Genomics. 37 (3): 327–36. doi:10.1006/geno.1996.0567. PMID 8938445.
Kodzius, Rimantas (2006). "CAGE: cap analysis of gene expression". Nat Methods. 3 (3): 211–22. doi:10.1038/nmeth0306-211. PMID 16489339. S2CID 32641130.
Valen, Eivind (2009). "Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE". Genome Res. 19 (2): 255–265. doi:10.1101/gr.084541.108. PMC 2652207. PMID 19074369.
Maeda, Norihiro (2008). "Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer". BioTechniques. 45 (1): 95–7. doi:10.2144/000112814. PMID 18611171. Retrieved 2016-04-28.
Plessy, Charles (2010). "Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan". Nat Methods. 7 (7): 528–34. doi:10.1038/nmeth.1470. PMC 2906222. PMID 20543846.
Kanamori-Katayama, Mutsumi (2011). "Unamplified cap analysis of gene expression on a single-molecule sequencer". Genome Res. 21 (7): 1150–9. doi:10.1101/gr.115469.110. PMC 3129257. PMID 21596820.
Itoh, Masayoshi (2012). "Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer". PLOS ONE. 7 (1): e30809. Bibcode:2012PLoSO...730809I. doi:10.1371/journal.pone.0030809. PMC 3268765. PMID 22303458.
Takahashi, Hazuki (2012). "5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing". Nat Protoc. 7 (3): 542–61. doi:10.1038/nprot.2012.005. PMC 4094379. PMID 22362160.
Batut, Philippe (2013). "High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression". Genome Res. 23 (1): 169–80. doi:10.1101/gr.139618.112. PMC 3530677. PMID 22936248.
Murata, Mitsuyoshi (2014). "Detecting Expressed Genes Using CAGE". Transcription Factor Regulatory Networks. Methods in Molecular Biology. Vol. 1164. pp. 67–85. doi:10.1007/978-1-4939-0805-9_7. ISBN 978-1-4939-0804-2. PMID 24927836.
Poulain, Stéphane (2017). "NanoCAGE: A Method for the Analysis of Coding and Noncoding 5′-Capped Transcriptomes". Promoter Associated RNA. Methods in Molecular Biology. Vol. 1543. pp. 57–109. doi:10.1007/978-1-4939-6716-2_4. ISBN 978-1-4939-6714-8. PMID 28349422.
Cvetesic, Nevena (2018). "SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA". Genome Research. 28 (12): 1943–1956. doi:10.1101/gr.235937.118. PMC 6280763. PMID 30404778.
Takahashi, Hazuki (2021). "Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters". Enhancers and Promoters. Methods Mol Biol. Vol. 2351. pp. 67–90. doi:10.1007/978-1-0716-1597-3_4. ISBN 978-1-0716-1596-6. PMID 34382184. S2CID 243553132.

harvard.edu

ui.adsabs.harvard.edu

Shiraki, T; Kondo, S; Katayama, S; et al. (2003-12-23). "Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage". Proc Natl Acad Sci U S A. 100 (26): 15776–81. Bibcode:2003PNAS..10015776S. doi:10.1073/pnas.2136655100. PMC 307644. PMID 14663149.
Zhao, Xiaobei (2011). "Systematic Clustering of Transcription Start Site Landscapes". PLOS ONE. 6 (8): e23409. Bibcode:2011PLoSO...623409Z. doi:10.1371/journal.pone.0023409. PMC 3160847. PMID 21887249.
Itoh, Masayoshi (2012). "Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer". PLOS ONE. 7 (1): e30809. Bibcode:2012PLoSO...730809I. doi:10.1371/journal.pone.0030809. PMC 3268765. PMID 22303458.

