Chromatin (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Chromatin" in English language version.

refsWebsite

Global rank English rank

77nih.gov

4^th place

48doi.org

2^nd place

13worldcat.org

5^th place

8harvard.edu

18^th place

17^th place

7semanticscholar.org

11^th place

8^th place

3nature.com

234^th place

397^th place

1horizonpress.com

low place

1portlandpress.com

low place

1science.org

1,160^th place

737^th place

1mdc-berlin.de

low place

1web.archive.org

1^st place

1arxiv.org

69^th place

59^th place

1springer.com

274^th place

309^th place

arxiv.org

Nicodemi M, Panning B, Prisco A (May 2008). "A thermodynamic switch for chromosome colocalization". Genetics. 179 (1): 717–21. arXiv:0809.4788. doi:10.1534/genetics.107.083154. PMC 2390650. PMID 18493085.

doi.org

Monday, Tanmoy (July 2010). "Characterization of the RNA content of chromatin". Genome Res. 20 (7): 899–907. doi:10.1101/gr.103473.109. PMC 2892091. PMID 20404130.
Maeshima, K., Ide, S., & Babokhov, M. (2019). Dynamic chromatin organization without the 30 nm fiber. Current opinion in cell biology, 58, 95–104. https://doi.org/10.1016/j.ceb.2019.02.003
Hansen, Jeffrey (March 2012). "Human mitotic chromosome structure: what happened to the 30-nm fibre?". The EMBO Journal. 31 (7): 1621–1623. doi:10.1038/emboj.2012.66. PMC 3321215. PMID 22415369.
Dame, R.T. (May 2005). "The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin". Molecular Microbiology. 56 (4): 858–870. doi:10.1111/j.1365-2958.2005.04598.x. PMID 15853876. S2CID 26965112.
Shogren-Knaak, M., Ishii, H., Sun, J. M., Pazin, M. J., Davie, J. R., & Peterson, C. L. (2006). Histone H4-K16 acetylation controls chromatin structure and protein interactions. Science, 311(5762), 844–847. https://doi.org/10.1126/science.1124000
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (April 2006). "A bivalent chromatin structure marks key developmental genes in embryonic stem cells". Cell. 125 (2): 315–26. doi:10.1016/j.cell.2006.02.041. ISSN 0092-8674. PMID 16630819. S2CID 9993008.
Neidle, Stephen (January 2021). "Beyond the double helix: DNA structural diversity and the PDB". Journal of Biological Chemistry. 296: 100553. doi:10.1016/j.jbc.2021.100553. PMC 8063756. PMID 33744292.
Minchin, Steve; Lodge, Julia (2019-10-16). "Understanding biochemistry: structure and function of nucleic acids". Essays in Biochemistry. 63 (4): 433–456. doi:10.1042/EBC20180038. ISSN 0071-1365. PMC 6822018. PMID 31652314.
Robinson DJ; Fairall L; Huynh VA; Rhodes D. (April 2006). "EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure". Proceedings of the National Academy of Sciences of the United States of America. 103 (17): 6506–11. Bibcode:2006PNAS..103.6506R. doi:10.1073/pnas.0601212103. PMC 1436021. PMID 16617109.
Wong H, Victor JM, Mozziconacci J (September 2007). Chen P (ed.). "An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length". PLoS ONE. 2 (9): e877. Bibcode:2007PLoSO...2..877W. doi:10.1371/journal.pone.0000877. PMC 1963316. PMID 17849006.
Fudenberg G, Abdennur N, Imakaev M, Goloborodko A, Mirny LA (2017). "Emerging Evidence of Chromosome Folding by Loop Extrusion". Cold Spring Harbor Symposia on Quantitative Biology. 82: 45–55. doi:10.1101/sqb.2017.82.034710. PMC 6512960. PMID 29728444.
Kadauke S, Blobel GA (2009). "Chromatin loops in gene regulation". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1789 (1): 17–25. doi:10.1016/j.bbagrm.2008.07.002. PMC 2638769. PMID 18675948.
Davidson, Iain F.; Bauer, Benedikt; Goetz, Daniela; Tang, Wen; Wutz, Gordana; Peters, Jan-Michael (2019-12-13). "DNA loop extrusion by human cohesin". Science. 366 (6471): 1338–1345. doi:10.1126/science.aaz3418. ISSN 0036-8075.
Busslinger, Georg A.; Stocsits, Roman R.; van der Lelij, Petra; Axelsson, Elin; Tedeschi, Antonio; Galjart, Niels; Peters, Jan-Michael (April 2017). "Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl". Nature. 544 (7651): 503–507. doi:10.1038/nature22063. ISSN 0028-0836. PMC 6080695. PMID 28424523.
