Carboxysome (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Carboxysome" in English language version.

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102nih.gov

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72doi.org

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17semanticscholar.org

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13harvard.edu

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5handle.net

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2worldcat.org

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1psu.edu

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Mangan NM, Flamholz A, Hood RD, Milo R, Savage DF (September 2016). "pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism". Proceedings of the National Academy of Sciences of the United States of America. 113 (36): E5354 – E5362. Bibcode:2016PNAS..113E5354M. doi:10.1073/pnas.1525145113. PMC 5018799. PMID 27551079.
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Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO (August 2005). "Protein structures forming the shell of primitive bacterial organelles". Science. 309 (5736): 936–938. Bibcode:2005Sci...309..936K. CiteSeerX 10.1.1.1026.896. doi:10.1126/science.1113397. PMID 16081736. S2CID 24561197.
Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, Yeates TO (February 2008). "Atomic-level models of the bacterial carboxysome shell". Science. 319 (5866): 1083–1086. Bibcode:2008Sci...319.1083T. doi:10.1126/science.1151458. PMID 18292340. S2CID 5734731.
Cai F, Sutter M, Cameron JC, Stanley DN, Kinney JN, Kerfeld CA (May 2013). "The structure of CcmP, a tandem bacterial microcompartment domain protein from the β-carboxysome, forms a subcompartment within a microcompartment". The Journal of Biological Chemistry. 288 (22): 16055–16063. doi:10.1074/jbc.M113.456897. PMC 3668761. PMID 23572529.
Klein MG, Zwart P, Bagby SC, Cai F, Chisholm SW, Heinhorst S, et al. (September 2009). "Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport". Journal of Molecular Biology. 392 (2): 319–333. doi:10.1016/j.jmb.2009.03.056. hdl:1721.1/61355. PMID 19328811. S2CID 42771660.
Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA (November 2019). "Structure of a Synthetic β-Carboxysome Shell". Plant Physiology. 181 (3): 1050–1058. doi:10.2210/pdb6owg/pdbx. PMC 6836842. PMID 31501298.
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Cai F, Dou Z, Bernstein SL, Leverenz R, Williams EB, Heinhorst S, et al. (March 2015). "Advances in Understanding Carboxysome Assembly in Prochlorococcus and Synechococcus Implicate CsoS2 as a Critical Component". Life. 5 (2): 1141–1171. Bibcode:2015Life....5.1141C. doi:10.3390/life5021141. PMC 4499774. PMID 25826651.
Oltrogge LM, Chaijarasphong T, Chen AW, Bolin ER, Marqusee S, Savage DF (March 2020). "Multivalent interactions between CsoS2 and Rubisco mediate α-carboxysome formation". Nature Structural & Molecular Biology. 27 (3): 281–287. doi:10.1038/s41594-020-0387-7. PMC 7337323. PMID 32123388.
Wang H, Yan X, Aigner H, Bracher A, Nguyen ND, Hee WY, et al. (February 2019). "Rubisco condensate formation by CcmM in β-carboxysome biogenesis". Nature. 566 (7742): 131–135. Bibcode:2019Natur.566..131W. doi:10.1038/s41586-019-0880-5. hdl:1885/173112. PMID 30675061. S2CID 256770108.
Turnšek JB, Oltrogge LM, Savage DF (2023-07-08). "Conserved and repetitive motifs in an intrinsically disordered protein drive α-carboxysome assembly". bioRxiv. Cold Spring Harbor Laboratory (CSHL). doi:10.1101/2023.07.08.548221. S2CID 259834050.
