Channelrhodopsin (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Channelrhodopsin" in English language version.

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131nih.gov

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78doi.org

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47harvard.edu

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17semanticscholar.org

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2worldcat.org

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2psu.edu

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1hal.science

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bbc.com (Global: 20^th place; English: 30^th place)

Gallagher J (24 May 2021). "Algae proteins partially restore man's sight". BBC News.

doi.org (Global: 2^nd place; English: 2^nd place)

Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, et al. (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
Sineshchekov OA, Jung KH, Spudich JL (June 2002). "Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii". Proceedings of the National Academy of Sciences of the United States of America. 99 (13): 8689–8694. doi:10.1073/pnas.122243399. PMC 124360. PMID 12060707.
Foster KW, Smyth RD (December 1980). "Light Antennas in phototactic algae". Microbiological Reviews. 44 (4): 572–630. Bibcode:1980MbRev..44..572F. doi:10.1128/mr.44.4.572-630.1980. PMC 373196. PMID 7010112.
Foster KW, Saranak J, Patel N, Zarilli G, Okabe M, Kline T, et al. (October 1984). "A rhodopsin is the functional photoreceptor for phototaxis in the unicellular eukaryote Chlamydomonas". Nature. 311 (5988): 756–759. Bibcode:1984Natur.311..756F. doi:10.1038/311756a0. PMID 6493336. S2CID 4263301.
Litvin FF, Sineshchekov OA, Sineshchekov VA (February 1978). "Photoreceptor electric potential in the phototaxis of the alga Haematococcus pluvialis". Nature. 271 (5644): 476–478. Bibcode:1978Natur.271..476L. doi:10.1038/271476a0. PMID 628427. S2CID 4165365.
Harz H, Hegemann P (June 1991). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
Holland EM, Braun FJ, Nonnengässer C, Harz H, Hegemann P (February 1996). "The nature of rhodopsin-triggered photocurrents in Chlamydomonas. I. Kinetics and influence of divalent ions". Biophysical Journal. 70 (2): 924–931. Bibcode:1996BpJ....70..924H. doi:10.1016/S0006-3495(96)79635-2. PMC 1224992. PMID 8789109.
Braun FJ, Hegemann P (March 1999). "Two light-activated conductances in the eye of the green alga Volvox carteri". Biophysical Journal. 76 (3): 1668–1678. Bibcode:1999BpJ....76.1668B. doi:10.1016/S0006-3495(99)77326-1. PMC 1300143. PMID 10049347.
Suzuki T, Yamasaki K, Fujita S, Oda K, Iseki M, Yoshida K, et al. (February 2003). "Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization". Biochemical and Biophysical Research Communications. 301 (3): 711–717. Bibcode:2003BBRC..301..711S. doi:10.1016/S0006-291X(02)03079-6. PMID 12565839.
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
Berthold P, Tsunoda SP, Ernst OP, Mages W, Gradmann D, Hegemann P (June 2008). "Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization". The Plant Cell. 20 (6): 1665–1677. Bibcode:2008PlanC..20.1665B. doi:10.1105/tpc.108.057919. PMC 2483371. PMID 18552201.
Kato HE, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, Hirata K, et al. (January 2012). "Crystal structure of the channelrhodopsin light-gated cation channel". Nature. 482 (7385): 369–374. Bibcode:2012Natur.482..369K. doi:10.1038/nature10870. PMC 4160518. PMID 22266941.
Bamann C, Kirsch T, Nagel G, Bamberg E (January 2008). "Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function". Journal of Molecular Biology. 375 (3): 686–694. doi:10.1016/j.jmb.2007.10.072. PMID 18037436.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Govorunova EG, Gou Y, Sineshchekov OA, Li H, Lu X, Wang Y, et al. (July 2022). "Kalium channelrhodopsins are natural light-gated potassium channels that mediate optogenetic inhibition". Nature Neuroscience. 25 (7): 967–974. doi:10.1038/s41593-022-01094-6. PMC 9854242. PMID 35726059. S2CID 249886382.
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, et al. (September 2018). "Crystal structure of the natural anion-conducting channelrhodopsin GtACR1". Nature. 561 (7723): 343–348. Bibcode:2018Natur.561..343K. doi:10.1038/s41586-018-0511-6. PMC 6340299. PMID 30158696.
Tajima S, Kim YS, Fukuda M, Byrne EF, Wang PY, Paggi JM, et al. (2023). "Structural basis for ion selectivity in potassium-selective channelrhodopsins". Cell. 186 (20): 4325–4344.e26. bioRxiv 10.1101/2022.10.30.514430. doi:10.1016/j.cell.2023.08.009. PMC 7615185. PMID 37652010.
Eria-Oliveira AS, Folacci M, Chassot AA, Fedou S, Thézé N, Zabelskii D, et al. (2024-01-02). "Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins". Nature Communications. 15 (1): 65. Bibcode:2024NatCo..15...65E. doi:10.1038/s41467-023-44548-6. ISSN 2041-1723. PMC 10761956. PMID 38167346.
Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690.
Lima SQ, Miesenböck G (April 2005). "Remote control of behavior through genetically targeted photostimulation of neurons". Cell. 121 (1): 141–152. doi:10.1016/j.cell.2005.02.004. PMID 15820685.
Zhang F, Wang LP, Boyden ES, Deisseroth K (October 2006). "Channelrhodopsin-2 and optical control of excitable cells". Nature Methods. 3 (10): 785–792. doi:10.1038/nmeth936. PMID 16990810. S2CID 15096826.
Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
Lin JY, Lin MZ, Steinbach P, Tsien RY (March 2009). "Characterization of engineered channelrhodopsin variants with improved properties and kinetics". Biophysical Journal. 96 (5): 1803–1814. Bibcode:2009BpJ....96.1803L. doi:10.1016/j.bpj.2008.11.034. PMC 2717302. PMID 19254539.
Gunaydin LA, Yizhar O, Berndt A, Sohal VS, Deisseroth K, Hegemann P (March 2010). "Ultrafast optogenetic control". Nature Neuroscience. 13 (3): 387–392. doi:10.1038/nn.2495. PMID 20081849. S2CID 7457755.
Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, Yizhar O, et al. (June 2008). "Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri". Nature Neuroscience. 11 (6): 631–633. doi:10.1038/nn.2120. PMC 2692303. PMID 18432196.
Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ, et al. (July 2011). "Neocortical excitation/inhibition balance in information processing and social dysfunction". Nature. 477 (7363): 171–178. Bibcode:2011Natur.477..171Y. doi:10.1038/nature10360. PMC 4155501. PMID 21796121.
Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, et al. (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, et al. (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
Lee JH, Durand R, Gradinaru V, Zhang F, Goshen I, Kim DS, et al. (June 2010). "Global and local fMRI signals driven by neurons defined optogenetically by type and wiring". Nature. 465 (7299): 788–792. Bibcode:2010Natur.465..788L. doi:10.1038/nature09108. PMC 3177305. PMID 20473285.
Zhang YP, Oertner TG (February 2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. PMID 17195846. S2CID 17721823.
Petreanu L, Huber D, Sobczyk A, Svoboda K (May 2007). "Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections". Nature Neuroscience. 10 (5): 663–668. doi:10.1038/nn1891. PMID 17435752. S2CID 14275254.
Kätzel D, Zemelman BV, Buetfering C, Wölfel M, Miesenböck G (January 2011). "The columnar and laminar organization of inhibitory connections to neocortical excitatory cells". Nature Neuroscience. 14 (1): 100–107. doi:10.1038/nn.2687. PMC 3011044. PMID 21076426.
Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, et al. (May 2007). "High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice". Proceedings of the National Academy of Sciences of the United States of America. 104 (19): 8143–8148. Bibcode:2007PNAS..104.8143W. doi:10.1073/pnas.0700384104. PMC 1876585. PMID 17483470.
Mohanty SK, Reinscheid RK, Liu X, Okamura N, Krasieva TB, Berns MW (October 2008). "In-depth activation of channelrhodopsin 2-sensitized excitable cells with high spatial resolution using two-photon excitation with a near-infrared laser microbeam". Biophysical Journal. 95 (8): 3916–3926. Bibcode:2008BpJ....95.3916M. doi:10.1529/biophysj.108.130187. PMC 2553121. PMID 18621808.
Rickgauer JP, Tank DW (September 2009). "Two-photon excitation of channelrhodopsin-2 at saturation". Proceedings of the National Academy of Sciences of the United States of America. 106 (35): 15025–15030. Bibcode:2009PNAS..10615025R. doi:10.1073/pnas.0907084106. PMC 2736443. PMID 19706471.
Andrasfalvy BK, Zemelman BV, Tang J, Vaziri A (June 2010). "Two-photon single-cell optogenetic control of neuronal activity by sculpted light". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11981–11986. Bibcode:2010PNAS..10711981A. doi:10.1073/pnas.1006620107. PMC 2900666. PMID 20543137.
Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
Schoenenberger P, Gerosa D, Oertner TG (December 2009). "Temporal control of immediate early gene induction by light". PLOS ONE. 4 (12) e8185. Bibcode:2009PLoSO...4.8185S. doi:10.1371/journal.pone.0008185. PMC 2780714. PMID 19997631.
Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, et al. (May 2011). "High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7595–7600. Bibcode:2011PNAS..108.7595B. doi:10.1073/pnas.1017210108. PMC 3088623. PMID 21504945.
Dawydow A, Gueta R, Ljaschenko D, Ullrich S, Hermann M, Ehmann N, et al. (September 2014). "Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications". Proceedings of the National Academy of Sciences of the United States of America. 111 (38): 13972–13977. Bibcode:2014PNAS..11113972D. doi:10.1073/pnas.1408269111. PMC 4183338. PMID 25201989.
Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Hooks BM, Lin JY, Guo C, Svoboda K (March 2015). "Dual-channel circuit mapping reveals sensorimotor convergence in the primary motor cortex". The Journal of Neuroscience. 35 (10): 4418–4426. doi:10.1523/JNEUROSCI.3741-14.2015. PMC 4355205. PMID 25762684.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Wiegert JS, Oertner TG, et al. (December 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, et al. (August 2014). "All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins". Nature Methods. 11 (8): 825–833. doi:10.1038/nmeth.3000. PMC 4117813. PMID 24952910.
Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, et al. (March 2016). "Sensitive red protein calcium indicators for imaging neural activity". eLife. 5 e12727. doi:10.7554/eLife.12727. PMC 4846379. PMID 27011354.
Afshar Saber W, Gasparoli FM, Dirks MG, Gunn-Moore FJ, Antkowiak M (2018). "All-Optical Assay to Study Biological Neural Networks". Frontiers in Neuroscience. 12 451. doi:10.3389/fnins.2018.00451. PMC 6041400. PMID 30026684.
Kleinlogel S, Feldbauer K, Dempski RE, Fotis H, Wood PG, Bamann C, et al. (April 2011). "Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh". Nature Neuroscience. 14 (4): 513–518. doi:10.1038/nn.2776. PMID 21399632. S2CID 5907240.
Fernandez Lahore RG, Pampaloni NP, Peter E, Heim MM, Tillert L, Vierock J, et al. (December 2022). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1) 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. PMC 9772239. PMID 36543773.
Govorunova EG, Gou Y, Sineshchekov OA, Li H, Wang Y, Brown LS, et al. (2021-09-17). "Kalium rhodopsins: Natural light-gated potassium channels". bioRxiv 10.1101/2021.09.17.460684.
Vierock J, Peter E, Grimm C, Rozenberg A, Chen IW, Tillert L, et al. (December 2022). "WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells". Science Advances. 8 (49) eadd7729. Bibcode:2022SciA....8D7729V. doi:10.1126/sciadv.add7729. PMC 9733931. PMID 36383037.
Wietek J, Wiegert JS, Adeishvili N, Schneider F, Watanabe H, Tsunoda SP, et al. (April 2014). "Conversion of channelrhodopsin into a light-gated chloride channel". Science. 344 (6182): 409–412. Bibcode:2014Sci...344..409W. doi:10.1126/science.1249375. PMID 24674867. S2CID 206554245.
Wietek J, Beltramo R, Scanziani M, Hegemann P, Oertner TG, Wiegert JS (October 2015). "An improved chloride-conducting channelrhodopsin for light-induced inhibition of neuronal activity in vivo". Scientific Reports. 5 14807. Bibcode:2015NatSR...514807W. doi:10.1038/srep14807. PMC 4595828. PMID 26443033.
Berndt A, Lee SY, Wietek J, Ramakrishnan C, Steinberg EE, Rashid AJ, et al. (January 2016). "Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity". Proceedings of the National Academy of Sciences of the United States of America. 113 (4): 822–829. Bibcode:2016PNAS..113..822B. doi:10.1073/pnas.1523341113. PMC 4743797. PMID 26699459.
Fernandez Lahore RG, Pampaloni NP, Schiewer E, Heim MM, Tillert L, Vierock J, et al. (2022-12-21). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1): 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. ISSN 2041-1723. PMC 9772239. PMID 36543773.
Douglass AD, Kraves S, Deisseroth K, Schier AF, Engert F (August 2008). "Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons". Current Biology. 18 (15): 1133–1137. Bibcode:2008CBio...18.1133D. doi:10.1016/j.cub.2008.06.077. PMC 2891506. PMID 18682213.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, et al. (January 2008). "Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice". Nature. 451 (7174): 61–64. Bibcode:2008Natur.451...61H. doi:10.1038/nature06445. PMC 3425380. PMID 18094685.
Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. PMC 1808431. PMID 17375185.
Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Vierock J, Rodriguez-Rozada S, Dieter A, Pieper F, Sims R, Tenedini F, et al. (July 2021). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1) 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. PMC 8313717. PMID 34312384.
Zhang YP, Holbro N, Oertner TG (August 2008). "Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII". Proceedings of the National Academy of Sciences of the United States of America. 105 (33): 12039–12044. Bibcode:2008PNAS..10512039Z. doi:10.1073/pnas.0802940105. PMC 2575337. PMID 18697934.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Simon Wiegert J, Oertner TG, et al. (February 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Xu Z, Ziye X, Craig H, Silvia F (Dec 2013). "Spike-based indirect training of a spiking neural network-controlled virtual insect". 52nd IEEE Conference on Decision and Control. IEEE Decision and Control. pp. 6798–6805. CiteSeerX 10.1.1.671.6351. doi:10.1109/CDC.2013.6760966. ISBN 978-1-4673-5717-3. S2CID 13992150.
Petreanu L, Mao T, Sternson SM, Svoboda K (February 2009). "The subcellular organization of neocortical excitatory connections". Nature. 457 (7233): 1142–1145. Bibcode:2009Natur.457.1142P. doi:10.1038/nature07709. PMC 2745650. PMID 19151697.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, Busskamp V, et al. (June 2008). "Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration". Nature Neuroscience. 11 (6): 667–675. doi:10.1038/nn.2117. PMID 18432197. S2CID 6798764.
Sahel JA, Boulanger-Scemama E, Pagot C, Arleo A, Galluppi F, Martel JN, et al. (July 2021). "Partial recovery of visual function in a blind patient after optogenetic therapy". Nature Medicine. 27 (7): 1223–1229. doi:10.1038/s41591-021-01351-4. PMID 34031601.
Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.