Oh HJ, Aguilar R, Kesner B, Lee HG, Kriz AJ, Chu HP, Lee JT (2021). "Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops". Cell. 184 (25): 6157–6173. doi:10.1016/j.cell.2021.11.012. ISSN 0092-8674. PMC 8671370. PMID 34856126.
Nicodemi M, Pombo A (June 2014). "Models of chromosome structure" (PDF). Curr. Opin. Cell Biol. 28: 90–5. doi:10.1016/j.ceb.2014.04.004. PMID 24804566. Archived (PDF) from the original on 2017-09-21.
Nicodemi M, Panning B, Prisco A (May 2008). "A thermodynamic switch for chromosome colocalization". Genetics. 179 (1): 717–21. arXiv:0809.4788. doi:10.1534/genetics.107.083154. PMC 2390650. PMID 18493085.
Bohn M, Heermann DW (2010). "Diffusion-driven looping provides a consistent framework for chromatin organization". PLOS ONE. 5 (8): e12218. Bibcode:2010PLoSO...512218B. doi:10.1371/journal.pone.0012218. PMC 2928267. PMID 20811620.
Poonperm, R; Takata, H; Hamano, T; Matsuda, A; Uchiyama, S; Hiraoka, Y; Fukui, K (1 July 2015). "Chromosome Scaffold is a Double-Stranded Assembly of Scaffold Proteins". Scientific Reports. 5: 11916. Bibcode:2015NatSR...511916P. doi:10.1038/srep11916. PMC 4487240. PMID 26132639.
Xing H, Vanderford NL, Sarge KD (November 2008). "The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action". Nat. Cell Biol. 10 (11): 1318–23. doi:10.1038/ncb1790. PMC 2577711. PMID 18931662.
Allfrey VG, Faulkner R, Mirsky AE (May 1964). "Acetylation and Methylation of Histones and Their Possible Role in the Regulation of RNA Synthesis". Proc. Natl. Acad. Sci. U.S.A. 51 (5): 786–94. Bibcode:1964PNAS...51..786A. doi:10.1073/pnas.51.5.786. PMC 300163. PMID 14172992.
Maeshima, K., Ide, S., Hibino, K., & Sasai, M. (2016). Liquid-like behavior of chromatin. Current opinion in genetics & development, 37, 36–45. https://doi.org/10.1016/j.gde.2015.11.006
Kaochar S, Tu BP (November 2012). "Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression". Trends Biochem. Sci. 37 (11): 477–83. doi:10.1016/j.tibs.2012.07.008. PMC 3482309. PMID 22944281.
De Vries M, Ramos L, Housein Z, De Boer P (May 2012). "Chromatin remodelling initiation during human spermiogenesis". Biol Open. 1 (5): 446–57. doi:10.1242/bio.2012844. PMC 3507207. PMID 23213436.
Murugesapillai D, McCauley MJ, Huo R, Nelson Holte MH, Stepanyants A, Maher LJ, Israeloff NE, Williams MC (August 2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ, Williams MC (February 2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Aleksandrov, Radoslav; Hristova, Rossitsa; Stoynov, Stoyno; Gospodinov, Anastas (2020-08-07). "The Chromatin Response to Double-Strand DNA Breaks and Their Repair". Cells. 9 (8): 1853. doi:10.3390/cells9081853. ISSN 2073-4409. PMC 7464352. PMID 32784607.
Miné-Hattab, Judith; Chiolo, Irene (2020-08-27). "Complex Chromatin Motions for DNA Repair". Frontiers in Genetics. 11: 800. doi:10.3389/fgene.2020.00800. ISSN 1664-8021. PMC 7481375. PMID 33061931.
Lamm, Noa; Rogers, Samuel; Cesare, Anthony J. (October 2021). "Chromatin mobility and relocation in DNA repair". Trends in Cell Biology. 31 (10): 843–855. doi:10.1016/j.tcb.2021.06.002. ISSN 0962-8924. PMID 34183232. S2CID 235672793.
Trotter, Kevin W.; Archer, Trevor K. (2012), Morse, Randall H. (ed.), "Assaying Chromatin Structure and Remodeling by Restriction Enzyme Accessibility", Chromatin Remodeling, Methods in Molecular Biology, vol. 833, Totowa, NJ: Humana Press, pp. 89–102, doi:10.1007/978-1-61779-477-3_6, ISBN 978-1-61779-476-6, PMC 3607496, PMID 22183589
Liu B, Yip RK, Zhou Z (2012). "Chromatin remodeling, DNA damage repair and aging". Curr. Genomics. 13 (7): 533–47. doi:10.2174/138920212803251373. PMC 3468886. PMID 23633913.
Sellou H, Lebeaupin T, Chapuis C, Smith R, Hegele A, Singh HR, Kozlowski M, Bultmann S, Ladurner AG, Timinszky G, Huet S (2016). "The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage". Mol. Biol. Cell. 27 (24): 3791–3799. doi:10.1091/mbc.E16-05-0269. PMC 5170603. PMID 27733626.