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Rae BD, Long BM, Badger MR, Price GD (September 2013). "Functions, compositions, and evolution of the two types of carboxysomes: polyhedral microcompartments that facilitate CO2 fixation in cyanobacteria and some proteobacteria". Microbiology and Molecular Biology Reviews. 77 (3): 357–379. doi:10.1128/MMBR.00061-12. PMC 3811607. PMID 24006469.
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Cannon GC, Shively JM (1983). "Characterization of a homogenous preparation of carboxysomes from Thiobacillus neapolitanus". Archives of Microbiology. 134 (1): 52–59. doi:10.1007/BF00429407. ISSN 0302-8933. S2CID 22329896.
Heinhorst S, Cannon GC, Shively JM (2014). "Carboxysomes and Their Structural Organization in Prokaryotes". Nanomicrobiology. pp. 75–101. doi:10.1007/978-1-4939-1667-2_4. ISBN 978-1-4939-1666-5.
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Tan YQ, Ali S, Xue B, Teo WZ, Ling LH, Go MK, et al. (October 2021). "Structure of a Minimal α-Carboxysome-Derived Shell and Its Utility in Enzyme Stabilization". Biomacromolecules. 22 (10): 4095–4109. doi:10.1021/acs.biomac.1c00533. PMID 34384019. S2CID 236999059.
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Ni T, Jiang Q, Ng PC, Shen J, Dou H, Zhu Y, et al. (2023). "Intrinsically disordered CsoS2 acts as a general molecular thread for α-carboxysome shell assembly". bioRxiv. Cold Spring Harbor Laboratory (CSHL). doi:10.1101/2023.06.24.546370. S2CID 259276395.
Sawaya MR, Cannon GC, Heinhorst S, Tanaka S, Williams EB, Yeates TO, Kerfeld CA (March 2006). "The structure of beta-carbonic anhydrase from the carboxysomal shell reveals a distinct subclass with one active site for the price of two". The Journal of Biological Chemistry. 281 (11): 7546–7555. doi:10.1074/jbc.M510464200. PMID 16407248.
Blikstad C, Dugan EJ, Laughlin TG, Turnšek JB, Liu MD, Shoemaker SR, et al. (2023). "Discovery of a carbonic anhydrase-Rubisco complex within the alpha-carboxysome". bioRxiv. Cold Spring Harbor Laboratory (CSHL). doi:10.1101/2021.11.05.467472. S2CID 243836266.
Pulsford, Sacha B.; Outram, Megan A.; Förster, Britta; Rhodes, Timothy; Williams, Simon J.; Badger, Murray R.; Price, G. Dean; Jackson, Colin J.; Long, Benedict M. (2024-05-10). "Cyanobacterial α-carboxysome carbonic anhydrase is allosterically regulated by the Rubisco substrate RuBP". Science Advances. 10 (19). doi:10.1126/sciadv.adk7283. ISSN 2375-2548. PMC 11086599. PMID 38728392.
Menon BB, Dou Z, Heinhorst S, Shively JM, Cannon GC (2008). "Halothiobacillus neapolitanus carboxysomes sequester heterologous and chimeric RubisCO species". PLOS ONE. 3 (10): e3570. Bibcode:2008PLoSO...3.3570M. doi:10.1371/journal.pone.0003570. PMC 2570492. PMID 18974784.
Sommer M, Cai F, Melnicki M, Kerfeld CA (June 2017). "β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints". Journal of Experimental Botany. 68 (14): 3841–3855. doi:10.1093/jxb/erx115. PMC 5853843. PMID 28419380.
Long BM, Badger MR, Whitney SM, Price GD (October 2007). "Analysis of carboxysomes from Synechococcus PCC7942 reveals multiple Rubisco complexes with carboxysomal proteins CcmM and CcaA". The Journal of Biological Chemistry. 282 (40): 29323–29335. doi:10.1074/jbc.M703896200. PMID 17675289.
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handle.net