hal.science (Global: low place; English: low place)

Kleinlogel S, Feldbauer K, Dempski RE, Fotis H, Wood PG, Bamann C, et al. (April 2011). "Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh". Nature Neuroscience. 14 (4): 513–518. doi:10.1038/nn.2776. PMID 21399632. S2CID 5907240.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, et al. (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
Foster KW, Smyth RD (December 1980). "Light Antennas in phototactic algae". Microbiological Reviews. 44 (4): 572–630. Bibcode:1980MbRev..44..572F. doi:10.1128/mr.44.4.572-630.1980. PMC 373196. PMID 7010112.
Foster KW, Saranak J, Patel N, Zarilli G, Okabe M, Kline T, et al. (October 1984). "A rhodopsin is the functional photoreceptor for phototaxis in the unicellular eukaryote Chlamydomonas". Nature. 311 (5988): 756–759. Bibcode:1984Natur.311..756F. doi:10.1038/311756a0. PMID 6493336. S2CID 4263301.
Litvin FF, Sineshchekov OA, Sineshchekov VA (February 1978). "Photoreceptor electric potential in the phototaxis of the alga Haematococcus pluvialis". Nature. 271 (5644): 476–478. Bibcode:1978Natur.271..476L. doi:10.1038/271476a0. PMID 628427. S2CID 4165365.
Harz H, Hegemann P (June 1991). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
Holland EM, Braun FJ, Nonnengässer C, Harz H, Hegemann P (February 1996). "The nature of rhodopsin-triggered photocurrents in Chlamydomonas. I. Kinetics and influence of divalent ions". Biophysical Journal. 70 (2): 924–931. Bibcode:1996BpJ....70..924H. doi:10.1016/S0006-3495(96)79635-2. PMC 1224992. PMID 8789109.
Braun FJ, Hegemann P (March 1999). "Two light-activated conductances in the eye of the green alga Volvox carteri". Biophysical Journal. 76 (3): 1668–1678. Bibcode:1999BpJ....76.1668B. doi:10.1016/S0006-3495(99)77326-1. PMC 1300143. PMID 10049347.
Suzuki T, Yamasaki K, Fujita S, Oda K, Iseki M, Yoshida K, et al. (February 2003). "Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization". Biochemical and Biophysical Research Communications. 301 (3): 711–717. Bibcode:2003BBRC..301..711S. doi:10.1016/S0006-291X(02)03079-6. PMID 12565839.
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
Berthold P, Tsunoda SP, Ernst OP, Mages W, Gradmann D, Hegemann P (June 2008). "Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization". The Plant Cell. 20 (6): 1665–1677. Bibcode:2008PlanC..20.1665B. doi:10.1105/tpc.108.057919. PMC 2483371. PMID 18552201.
Kato HE, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, Hirata K, et al. (January 2012). "Crystal structure of the channelrhodopsin light-gated cation channel". Nature. 482 (7385): 369–374. Bibcode:2012Natur.482..369K. doi:10.1038/nature10870. PMC 4160518. PMID 22266941.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, et al. (September 2018). "Crystal structure of the natural anion-conducting channelrhodopsin GtACR1". Nature. 561 (7723): 343–348. Bibcode:2018Natur.561..343K. doi:10.1038/s41586-018-0511-6. PMC 6340299. PMID 30158696.
Eria-Oliveira AS, Folacci M, Chassot AA, Fedou S, Thézé N, Zabelskii D, et al. (2024-01-02). "Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins". Nature Communications. 15 (1): 65. Bibcode:2024NatCo..15...65E. doi:10.1038/s41467-023-44548-6. ISSN 2041-1723. PMC 10761956. PMID 38167346.
Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690.
Lin JY, Lin MZ, Steinbach P, Tsien RY (March 2009). "Characterization of engineered channelrhodopsin variants with improved properties and kinetics". Biophysical Journal. 96 (5): 1803–1814. Bibcode:2009BpJ....96.1803L. doi:10.1016/j.bpj.2008.11.034. PMC 2717302. PMID 19254539.
Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ, et al. (July 2011). "Neocortical excitation/inhibition balance in information processing and social dysfunction". Nature. 477 (7363): 171–178. Bibcode:2011Natur.477..171Y. doi:10.1038/nature10360. PMC 4155501. PMID 21796121.
Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, et al. (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, et al. (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
Lee JH, Durand R, Gradinaru V, Zhang F, Goshen I, Kim DS, et al. (June 2010). "Global and local fMRI signals driven by neurons defined optogenetically by type and wiring". Nature. 465 (7299): 788–792. Bibcode:2010Natur.465..788L. doi:10.1038/nature09108. PMC 3177305. PMID 20473285.
Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, et al. (May 2007). "High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice". Proceedings of the National Academy of Sciences of the United States of America. 104 (19): 8143–8148. Bibcode:2007PNAS..104.8143W. doi:10.1073/pnas.0700384104. PMC 1876585. PMID 17483470.
Mohanty SK, Reinscheid RK, Liu X, Okamura N, Krasieva TB, Berns MW (October 2008). "In-depth activation of channelrhodopsin 2-sensitized excitable cells with high spatial resolution using two-photon excitation with a near-infrared laser microbeam". Biophysical Journal. 95 (8): 3916–3926. Bibcode:2008BpJ....95.3916M. doi:10.1529/biophysj.108.130187. PMC 2553121. PMID 18621808.
Rickgauer JP, Tank DW (September 2009). "Two-photon excitation of channelrhodopsin-2 at saturation". Proceedings of the National Academy of Sciences of the United States of America. 106 (35): 15025–15030. Bibcode:2009PNAS..10615025R. doi:10.1073/pnas.0907084106. PMC 2736443. PMID 19706471.
Andrasfalvy BK, Zemelman BV, Tang J, Vaziri A (June 2010). "Two-photon single-cell optogenetic control of neuronal activity by sculpted light". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11981–11986. Bibcode:2010PNAS..10711981A. doi:10.1073/pnas.1006620107. PMC 2900666. PMID 20543137.
Schoenenberger P, Gerosa D, Oertner TG (December 2009). "Temporal control of immediate early gene induction by light". PLOS ONE. 4 (12) e8185. Bibcode:2009PLoSO...4.8185S. doi:10.1371/journal.pone.0008185. PMC 2780714. PMID 19997631.
Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, et al. (May 2011). "High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7595–7600. Bibcode:2011PNAS..108.7595B. doi:10.1073/pnas.1017210108. PMC 3088623. PMID 21504945.
Dawydow A, Gueta R, Ljaschenko D, Ullrich S, Hermann M, Ehmann N, et al. (September 2014). "Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications". Proceedings of the National Academy of Sciences of the United States of America. 111 (38): 13972–13977. Bibcode:2014PNAS..11113972D. doi:10.1073/pnas.1408269111. PMC 4183338. PMID 25201989.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Fernandez Lahore RG, Pampaloni NP, Peter E, Heim MM, Tillert L, Vierock J, et al. (December 2022). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1) 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. PMC 9772239. PMID 36543773.
Vierock J, Peter E, Grimm C, Rozenberg A, Chen IW, Tillert L, et al. (December 2022). "WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells". Science Advances. 8 (49) eadd7729. Bibcode:2022SciA....8D7729V. doi:10.1126/sciadv.add7729. PMC 9733931. PMID 36383037.
Wietek J, Wiegert JS, Adeishvili N, Schneider F, Watanabe H, Tsunoda SP, et al. (April 2014). "Conversion of channelrhodopsin into a light-gated chloride channel". Science. 344 (6182): 409–412. Bibcode:2014Sci...344..409W. doi:10.1126/science.1249375. PMID 24674867. S2CID 206554245.
Wietek J, Beltramo R, Scanziani M, Hegemann P, Oertner TG, Wiegert JS (October 2015). "An improved chloride-conducting channelrhodopsin for light-induced inhibition of neuronal activity in vivo". Scientific Reports. 5 14807. Bibcode:2015NatSR...514807W. doi:10.1038/srep14807. PMC 4595828. PMID 26443033.
Berndt A, Lee SY, Wietek J, Ramakrishnan C, Steinberg EE, Rashid AJ, et al. (January 2016). "Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity". Proceedings of the National Academy of Sciences of the United States of America. 113 (4): 822–829. Bibcode:2016PNAS..113..822B. doi:10.1073/pnas.1523341113. PMC 4743797. PMID 26699459.