Haince JF, McDonald D, Rodrigue A, Déry U, Masson JY, Hendzel MJ, Poirier GG (2008). "PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites". J. Biol. Chem. 283 (2): 1197–208. doi:10.1074/jbc.M706734200. PMID 18025084.
Rogakou EP, Pilch DR, Orr AH, Ivanova VS, Bonner WM (1998). "DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139". J. Biol. Chem. 273 (10): 5858–68. doi:10.1074/jbc.273.10.5858. PMID 9488723.
Mailand N, Bekker-Jensen S, Faustrup H, Melander F, Bartek J, Lukas C, Lukas J (2007). "RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins". Cell. 131 (5): 887–900. doi:10.1016/j.cell.2007.09.040. PMID 18001824. S2CID 14232192.
Luijsterburg MS, Acs K, Ackermann L, Wiegant WW, Bekker-Jensen S, Larsen DH, Khanna KK, van Attikum H, Mailand N, Dantuma NP (2012). "A new non-catalytic role for ubiquitin ligase RNF8 in unfolding higher-order chromatin structure". EMBO J. 31 (11): 2511–27. doi:10.1038/emboj.2012.104. PMC 3365417. PMID 22531782.
Van Buren G, Rashid A, Yang AD, et al. (August 2007). "The development and characterization of a human midgut carcinoid cell line". Clin. Cancer Res. 13 (16): 4704–12. doi:10.1158/1078-0432.CCR-06-2723. PMID 17699847.
Shidham VB, Galindo LM (1999). "Pheochromocytoma. Cytologic findings on intraoperative scrape smears in five cases". Acta Cytol. 43 (2): 207–13. doi:10.1159/000330978. PMID 10097711. S2CID 232277473.
Small, Eliza C.; Maryanski, Danielle N.; Rodriguez, Keli L.; Harvey, Kevin J.; Keogh, Michael-C.; Johnstone, Andrea L. (2021), Posch, Anton (ed.), "Chromatin Immunoprecipitation (ChIP) to Study DNA–Protein Interactions", Proteomic Profiling, Methods in Molecular Biology, vol. 2261, New York, NY: Springer US, pp. 323–343, doi:10.1007/978-1-0716-1186-9_20, ISBN 978-1-0716-1185-2, PMID 33420999, S2CID 231304041, retrieved 2022-10-24
Rossi, M.J; Kuntala, P.K; Lai, W.K.M; et al. (10 March 2021). "A high-resolution protein architecture of the budding yeast genome". Nature. 592 (7853): 309–314. Bibcode:2021Natur.592..309R. doi:10.1038/s41586-021-03314-8. PMC 8035251. PMID 33692541.
Giresi, Paul G.; Kim, Jonghwan; McDaniell, Ryan M.; Iyer, Vishwanath R.; Lieb, Jason D. (2007-06-01). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–885. doi:10.1101/gr.5533506. ISSN 1088-9051. PMC 1891346. PMID 17179217.
Galas, D. J.; Schmitz, A. (1978-09-01). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. ISSN 0305-1048. PMC 342238. PMID 212715.
Cui, Kairong; Zhao, Keji (2012-01-01). "Genome-Wide Approaches to Determining Nucleosome Occupancy in Metazoans Using MNase-Seq". Chromatin Remodeling. Methods in Molecular Biology. Vol. 833. pp. 413–419. doi:10.1007/978-1-61779-477-3_24. ISBN 978-1-61779-476-6. ISSN 1940-6029. PMC 3541821. PMID 22183607.
Buenrostro, Jason D.; Giresi, Paul G.; Zaba, Lisa C.; Chang, Howard Y.; Greenleaf, William J. (2013-12-01). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–1218. doi:10.1038/nmeth.2688. ISSN 1548-7105. PMC 3959825. PMID 24097267.
Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY (2016-05-06). "MNase titration reveals differences between nucleosome occupancy and chromatin accessibility". Nature Communications. 7: 11485. Bibcode:2016NatCo...711485M. doi:10.1038/ncomms11485. PMC 4859066. PMID 27151365.
Racko D, Benedetti F, Goundaroulis D, Stasiak A (2018). "Chromatin Loop Extrusion and Chromatin Unknotting". Polymers. 10 (10): 1126–1137. doi:10.3390/polym10101126. PMC 6403842. PMID 30961051.
Luijsterburg, Martijn S.; White, Malcolm F.; van Driel, Roel; Dame, Remus Th. (8 January 2009). "The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 43 (6): 393–418. doi:10.1080/10409230802528488. PMID 19037758. S2CID 85874882.
Sanosaka, Tsukasa; Okuno, Hironobu; Mizota, Noriko; Andoh-Noda, Tomoko; Sato, Miki; Tomooka, Ryo; Banno, Satoe; Kohyama, Jun; Okano, Hideyuki (2022-12-31). "Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells". Scientific Reports. 12 (1): 22648. Bibcode:2022NatSR..1222648S. doi:10.1038/s41598-022-27293-6. ISSN 2045-2322. PMC 9805427. PMID 36587182.