hdl.handle.net

Schmid MF, Paredes AM, Khant HA, Soyer F, Aldrich HC, Chiu W, Shively JM (December 2006). "Structure of Halothiobacillus neapolitanus carboxysomes by cryo-electron tomography". Journal of Molecular Biology. 364 (3): 526–535. doi:10.1016/j.jmb.2006.09.024. hdl:11147/2128. PMC 1839851. PMID 17028023.
Klein MG, Zwart P, Bagby SC, Cai F, Chisholm SW, Heinhorst S, et al. (September 2009). "Identification and structural analysis of a novel carboxysome shell protein with implications for metabolite transport". Journal of Molecular Biology. 392 (2): 319–333. doi:10.1016/j.jmb.2009.03.056. hdl:1721.1/61355. PMID 19328811. S2CID 42771660.
Wang H, Yan X, Aigner H, Bracher A, Nguyen ND, Hee WY, et al. (February 2019). "Rubisco condensate formation by CcmM in β-carboxysome biogenesis". Nature. 566 (7742): 131–135. Bibcode:2019Natur.566..131W. doi:10.1038/s41586-019-0880-5. hdl:1885/173112. PMID 30675061. S2CID 256770108.
Price GD, Pengelly JJ, Forster B, Du J, Whitney SM, von Caemmerer S, et al. (January 2013). "The cyanobacterial CCM as a source of genes for improving photosynthetic CO2 fixation in crop species". Journal of Experimental Botany. 64 (3): 753–768. doi:10.1093/jxb/ers257. hdl:1885/53387. PMID 23028015.
Rae BD, Long BM, Förster B, Nguyen ND, Velanis CN, Atkinson N, et al. (June 2017). "Progress and challenges of engineering a biophysical CO2-concentrating mechanism into higher plants". Journal of Experimental Botany. 68 (14): 3717–3737. doi:10.1093/jxb/erx133. hdl:20.500.11820/42c5bfb2-691e-4a61-91b1-8efffbe31383. PMID 28444330..

harvard.edu

ui.adsabs.harvard.edu

Cai F, Menon BB, Cannon GC, Curry KJ, Shively JM, Heinhorst S (October 2009). "The pentameric vertex proteins are necessary for the icosahedral carboxysome shell to function as a CO2 leakage barrier". PLOS ONE. 4 (10): e7521. Bibcode:2009PLoSO...4.7521C. doi:10.1371/journal.pone.0007521. PMC 2760150. PMID 19844578.
Mangan NM, Flamholz A, Hood RD, Milo R, Savage DF (September 2016). "pH determines the energetic efficiency of the cyanobacterial CO2 concentrating mechanism". Proceedings of the National Academy of Sciences of the United States of America. 113 (36): E5354 – E5362. Bibcode:2016PNAS..113E5354M. doi:10.1073/pnas.1525145113. PMC 5018799. PMID 27551079.
Axen SD, Erbilgin O, Kerfeld CA (October 2014). "A taxonomy of bacterial microcompartment loci constructed by a novel scoring method". PLOS Computational Biology. 10 (10): e1003898. Bibcode:2014PLSCB..10E3898A. doi:10.1371/journal.pcbi.1003898. PMC 4207490. PMID 25340524.
Shively JM, Ball F, Brown DH, Saunders RE (November 1973). "Functional organelles in prokaryotes: polyhedral inclusions (carboxysomes) of Thiobacillus neapolitanus". Science. 182 (4112): 584–586. Bibcode:1973Sci...182..584S. doi:10.1126/science.182.4112.584. PMID 4355679. S2CID 10097616.
Metskas LA, Ortega D, Oltrogge LM, Blikstad C, Lovejoy DR, Laughlin TG, et al. (August 2022). "Rubisco forms a lattice inside alpha-carboxysomes". Nature Communications. 13 (1): 4863. Bibcode:2022NatCo..13.4863M. doi:10.1038/s41467-022-32584-7. PMC 9388693. PMID 35982043.
Kerfeld CA, Sawaya MR, Tanaka S, Nguyen CV, Phillips M, Beeby M, Yeates TO (August 2005). "Protein structures forming the shell of primitive bacterial organelles". Science. 309 (5736): 936–938. Bibcode:2005Sci...309..936K. CiteSeerX 10.1.1.1026.896. doi:10.1126/science.1113397. PMID 16081736. S2CID 24561197.
Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, Yeates TO (February 2008). "Atomic-level models of the bacterial carboxysome shell". Science. 319 (5866): 1083–1086. Bibcode:2008Sci...319.1083T. doi:10.1126/science.1151458. PMID 18292340. S2CID 5734731.
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Cannon GC, Shively JM (1983). "Characterization of a homogenous preparation of carboxysomes from Thiobacillus neapolitanus". Archives of Microbiology. 134 (1): 52–59. doi:10.1007/BF00429407. ISSN 0302-8933. S2CID 22329896.
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