Fernandez Lahore RG, Pampaloni NP, Schiewer E, Heim MM, Tillert L, Vierock J, et al. (2022-12-21). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1): 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. ISSN 2041-1723. PMC 9772239. PMID 36543773.
Douglass AD, Kraves S, Deisseroth K, Schier AF, Engert F (August 2008). "Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons". Current Biology. 18 (15): 1133–1137. Bibcode:2008CBio...18.1133D. doi:10.1016/j.cub.2008.06.077. PMC 2891506. PMID 18682213.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, et al. (January 2008). "Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice". Nature. 451 (7174): 61–64. Bibcode:2008Natur.451...61H. doi:10.1038/nature06445. PMC 3425380. PMID 18094685.
Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. PMC 1808431. PMID 17375185.
Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Vierock J, Rodriguez-Rozada S, Dieter A, Pieper F, Sims R, Tenedini F, et al. (July 2021). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1) 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. PMC 8313717. PMID 34312384.
Zhang YP, Holbro N, Oertner TG (August 2008). "Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII". Proceedings of the National Academy of Sciences of the United States of America. 105 (33): 12039–12044. Bibcode:2008PNAS..10512039Z. doi:10.1073/pnas.0802940105. PMC 2575337. PMID 18697934.
Petreanu L, Mao T, Sternson SM, Svoboda K (February 2009). "The subcellular organization of neocortical excitatory connections". Nature. 457 (7233): 1142–1145. Bibcode:2009Natur.457.1142P. doi:10.1038/nature07709. PMC 2745650. PMID 19151697.
Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, et al. (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
Sineshchekov OA, Jung KH, Spudich JL (June 2002). "Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii". Proceedings of the National Academy of Sciences of the United States of America. 99 (13): 8689–8694. doi:10.1073/pnas.122243399. PMC 124360. PMID 12060707.
Foster KW, Smyth RD (December 1980). "Light Antennas in phototactic algae". Microbiological Reviews. 44 (4): 572–630. Bibcode:1980MbRev..44..572F. doi:10.1128/mr.44.4.572-630.1980. PMC 373196. PMID 7010112.
Foster KW, Saranak J, Patel N, Zarilli G, Okabe M, Kline T, et al. (October 1984). "A rhodopsin is the functional photoreceptor for phototaxis in the unicellular eukaryote Chlamydomonas". Nature. 311 (5988): 756–759. Bibcode:1984Natur.311..756F. doi:10.1038/311756a0. PMID 6493336. S2CID 4263301.
Litvin FF, Sineshchekov OA, Sineshchekov VA (February 1978). "Photoreceptor electric potential in the phototaxis of the alga Haematococcus pluvialis". Nature. 271 (5644): 476–478. Bibcode:1978Natur.271..476L. doi:10.1038/271476a0. PMID 628427. S2CID 4165365.
Holland EM, Braun FJ, Nonnengässer C, Harz H, Hegemann P (February 1996). "The nature of rhodopsin-triggered photocurrents in Chlamydomonas. I. Kinetics and influence of divalent ions". Biophysical Journal. 70 (2): 924–931. Bibcode:1996BpJ....70..924H. doi:10.1016/S0006-3495(96)79635-2. PMC 1224992. PMID 8789109.
Braun FJ, Hegemann P (March 1999). "Two light-activated conductances in the eye of the green alga Volvox carteri". Biophysical Journal. 76 (3): 1668–1678. Bibcode:1999BpJ....76.1668B. doi:10.1016/S0006-3495(99)77326-1. PMC 1300143. PMID 10049347.
Suzuki T, Yamasaki K, Fujita S, Oda K, Iseki M, Yoshida K, et al. (February 2003). "Archaeal-type rhodopsins in Chlamydomonas: model structure and intracellular localization". Biochemical and Biophysical Research Communications. 301 (3): 711–717. Bibcode:2003BBRC..301..711S. doi:10.1016/S0006-291X(02)03079-6. PMID 12565839.
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
Berthold P, Tsunoda SP, Ernst OP, Mages W, Gradmann D, Hegemann P (June 2008). "Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization". The Plant Cell. 20 (6): 1665–1677. Bibcode:2008PlanC..20.1665B. doi:10.1105/tpc.108.057919. PMC 2483371. PMID 18552201.
Kato HE, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, Hirata K, et al. (January 2012). "Crystal structure of the channelrhodopsin light-gated cation channel". Nature. 482 (7385): 369–374. Bibcode:2012Natur.482..369K. doi:10.1038/nature10870. PMC 4160518. PMID 22266941.
Bamann C, Kirsch T, Nagel G, Bamberg E (January 2008). "Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function". Journal of Molecular Biology. 375 (3): 686–694. doi:10.1016/j.jmb.2007.10.072. PMID 18037436.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Govorunova EG, Gou Y, Sineshchekov OA, Li H, Lu X, Wang Y, et al. (July 2022). "Kalium channelrhodopsins are natural light-gated potassium channels that mediate optogenetic inhibition". Nature Neuroscience. 25 (7): 967–974. doi:10.1038/s41593-022-01094-6. PMC 9854242. PMID 35726059. S2CID 249886382.
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, et al. (September 2018). "Crystal structure of the natural anion-conducting channelrhodopsin GtACR1". Nature. 561 (7723): 343–348. Bibcode:2018Natur.561..343K. doi:10.1038/s41586-018-0511-6. PMC 6340299. PMID 30158696.
Tajima S, Kim YS, Fukuda M, Byrne EF, Wang PY, Paggi JM, et al. (2023). "Structural basis for ion selectivity in potassium-selective channelrhodopsins". Cell. 186 (20): 4325–4344.e26. bioRxiv 10.1101/2022.10.30.514430. doi:10.1016/j.cell.2023.08.009. PMC 7615185. PMID 37652010.
Eria-Oliveira AS, Folacci M, Chassot AA, Fedou S, Thézé N, Zabelskii D, et al. (2024-01-02). "Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins". Nature Communications. 15 (1): 65. Bibcode:2024NatCo..15...65E. doi:10.1038/s41467-023-44548-6. ISSN 2041-1723. PMC 10761956. PMID 38167346.
Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
Nagel G, Brauner M, Liewald JF, Adeishvili N, Bamberg E, Gottschalk A (December 2005). "Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses". Current Biology. 15 (24): 2279–2284. Bibcode:2005CBio...15.2279N. doi:10.1016/j.cub.2005.11.032. PMID 16360690.
Lima SQ, Miesenböck G (April 2005). "Remote control of behavior through genetically targeted photostimulation of neurons". Cell. 121 (1): 141–152. doi:10.1016/j.cell.2005.02.004. PMID 15820685.
Zhang F, Wang LP, Boyden ES, Deisseroth K (October 2006). "Channelrhodopsin-2 and optical control of excitable cells". Nature Methods. 3 (10): 785–792. doi:10.1038/nmeth936. PMID 16990810. S2CID 15096826.
Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
Lin JY, Lin MZ, Steinbach P, Tsien RY (March 2009). "Characterization of engineered channelrhodopsin variants with improved properties and kinetics". Biophysical Journal. 96 (5): 1803–1814. Bibcode:2009BpJ....96.1803L. doi:10.1016/j.bpj.2008.11.034. PMC 2717302. PMID 19254539.
Gunaydin LA, Yizhar O, Berndt A, Sohal VS, Deisseroth K, Hegemann P (March 2010). "Ultrafast optogenetic control". Nature Neuroscience. 13 (3): 387–392. doi:10.1038/nn.2495. PMID 20081849. S2CID 7457755.
Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, Yizhar O, et al. (June 2008). "Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri". Nature Neuroscience. 11 (6): 631–633. doi:10.1038/nn.2120. PMC 2692303. PMID 18432196.
Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ, et al. (July 2011). "Neocortical excitation/inhibition balance in information processing and social dysfunction". Nature. 477 (7363): 171–178. Bibcode:2011Natur.477..171Y. doi:10.1038/nature10360. PMC 4155501. PMID 21796121.
Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, et al. (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, et al. (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
Lee JH, Durand R, Gradinaru V, Zhang F, Goshen I, Kim DS, et al. (June 2010). "Global and local fMRI signals driven by neurons defined optogenetically by type and wiring". Nature. 465 (7299): 788–792. Bibcode:2010Natur.465..788L. doi:10.1038/nature09108. PMC 3177305. PMID 20473285.