harvard.edu

ui.adsabs.harvard.edu

Robinson DJ; Fairall L; Huynh VA; Rhodes D. (April 2006). "EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure". Proceedings of the National Academy of Sciences of the United States of America. 103 (17): 6506–11. Bibcode:2006PNAS..103.6506R. doi:10.1073/pnas.0601212103. PMC 1436021. PMID 16617109.
Wong H, Victor JM, Mozziconacci J (September 2007). Chen P (ed.). "An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length". PLoS ONE. 2 (9): e877. Bibcode:2007PLoSO...2..877W. doi:10.1371/journal.pone.0000877. PMC 1963316. PMID 17849006.
Bohn M, Heermann DW (2010). "Diffusion-driven looping provides a consistent framework for chromatin organization". PLOS ONE. 5 (8): e12218. Bibcode:2010PLoSO...512218B. doi:10.1371/journal.pone.0012218. PMC 2928267. PMID 20811620.
Poonperm, R; Takata, H; Hamano, T; Matsuda, A; Uchiyama, S; Hiraoka, Y; Fukui, K (1 July 2015). "Chromosome Scaffold is a Double-Stranded Assembly of Scaffold Proteins". Scientific Reports. 5: 11916. Bibcode:2015NatSR...511916P. doi:10.1038/srep11916. PMC 4487240. PMID 26132639.
Allfrey VG, Faulkner R, Mirsky AE (May 1964). "Acetylation and Methylation of Histones and Their Possible Role in the Regulation of RNA Synthesis". Proc. Natl. Acad. Sci. U.S.A. 51 (5): 786–94. Bibcode:1964PNAS...51..786A. doi:10.1073/pnas.51.5.786. PMC 300163. PMID 14172992.
Rossi, M.J; Kuntala, P.K; Lai, W.K.M; et al. (10 March 2021). "A high-resolution protein architecture of the budding yeast genome". Nature. 592 (7853): 309–314. Bibcode:2021Natur.592..309R. doi:10.1038/s41586-021-03314-8. PMC 8035251. PMID 33692541.
Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY (2016-05-06). "MNase titration reveals differences between nucleosome occupancy and chromatin accessibility". Nature Communications. 7: 11485. Bibcode:2016NatCo...711485M. doi:10.1038/ncomms11485. PMC 4859066. PMID 27151365.
Sanosaka, Tsukasa; Okuno, Hironobu; Mizota, Noriko; Andoh-Noda, Tomoko; Sato, Miki; Tomooka, Ryo; Banno, Satoe; Kohyama, Jun; Okano, Hideyuki (2022-12-31). "Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells". Scientific Reports. 12 (1): 22648. Bibcode:2022NatSR..1222648S. doi:10.1038/s41598-022-27293-6. ISSN 2045-2322. PMC 9805427. PMID 36587182.

horizonpress.com

Portoso M, Cavalli G (2008). "The Role of RNAi and Noncoding RNAs in Polycomb Mediated Control of Gene Expression and Genomic Programming". RNA and the Regulation of Gene Expression: A Hidden Layer of Complexity. Caister Academic Press. ISBN 978-1-904455-25-7.

mdc-berlin.de

edoc.mdc-berlin.de

Nicodemi M, Pombo A (June 2014). "Models of chromosome structure" (PDF). Curr. Opin. Cell Biol. 28: 90–5. doi:10.1016/j.ceb.2014.04.004. PMID 24804566. Archived (PDF) from the original on 2017-09-21.