nih.gov

pubmed.ncbi.nlm.nih.gov

Shiraki, T; Kondo, S; Katayama, S; et al. (2003-12-23). "Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage". Proc Natl Acad Sci U S A. 100 (26): 15776–81. Bibcode:2003PNAS..10015776S. doi:10.1073/pnas.2136655100. PMC 307644. PMID 14663149.
Zhao, Xiaobei (2011). "Systematic Clustering of Transcription Start Site Landscapes". PLOS ONE. 6 (8): e23409. Bibcode:2011PLoSO...623409Z. doi:10.1371/journal.pone.0023409. PMC 3160847. PMID 21887249.
Ohtake, Hideki; Ohkoto, Kuniyo; Ishimaru, Yoshihiro; Kato, Seishi (2004). "Determination of the capped site sequence of mRNA based on the detection of cap-dependent nucleotide addition using an anchor ligation method". DNA Res. 11 (4): 305–9. doi:10.1093/dnares/11.4.305. PMID 15500255.
Cumbie, Jason (2015). "NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites". BMC Genomics. 16 (1): 597. doi:10.1186/s12864-015-1670-6. PMC 4534009. PMID 26268438.
Carninci, Piero (1996). "High-efficiency full-length cDNA cloning by biotinylated CAP trapper". Genomics. 37 (3): 327–36. doi:10.1006/geno.1996.0567. PMID 8938445.
Kodzius, Rimantas (2006). "CAGE: cap analysis of gene expression". Nat Methods. 3 (3): 211–22. doi:10.1038/nmeth0306-211. PMID 16489339. S2CID 32641130.
Valen, Eivind (2009). "Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE". Genome Res. 19 (2): 255–265. doi:10.1101/gr.084541.108. PMC 2652207. PMID 19074369.
Maeda, Norihiro (2008). "Development of a DNA barcode tagging method for monitoring dynamic changes in gene expression by using an ultra high-throughput sequencer". BioTechniques. 45 (1): 95–7. doi:10.2144/000112814. PMID 18611171. Retrieved 2016-04-28.
Plessy, Charles (2010). "Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan". Nat Methods. 7 (7): 528–34. doi:10.1038/nmeth.1470. PMC 2906222. PMID 20543846.
Kanamori-Katayama, Mutsumi (2011). "Unamplified cap analysis of gene expression on a single-molecule sequencer". Genome Res. 21 (7): 1150–9. doi:10.1101/gr.115469.110. PMC 3129257. PMID 21596820.
Itoh, Masayoshi (2012). "Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer". PLOS ONE. 7 (1): e30809. Bibcode:2012PLoSO...730809I. doi:10.1371/journal.pone.0030809. PMC 3268765. PMID 22303458.
Takahashi, Hazuki (2012). "5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing". Nat Protoc. 7 (3): 542–61. doi:10.1038/nprot.2012.005. PMC 4094379. PMID 22362160.
Batut, Philippe (2013). "High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression". Genome Res. 23 (1): 169–80. doi:10.1101/gr.139618.112. PMC 3530677. PMID 22936248.
Murata, Mitsuyoshi (2014). "Detecting Expressed Genes Using CAGE". Transcription Factor Regulatory Networks. Methods in Molecular Biology. Vol. 1164. pp. 67–85. doi:10.1007/978-1-4939-0805-9_7. ISBN 978-1-4939-0804-2. PMID 24927836.
Poulain, Stéphane (2017). "NanoCAGE: A Method for the Analysis of Coding and Noncoding 5′-Capped Transcriptomes". Promoter Associated RNA. Methods in Molecular Biology. Vol. 1543. pp. 57–109. doi:10.1007/978-1-4939-6716-2_4. ISBN 978-1-4939-6714-8. PMID 28349422.
Cvetesic, Nevena (2018). "SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA". Genome Research. 28 (12): 1943–1956. doi:10.1101/gr.235937.118. PMC 6280763. PMID 30404778.
Takahashi, Hazuki (2021). "Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters". Enhancers and Promoters. Methods Mol Biol. Vol. 2351. pp. 67–90. doi:10.1007/978-1-0716-1597-3_4. ISBN 978-1-0716-1596-6. PMID 34382184. S2CID 243553132.

ncbi.nlm.nih.gov

Shiraki, T; Kondo, S; Katayama, S; et al. (2003-12-23). "Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage". Proc Natl Acad Sci U S A. 100 (26): 15776–81. Bibcode:2003PNAS..10015776S. doi:10.1073/pnas.2136655100. PMC 307644. PMID 14663149.
Zhao, Xiaobei (2011). "Systematic Clustering of Transcription Start Site Landscapes". PLOS ONE. 6 (8): e23409. Bibcode:2011PLoSO...623409Z. doi:10.1371/journal.pone.0023409. PMC 3160847. PMID 21887249.
Cumbie, Jason (2015). "NanoCAGE-XL and CapFilter: an approach to genome wide identification of high confidence transcription start sites". BMC Genomics. 16 (1): 597. doi:10.1186/s12864-015-1670-6. PMC 4534009. PMID 26268438.
Valen, Eivind (2009). "Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE". Genome Res. 19 (2): 255–265. doi:10.1101/gr.084541.108. PMC 2652207. PMID 19074369.
Plessy, Charles (2010). "Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan". Nat Methods. 7 (7): 528–34. doi:10.1038/nmeth.1470. PMC 2906222. PMID 20543846.
Kanamori-Katayama, Mutsumi (2011). "Unamplified cap analysis of gene expression on a single-molecule sequencer". Genome Res. 21 (7): 1150–9. doi:10.1101/gr.115469.110. PMC 3129257. PMID 21596820.
Itoh, Masayoshi (2012). "Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer". PLOS ONE. 7 (1): e30809. Bibcode:2012PLoSO...730809I. doi:10.1371/journal.pone.0030809. PMC 3268765. PMID 22303458.
Takahashi, Hazuki (2012). "5' end-centered expression profiling using cap-analysis gene expression and next-generation sequencing". Nat Protoc. 7 (3): 542–61. doi:10.1038/nprot.2012.005. PMC 4094379. PMID 22362160.
Batut, Philippe (2013). "High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression". Genome Res. 23 (1): 169–80. doi:10.1101/gr.139618.112. PMC 3530677. PMID 22936248.
Cvetesic, Nevena (2018). "SLIC-CAGE: high-resolution transcription start site mapping using nanogram-levels of total RNA". Genome Research. 28 (12): 1943–1956. doi:10.1101/gr.235937.118. PMC 6280763. PMID 30404778.

semanticscholar.org

api.semanticscholar.org

Kodzius, Rimantas (2006). "CAGE: cap analysis of gene expression". Nat Methods. 3 (3): 211–22. doi:10.1038/nmeth0306-211. PMID 16489339. S2CID 32641130.
Takahashi, Hazuki (2021). "Low Quantity Single Strand CAGE (LQ-ssCAGE) Maps Regulatory Enhancers and Promoters". Enhancers and Promoters. Methods Mol Biol. Vol. 2351. pp. 67–90. doi:10.1007/978-1-0716-1597-3_4. ISBN 978-1-0716-1596-6. PMID 34382184. S2CID 243553132.