Zhang YP, Oertner TG (February 2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. PMID 17195846. S2CID 17721823.
Petreanu L, Huber D, Sobczyk A, Svoboda K (May 2007). "Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections". Nature Neuroscience. 10 (5): 663–668. doi:10.1038/nn1891. PMID 17435752. S2CID 14275254.
Kätzel D, Zemelman BV, Buetfering C, Wölfel M, Miesenböck G (January 2011). "The columnar and laminar organization of inhibitory connections to neocortical excitatory cells". Nature Neuroscience. 14 (1): 100–107. doi:10.1038/nn.2687. PMC 3011044. PMID 21076426.
Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, et al. (May 2007). "High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice". Proceedings of the National Academy of Sciences of the United States of America. 104 (19): 8143–8148. Bibcode:2007PNAS..104.8143W. doi:10.1073/pnas.0700384104. PMC 1876585. PMID 17483470.
Mohanty SK, Reinscheid RK, Liu X, Okamura N, Krasieva TB, Berns MW (October 2008). "In-depth activation of channelrhodopsin 2-sensitized excitable cells with high spatial resolution using two-photon excitation with a near-infrared laser microbeam". Biophysical Journal. 95 (8): 3916–3926. Bibcode:2008BpJ....95.3916M. doi:10.1529/biophysj.108.130187. PMC 2553121. PMID 18621808.
Rickgauer JP, Tank DW (September 2009). "Two-photon excitation of channelrhodopsin-2 at saturation". Proceedings of the National Academy of Sciences of the United States of America. 106 (35): 15025–15030. Bibcode:2009PNAS..10615025R. doi:10.1073/pnas.0907084106. PMC 2736443. PMID 19706471.
Andrasfalvy BK, Zemelman BV, Tang J, Vaziri A (June 2010). "Two-photon single-cell optogenetic control of neuronal activity by sculpted light". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11981–11986. Bibcode:2010PNAS..10711981A. doi:10.1073/pnas.1006620107. PMC 2900666. PMID 20543137.
Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
Schoenenberger P, Gerosa D, Oertner TG (December 2009). "Temporal control of immediate early gene induction by light". PLOS ONE. 4 (12) e8185. Bibcode:2009PLoSO...4.8185S. doi:10.1371/journal.pone.0008185. PMC 2780714. PMID 19997631.
Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, et al. (May 2011). "High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7595–7600. Bibcode:2011PNAS..108.7595B. doi:10.1073/pnas.1017210108. PMC 3088623. PMID 21504945.
Dawydow A, Gueta R, Ljaschenko D, Ullrich S, Hermann M, Ehmann N, et al. (September 2014). "Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications". Proceedings of the National Academy of Sciences of the United States of America. 111 (38): 13972–13977. Bibcode:2014PNAS..11113972D. doi:10.1073/pnas.1408269111. PMC 4183338. PMID 25201989.
Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Hooks BM, Lin JY, Guo C, Svoboda K (March 2015). "Dual-channel circuit mapping reveals sensorimotor convergence in the primary motor cortex". The Journal of Neuroscience. 35 (10): 4418–4426. doi:10.1523/JNEUROSCI.3741-14.2015. PMC 4355205. PMID 25762684.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Wiegert JS, Oertner TG, et al. (December 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, et al. (August 2014). "All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins". Nature Methods. 11 (8): 825–833. doi:10.1038/nmeth.3000. PMC 4117813. PMID 24952910.
Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, et al. (March 2016). "Sensitive red protein calcium indicators for imaging neural activity". eLife. 5 e12727. doi:10.7554/eLife.12727. PMC 4846379. PMID 27011354.
Afshar Saber W, Gasparoli FM, Dirks MG, Gunn-Moore FJ, Antkowiak M (2018). "All-Optical Assay to Study Biological Neural Networks". Frontiers in Neuroscience. 12 451. doi:10.3389/fnins.2018.00451. PMC 6041400. PMID 30026684.
Kleinlogel S, Feldbauer K, Dempski RE, Fotis H, Wood PG, Bamann C, et al. (April 2011). "Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh". Nature Neuroscience. 14 (4): 513–518. doi:10.1038/nn.2776. PMID 21399632. S2CID 5907240.
Fernandez Lahore RG, Pampaloni NP, Peter E, Heim MM, Tillert L, Vierock J, et al. (December 2022). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1) 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. PMC 9772239. PMID 36543773.
Vierock J, Peter E, Grimm C, Rozenberg A, Chen IW, Tillert L, et al. (December 2022). "WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells". Science Advances. 8 (49) eadd7729. Bibcode:2022SciA....8D7729V. doi:10.1126/sciadv.add7729. PMC 9733931. PMID 36383037.
Wietek J, Wiegert JS, Adeishvili N, Schneider F, Watanabe H, Tsunoda SP, et al. (April 2014). "Conversion of channelrhodopsin into a light-gated chloride channel". Science. 344 (6182): 409–412. Bibcode:2014Sci...344..409W. doi:10.1126/science.1249375. PMID 24674867. S2CID 206554245.
Wietek J, Beltramo R, Scanziani M, Hegemann P, Oertner TG, Wiegert JS (October 2015). "An improved chloride-conducting channelrhodopsin for light-induced inhibition of neuronal activity in vivo". Scientific Reports. 5 14807. Bibcode:2015NatSR...514807W. doi:10.1038/srep14807. PMC 4595828. PMID 26443033.
Berndt A, Lee SY, Wietek J, Ramakrishnan C, Steinberg EE, Rashid AJ, et al. (January 2016). "Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity". Proceedings of the National Academy of Sciences of the United States of America. 113 (4): 822–829. Bibcode:2016PNAS..113..822B. doi:10.1073/pnas.1523341113. PMC 4743797. PMID 26699459.
Fernandez Lahore RG, Pampaloni NP, Schiewer E, Heim MM, Tillert L, Vierock J, et al. (2022-12-21). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1): 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. ISSN 2041-1723. PMC 9772239. PMID 36543773.
Douglass AD, Kraves S, Deisseroth K, Schier AF, Engert F (August 2008). "Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons". Current Biology. 18 (15): 1133–1137. Bibcode:2008CBio...18.1133D. doi:10.1016/j.cub.2008.06.077. PMC 2891506. PMID 18682213.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, et al. (January 2008). "Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice". Nature. 451 (7174): 61–64. Bibcode:2008Natur.451...61H. doi:10.1038/nature06445. PMC 3425380. PMID 18094685.
Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. PMC 1808431. PMID 17375185.
Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Vierock J, Rodriguez-Rozada S, Dieter A, Pieper F, Sims R, Tenedini F, et al. (July 2021). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1) 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. PMC 8313717. PMID 34312384.
Zhang YP, Holbro N, Oertner TG (August 2008). "Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII". Proceedings of the National Academy of Sciences of the United States of America. 105 (33): 12039–12044. Bibcode:2008PNAS..10512039Z. doi:10.1073/pnas.0802940105. PMC 2575337. PMID 18697934.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Simon Wiegert J, Oertner TG, et al. (February 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Petreanu L, Mao T, Sternson SM, Svoboda K (February 2009). "The subcellular organization of neocortical excitatory connections". Nature. 457 (7233): 1142–1145. Bibcode:2009Natur.457.1142P. doi:10.1038/nature07709. PMC 2745650. PMID 19151697.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, Busskamp V, et al. (June 2008). "Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration". Nature Neuroscience. 11 (6): 667–675. doi:10.1038/nn.2117. PMID 18432197. S2CID 6798764.
Sahel JA, Boulanger-Scemama E, Pagot C, Arleo A, Galluppi F, Martel JN, et al. (July 2021). "Partial recovery of visual function in a blind patient after optogenetic therapy". Nature Medicine. 27 (7): 1223–1229. doi:10.1038/s41591-021-01351-4. PMID 34031601.
Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.

ncbi.nlm.nih.gov

Sineshchekov OA, Jung KH, Spudich JL (June 2002). "Two rhodopsins mediate phototaxis to low- and high-intensity light in Chlamydomonas reinhardtii". Proceedings of the National Academy of Sciences of the United States of America. 99 (13): 8689–8694. doi:10.1073/pnas.122243399. PMC 124360. PMID 12060707.
Foster KW, Smyth RD (December 1980). "Light Antennas in phototactic algae". Microbiological Reviews. 44 (4): 572–630. Bibcode:1980MbRev..44..572F. doi:10.1128/mr.44.4.572-630.1980. PMC 373196. PMID 7010112.
Holland EM, Braun FJ, Nonnengässer C, Harz H, Hegemann P (February 1996). "The nature of rhodopsin-triggered photocurrents in Chlamydomonas. I. Kinetics and influence of divalent ions". Biophysical Journal. 70 (2): 924–931. Bibcode:1996BpJ....70..924H. doi:10.1016/S0006-3495(96)79635-2. PMC 1224992. PMID 8789109.
Braun FJ, Hegemann P (March 1999). "Two light-activated conductances in the eye of the green alga Volvox carteri". Biophysical Journal. 76 (3): 1668–1678. Bibcode:1999BpJ....76.1668B. doi:10.1016/S0006-3495(99)77326-1. PMC 1300143. PMID 10049347.
Nagel G, Szellas T, Huhn W, Kateriya S, Adeishvili N, Berthold P, et al. (November 2003). "Channelrhodopsin-2, a directly light-gated cation-selective membrane channel". Proceedings of the National Academy of Sciences of the United States of America. 100 (24): 13940–13945. Bibcode:2003PNAS..10013940N. doi:10.1073/pnas.1936192100. PMC 283525. PMID 14615590.
Berthold P, Tsunoda SP, Ernst OP, Mages W, Gradmann D, Hegemann P (June 2008). "Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization". The Plant Cell. 20 (6): 1665–1677. Bibcode:2008PlanC..20.1665B. doi:10.1105/tpc.108.057919. PMC 2483371. PMID 18552201.
Kato HE, Zhang F, Yizhar O, Ramakrishnan C, Nishizawa T, Hirata K, et al. (January 2012). "Crystal structure of the channelrhodopsin light-gated cation channel". Nature. 482 (7385): 369–374. Bibcode:2012Natur.482..369K. doi:10.1038/nature10870. PMC 4160518. PMID 22266941.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Govorunova EG, Gou Y, Sineshchekov OA, Li H, Lu X, Wang Y, et al. (July 2022). "Kalium channelrhodopsins are natural light-gated potassium channels that mediate optogenetic inhibition". Nature Neuroscience. 25 (7): 967–974. doi:10.1038/s41593-022-01094-6. PMC 9854242. PMID 35726059. S2CID 249886382.
Kim YS, Kato HE, Yamashita K, Ito S, Inoue K, Ramakrishnan C, et al. (September 2018). "Crystal structure of the natural anion-conducting channelrhodopsin GtACR1". Nature. 561 (7723): 343–348. Bibcode:2018Natur.561..343K. doi:10.1038/s41586-018-0511-6. PMC 6340299. PMID 30158696.
Tajima S, Kim YS, Fukuda M, Byrne EF, Wang PY, Paggi JM, et al. (2023). "Structural basis for ion selectivity in potassium-selective channelrhodopsins". Cell. 186 (20): 4325–4344.e26. bioRxiv 10.1101/2022.10.30.514430. doi:10.1016/j.cell.2023.08.009. PMC 7615185. PMID 37652010.
Eria-Oliveira AS, Folacci M, Chassot AA, Fedou S, Thézé N, Zabelskii D, et al. (2024-01-02). "Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins". Nature Communications. 15 (1): 65. Bibcode:2024NatCo..15...65E. doi:10.1038/s41467-023-44548-6. ISSN 2041-1723. PMC 10761956. PMID 38167346.
Li X, Gutierrez DV, Hanson MG, Han J, Mark MD, Chiel H, et al. (December 2005). "Fast noninvasive activation and inhibition of neural and network activity by vertebrate rhodopsin and green algae channelrhodopsin". Proceedings of the National Academy of Sciences of the United States of America. 102 (49): 17816–17821. Bibcode:2005PNAS..10217816L. doi:10.1073/pnas.0509030102. PMC 1292990. PMID 16306259.
Lin JY (January 2011). "A user's guide to channelrhodopsin variants: features, limitations and future developments". Experimental Physiology. 96 (1): 19–25. doi:10.1113/expphysiol.2009.051961. PMC 2995811. PMID 20621963.
Lin JY, Lin MZ, Steinbach P, Tsien RY (March 2009). "Characterization of engineered channelrhodopsin variants with improved properties and kinetics". Biophysical Journal. 96 (5): 1803–1814. Bibcode:2009BpJ....96.1803L. doi:10.1016/j.bpj.2008.11.034. PMC 2717302. PMID 19254539.
Zhang F, Prigge M, Beyrière F, Tsunoda SP, Mattis J, Yizhar O, et al. (June 2008). "Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri". Nature Neuroscience. 11 (6): 631–633. doi:10.1038/nn.2120. PMC 2692303. PMID 18432196.
Yizhar O, Fenno LE, Prigge M, Schneider F, Davidson TJ, O'Shea DJ, et al. (July 2011). "Neocortical excitation/inhibition balance in information processing and social dysfunction". Nature. 477 (7363): 171–178. Bibcode:2011Natur.477..171Y. doi:10.1038/nature10360. PMC 4155501. PMID 21796121.
Adamantidis AR, Zhang F, Aravanis AM, Deisseroth K, de Lecea L (November 2007). "Neural substrates of awakening probed with optogenetic control of hypocretin neurons". Nature. 450 (7168): 420–424. Bibcode:2007Natur.450..420A. doi:10.1038/nature06310. PMC 6744371. PMID 17943086.
Tsai HC, Zhang F, Adamantidis A, Stuber GD, Bonci A, de Lecea L, et al. (May 2009). "Phasic firing in dopaminergic neurons is sufficient for behavioral conditioning". Science. 324 (5930): 1080–1084. Bibcode:2009Sci...324.1080T. doi:10.1126/science.1168878. PMC 5262197. PMID 19389999.
Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
Kravitz AV, Freeze BS, Parker PR, Kay K, Thwin MT, Deisseroth K, et al. (July 2010). "Regulation of parkinsonian motor behaviours by optogenetic control of basal ganglia circuitry". Nature. 466 (7306): 622–626. Bibcode:2010Natur.466..622K. doi:10.1038/nature09159. PMC 3552484. PMID 20613723.
Lee JH, Durand R, Gradinaru V, Zhang F, Goshen I, Kim DS, et al. (June 2010). "Global and local fMRI signals driven by neurons defined optogenetically by type and wiring". Nature. 465 (7299): 788–792. Bibcode:2010Natur.465..788L. doi:10.1038/nature09108. PMC 3177305. PMID 20473285.
Kätzel D, Zemelman BV, Buetfering C, Wölfel M, Miesenböck G (January 2011). "The columnar and laminar organization of inhibitory connections to neocortical excitatory cells". Nature Neuroscience. 14 (1): 100–107. doi:10.1038/nn.2687. PMC 3011044. PMID 21076426.
Wang H, Peca J, Matsuzaki M, Matsuzaki K, Noguchi J, Qiu L, et al. (May 2007). "High-speed mapping of synaptic connectivity using photostimulation in Channelrhodopsin-2 transgenic mice". Proceedings of the National Academy of Sciences of the United States of America. 104 (19): 8143–8148. Bibcode:2007PNAS..104.8143W. doi:10.1073/pnas.0700384104. PMC 1876585. PMID 17483470.
Mohanty SK, Reinscheid RK, Liu X, Okamura N, Krasieva TB, Berns MW (October 2008). "In-depth activation of channelrhodopsin 2-sensitized excitable cells with high spatial resolution using two-photon excitation with a near-infrared laser microbeam". Biophysical Journal. 95 (8): 3916–3926. Bibcode:2008BpJ....95.3916M. doi:10.1529/biophysj.108.130187. PMC 2553121. PMID 18621808.
Rickgauer JP, Tank DW (September 2009). "Two-photon excitation of channelrhodopsin-2 at saturation". Proceedings of the National Academy of Sciences of the United States of America. 106 (35): 15025–15030. Bibcode:2009PNAS..10615025R. doi:10.1073/pnas.0907084106. PMC 2736443. PMID 19706471.
Andrasfalvy BK, Zemelman BV, Tang J, Vaziri A (June 2010). "Two-photon single-cell optogenetic control of neuronal activity by sculpted light". Proceedings of the National Academy of Sciences of the United States of America. 107 (26): 11981–11986. Bibcode:2010PNAS..10711981A. doi:10.1073/pnas.1006620107. PMC 2900666. PMID 20543137.
Schoenenberger P, Gerosa D, Oertner TG (December 2009). "Temporal control of immediate early gene induction by light". PLOS ONE. 4 (12) e8185. Bibcode:2009PLoSO...4.8185S. doi:10.1371/journal.pone.0008185. PMC 2780714. PMID 19997631.
Berndt A, Schoenenberger P, Mattis J, Tye KM, Deisseroth K, Hegemann P, et al. (May 2011). "High-efficiency channelrhodopsins for fast neuronal stimulation at low light levels". Proceedings of the National Academy of Sciences of the United States of America. 108 (18): 7595–7600. Bibcode:2011PNAS..108.7595B. doi:10.1073/pnas.1017210108. PMC 3088623. PMID 21504945.
Dawydow A, Gueta R, Ljaschenko D, Ullrich S, Hermann M, Ehmann N, et al. (September 2014). "Channelrhodopsin-2-XXL, a powerful optogenetic tool for low-light applications". Proceedings of the National Academy of Sciences of the United States of America. 111 (38): 13972–13977. Bibcode:2014PNAS..11113972D. doi:10.1073/pnas.1408269111. PMC 4183338. PMID 25201989.
Lin JY, Knutsen PM, Muller A, Kleinfeld D, Tsien RY (October 2013). "ReaChR: a red-shifted variant of channelrhodopsin enables deep transcranial optogenetic excitation". Nature Neuroscience. 16 (10): 1499–1508. doi:10.1038/nn.3502. PMC 3793847. PMID 23995068.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Hooks BM, Lin JY, Guo C, Svoboda K (March 2015). "Dual-channel circuit mapping reveals sensorimotor convergence in the primary motor cortex". The Journal of Neuroscience. 35 (10): 4418–4426. doi:10.1523/JNEUROSCI.3741-14.2015. PMC 4355205. PMID 25762684.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Wiegert JS, Oertner TG, et al. (December 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Hochbaum DR, Zhao Y, Farhi SL, Klapoetke N, Werley CA, Kapoor V, et al. (August 2014). "All-optical electrophysiology in mammalian neurons using engineered microbial rhodopsins". Nature Methods. 11 (8): 825–833. doi:10.1038/nmeth.3000. PMC 4117813. PMID 24952910.
Dana H, Mohar B, Sun Y, Narayan S, Gordus A, Hasseman JP, et al. (March 2016). "Sensitive red protein calcium indicators for imaging neural activity". eLife. 5 e12727. doi:10.7554/eLife.12727. PMC 4846379. PMID 27011354.
Afshar Saber W, Gasparoli FM, Dirks MG, Gunn-Moore FJ, Antkowiak M (2018). "All-Optical Assay to Study Biological Neural Networks". Frontiers in Neuroscience. 12 451. doi:10.3389/fnins.2018.00451. PMC 6041400. PMID 30026684.
Fernandez Lahore RG, Pampaloni NP, Peter E, Heim MM, Tillert L, Vierock J, et al. (December 2022). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1) 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. PMC 9772239. PMID 36543773.
Vierock J, Peter E, Grimm C, Rozenberg A, Chen IW, Tillert L, et al. (December 2022). "WiChR, a highly potassium-selective channelrhodopsin for low-light one- and two-photon inhibition of excitable cells". Science Advances. 8 (49) eadd7729. Bibcode:2022SciA....8D7729V. doi:10.1126/sciadv.add7729. PMC 9733931. PMID 36383037.
Wietek J, Beltramo R, Scanziani M, Hegemann P, Oertner TG, Wiegert JS (October 2015). "An improved chloride-conducting channelrhodopsin for light-induced inhibition of neuronal activity in vivo". Scientific Reports. 5 14807. Bibcode:2015NatSR...514807W. doi:10.1038/srep14807. PMC 4595828. PMID 26443033.
Berndt A, Lee SY, Wietek J, Ramakrishnan C, Steinberg EE, Rashid AJ, et al. (January 2016). "Structural foundations of optogenetics: Determinants of channelrhodopsin ion selectivity". Proceedings of the National Academy of Sciences of the United States of America. 113 (4): 822–829. Bibcode:2016PNAS..113..822B. doi:10.1073/pnas.1523341113. PMC 4743797. PMID 26699459.
Fernandez Lahore RG, Pampaloni NP, Schiewer E, Heim MM, Tillert L, Vierock J, et al. (2022-12-21). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1): 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. ISSN 2041-1723. PMC 9772239. PMID 36543773.
Douglass AD, Kraves S, Deisseroth K, Schier AF, Engert F (August 2008). "Escape behavior elicited by single, channelrhodopsin-2-evoked spikes in zebrafish somatosensory neurons". Current Biology. 18 (15): 1133–1137. Bibcode:2008CBio...18.1133D. doi:10.1016/j.cub.2008.06.077. PMC 2891506. PMID 18682213.
Huber D, Petreanu L, Ghitani N, Ranade S, Hromádka T, Mainen Z, et al. (January 2008). "Sparse optical microstimulation in barrel cortex drives learned behaviour in freely moving mice". Nature. 451 (7174): 61–64. Bibcode:2008Natur.451...61H. doi:10.1038/nature06445. PMC 3425380. PMID 18094685.
Han X, Boyden ES (March 2007). "Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution". PLOS ONE. 2 (3) e299. Bibcode:2007PLoSO...2..299H. doi:10.1371/journal.pone.0000299. PMC 1808431. PMID 17375185.
Govorunova EG, Sineshchekov OA, Janz R, Liu X, Spudich JL (August 2015). "NEUROSCIENCE. Natural light-gated anion channels: A family of microbial rhodopsins for advanced optogenetics". Science. 349 (6248): 647–650. Bibcode:2015Sci...349..647G. doi:10.1126/science.aaa7484. PMC 4764398. PMID 26113638.
Klapoetke NC, Murata Y, Kim SS, Pulver SR, Birdsey-Benson A, Cho YK, et al. (March 2014). "Independent optical excitation of distinct neural populations". Nature Methods. 11 (3): 338–346. Bibcode:2014NatCB..11..338K. doi:10.1038/nmeth.2836. PMC 3943671. PMID 24509633.
Vierock J, Rodriguez-Rozada S, Dieter A, Pieper F, Sims R, Tenedini F, et al. (July 2021). "BiPOLES is an optogenetic tool developed for bidirectional dual-color control of neurons". Nature Communications. 12 (1) 4527. Bibcode:2021NatCo..12.4527V. doi:10.1038/s41467-021-24759-5. PMC 8313717. PMID 34312384.
Zhang YP, Holbro N, Oertner TG (August 2008). "Optical induction of plasticity at single synapses reveals input-specific accumulation of alphaCaMKII". Proceedings of the National Academy of Sciences of the United States of America. 105 (33): 12039–12044. Bibcode:2008PNAS..10512039Z. doi:10.1073/pnas.0802940105. PMC 2575337. PMID 18697934.
Anisimova M, van Bommel B, Wang R, Mikhaylova M, Simon Wiegert J, Oertner TG, et al. (February 2022). "Spike-timing-dependent plasticity rewards synchrony rather than causality". Cerebral Cortex. 33 (1): 23–34. doi:10.1093/cercor/bhac050. PMC 9758582. PMID 35203089.
Petreanu L, Mao T, Sternson SM, Svoboda K (February 2009). "The subcellular organization of neocortical excitatory connections". Nature. 457 (7233): 1142–1145. Bibcode:2009Natur.457.1142P. doi:10.1038/nature07709. PMC 2745650. PMID 19151697.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Bi A, Cui J, Ma YP, Olshevskaya E, Pu M, Dizhoor AM, et al. (April 2006). "Ectopic expression of a microbial-type rhodopsin restores visual responses in mice with photoreceptor degeneration". Neuron. 50 (1): 23–33. doi:10.1016/j.neuron.2006.02.026. PMC 1459045. PMID 16600853.
Hernandez VH, Gehrt A, Reuter K, Jing Z, Jeschke M, Mendoza Schulz A, et al. (March 2014). "Optogenetic stimulation of the auditory pathway". The Journal of Clinical Investigation. 124 (3): 1114–1129. doi:10.1172/JCI69050. PMC 3934189. PMID 24509078.
Mager T, Lopez de la Morena D, Senn V, Schlotte J, D Errico A, Feldbauer K, et al. (May 2018). "High frequency neural spiking and auditory signaling by ultrafast red-shifted optogenetics". Nature Communications. 9 (1) 1750. Bibcode:2018NatCo...9.1750M. doi:10.1038/s41467-018-04146-3. PMC 5931537. PMID 29717130.
Keppeler D, Merino RM, Lopez de la Morena D, Bali B, Huet AT, Gehrt A, et al. (December 2018). "Ultrafast optogenetic stimulation of the auditory pathway by targeting-optimized Chronos". The EMBO Journal. 37 (24) e99649. doi:10.15252/embj.201899649. PMC 6293277. PMID 30396994.

psu.edu (Global: 207^th place; English: 136^th place)

citeseerx.ist.psu.edu

Gradinaru V, Mogri M, Thompson KR, Henderson JM, Deisseroth K (April 2009). "Optical deconstruction of parkinsonian neural circuitry". Science. 324 (5925): 354–359. Bibcode:2009Sci...324..354G. CiteSeerX 10.1.1.368.668. doi:10.1126/science.1167093. PMC 6744370. PMID 19299587.
Xu Z, Ziye X, Craig H, Silvia F (Dec 2013). "Spike-based indirect training of a spiking neural network-controlled virtual insect". 52nd IEEE Conference on Decision and Control. IEEE Decision and Control. pp. 6798–6805. CiteSeerX 10.1.1.671.6351. doi:10.1109/CDC.2013.6760966. ISBN 978-1-4673-5717-3. S2CID 13992150.

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api.semanticscholar.org

Nagel G, Ollig D, Fuhrmann M, Kateriya S, Musti AM, Bamberg E, et al. (June 2002). "Channelrhodopsin-1: a light-gated proton channel in green algae". Science. 296 (5577): 2395–2398. Bibcode:2002Sci...296.2395N. doi:10.1126/science.1072068. PMID 12089443. S2CID 206506942.
Foster KW, Saranak J, Patel N, Zarilli G, Okabe M, Kline T, et al. (October 1984). "A rhodopsin is the functional photoreceptor for phototaxis in the unicellular eukaryote Chlamydomonas". Nature. 311 (5988): 756–759. Bibcode:1984Natur.311..756F. doi:10.1038/311756a0. PMID 6493336. S2CID 4263301.
Litvin FF, Sineshchekov OA, Sineshchekov VA (February 1978). "Photoreceptor electric potential in the phototaxis of the alga Haematococcus pluvialis". Nature. 271 (5644): 476–478. Bibcode:1978Natur.271..476L. doi:10.1038/271476a0. PMID 628427. S2CID 4165365.
Harz H, Hegemann P (June 1991). "Rhodopsin-regulated calcium currents in Chlamydomonas". Nature. 351 (6326): 489–491. Bibcode:1991Natur.351..489H. doi:10.1038/351489a0. S2CID 4309593.
Govorunova EG, Gou Y, Sineshchekov OA, Li H, Lu X, Wang Y, et al. (July 2022). "Kalium channelrhodopsins are natural light-gated potassium channels that mediate optogenetic inhibition". Nature Neuroscience. 25 (7): 967–974. doi:10.1038/s41593-022-01094-6. PMC 9854242. PMID 35726059. S2CID 249886382.
Boyden ES, Zhang F, Bamberg E, Nagel G, Deisseroth K (September 2005). "Millisecond-timescale, genetically targeted optical control of neural activity". Nature Neuroscience. 8 (9): 1263–1268. doi:10.1038/nn1525. PMID 16116447. S2CID 6809511.
Zhang F, Wang LP, Boyden ES, Deisseroth K (October 2006). "Channelrhodopsin-2 and optical control of excitable cells". Nature Methods. 3 (10): 785–792. doi:10.1038/nmeth936. PMID 16990810. S2CID 15096826.
Gunaydin LA, Yizhar O, Berndt A, Sohal VS, Deisseroth K, Hegemann P (March 2010). "Ultrafast optogenetic control". Nature Neuroscience. 13 (3): 387–392. doi:10.1038/nn.2495. PMID 20081849. S2CID 7457755.
Berndt A, Yizhar O, Gunaydin LA, Hegemann P, Deisseroth K (February 2009). "Bi-stable neural state switches". Nature Neuroscience. 12 (2): 229–234. doi:10.1038/nn.2247. PMID 19079251. S2CID 15125498.
Zhang YP, Oertner TG (February 2007). "Optical induction of synaptic plasticity using a light-sensitive channel". Nature Methods. 4 (2): 139–141. doi:10.1038/nmeth988. PMID 17195846. S2CID 17721823.
Petreanu L, Huber D, Sobczyk A, Svoboda K (May 2007). "Channelrhodopsin-2-assisted circuit mapping of long-range callosal projections". Nature Neuroscience. 10 (5): 663–668. doi:10.1038/nn1891. PMID 17435752. S2CID 14275254.
Reiner A, Isacoff EY (October 2013). "The Brain Prize 2013: the optogenetics revolution". Trends in Neurosciences. 36 (10): 557–560. doi:10.1016/j.tins.2013.08.005. PMID 24054067. S2CID 205404606.
Kleinlogel S, Feldbauer K, Dempski RE, Fotis H, Wood PG, Bamann C, et al. (April 2011). "Ultra light-sensitive and fast neuronal activation with the Ca²+-permeable channelrhodopsin CatCh". Nature Neuroscience. 14 (4): 513–518. doi:10.1038/nn.2776. PMID 21399632. S2CID 5907240.
Wietek J, Wiegert JS, Adeishvili N, Schneider F, Watanabe H, Tsunoda SP, et al. (April 2014). "Conversion of channelrhodopsin into a light-gated chloride channel". Science. 344 (6182): 409–412. Bibcode:2014Sci...344..409W. doi:10.1126/science.1249375. PMID 24674867. S2CID 206554245.
Zhang F, Wang LP, Brauner M, Liewald JF, Kay K, Watzke N, et al. (April 2007). "Multimodal fast optical interrogation of neural circuitry". Nature. 446 (7136): 633–639. Bibcode:2007Natur.446..633Z. doi:10.1038/nature05744. PMID 17410168. S2CID 4415339.
Xu Z, Ziye X, Craig H, Silvia F (Dec 2013). "Spike-based indirect training of a spiking neural network-controlled virtual insect". 52nd IEEE Conference on Decision and Control. IEEE Decision and Control. pp. 6798–6805. CiteSeerX 10.1.1.671.6351. doi:10.1109/CDC.2013.6760966. ISBN 978-1-4673-5717-3. S2CID 13992150.
Lagali PS, Balya D, Awatramani GB, Münch TA, Kim DS, Busskamp V, et al. (June 2008). "Light-activated channels targeted to ON bipolar cells restore visual function in retinal degeneration". Nature Neuroscience. 11 (6): 667–675. doi:10.1038/nn.2117. PMID 18432197. S2CID 6798764.

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search.worldcat.org

Eria-Oliveira AS, Folacci M, Chassot AA, Fedou S, Thézé N, Zabelskii D, et al. (2024-01-02). "Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins". Nature Communications. 15 (1): 65. Bibcode:2024NatCo..15...65E. doi:10.1038/s41467-023-44548-6. ISSN 2041-1723. PMC 10761956. PMID 38167346.
Fernandez Lahore RG, Pampaloni NP, Schiewer E, Heim MM, Tillert L, Vierock J, et al. (2022-12-21). "Calcium-permeable channelrhodopsins for the photocontrol of calcium signalling". Nature Communications. 13 (1): 7844. Bibcode:2022NatCo..13.7844F. doi:10.1038/s41467-022-35373-4. ISSN 2041-1723. PMC 9772239. PMID 36543773.

Channelrhodopsin (English Wikipedia)

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