nature.com

Annunziato, Anthony T. "DNA Packaging: Nucleosomes and Chromatin". Scitable. Nature Education. Retrieved 2015-10-29.
Busslinger, Georg A.; Stocsits, Roman R.; van der Lelij, Petra; Axelsson, Elin; Tedeschi, Antonio; Galjart, Niels; Peters, Jan-Michael (April 2017). "Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl". Nature. 544 (7651): 503–507. doi:10.1038/nature22063. ISSN 0028-0836. PMC 6080695. PMID 28424523.
"Chromatin remodelling - Latest research and news | Nature". www.nature.com. Retrieved 2023-01-07.

nih.gov

pubmed.ncbi.nlm.nih.gov

Monday, Tanmoy (July 2010). "Characterization of the RNA content of chromatin". Genome Res. 20 (7): 899–907. doi:10.1101/gr.103473.109. PMC 2892091. PMID 20404130.
Hansen, Jeffrey (March 2012). "Human mitotic chromosome structure: what happened to the 30-nm fibre?". The EMBO Journal. 31 (7): 1621–1623. doi:10.1038/emboj.2012.66. PMC 3321215. PMID 22415369.
Dame, R.T. (May 2005). "The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin". Molecular Microbiology. 56 (4): 858–870. doi:10.1111/j.1365-2958.2005.04598.x. PMID 15853876. S2CID 26965112.
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (April 2006). "A bivalent chromatin structure marks key developmental genes in embryonic stem cells". Cell. 125 (2): 315–26. doi:10.1016/j.cell.2006.02.041. ISSN 0092-8674. PMID 16630819. S2CID 9993008.
Neidle, Stephen (January 2021). "Beyond the double helix: DNA structural diversity and the PDB". Journal of Biological Chemistry. 296: 100553. doi:10.1016/j.jbc.2021.100553. PMC 8063756. PMID 33744292.
Minchin, Steve; Lodge, Julia (2019-10-16). "Understanding biochemistry: structure and function of nucleic acids". Essays in Biochemistry. 63 (4): 433–456. doi:10.1042/EBC20180038. ISSN 0071-1365. PMC 6822018. PMID 31652314.
Robinson DJ; Fairall L; Huynh VA; Rhodes D. (April 2006). "EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure". Proceedings of the National Academy of Sciences of the United States of America. 103 (17): 6506–11. Bibcode:2006PNAS..103.6506R. doi:10.1073/pnas.0601212103. PMC 1436021. PMID 16617109.
Wong H, Victor JM, Mozziconacci J (September 2007). Chen P (ed.). "An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length". PLoS ONE. 2 (9): e877. Bibcode:2007PLoSO...2..877W. doi:10.1371/journal.pone.0000877. PMC 1963316. PMID 17849006.
Fudenberg G, Abdennur N, Imakaev M, Goloborodko A, Mirny LA (2017). "Emerging Evidence of Chromosome Folding by Loop Extrusion". Cold Spring Harbor Symposia on Quantitative Biology. 82: 45–55. doi:10.1101/sqb.2017.82.034710. PMC 6512960. PMID 29728444.
Kadauke S, Blobel GA (2009). "Chromatin loops in gene regulation". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1789 (1): 17–25. doi:10.1016/j.bbagrm.2008.07.002. PMC 2638769. PMID 18675948.
Busslinger, Georg A.; Stocsits, Roman R.; van der Lelij, Petra; Axelsson, Elin; Tedeschi, Antonio; Galjart, Niels; Peters, Jan-Michael (April 2017). "Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl". Nature. 544 (7651): 503–507. doi:10.1038/nature22063. ISSN 0028-0836. PMC 6080695. PMID 28424523.
Oh HJ, Aguilar R, Kesner B, Lee HG, Kriz AJ, Chu HP, Lee JT (2021). "Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops". Cell. 184 (25): 6157–6173. doi:10.1016/j.cell.2021.11.012. ISSN 0092-8674. PMC 8671370. PMID 34856126.
Nicodemi M, Pombo A (June 2014). "Models of chromosome structure" (PDF). Curr. Opin. Cell Biol. 28: 90–5. doi:10.1016/j.ceb.2014.04.004. PMID 24804566. Archived (PDF) from the original on 2017-09-21.
Nicodemi M, Panning B, Prisco A (May 2008). "A thermodynamic switch for chromosome colocalization". Genetics. 179 (1): 717–21. arXiv:0809.4788. doi:10.1534/genetics.107.083154. PMC 2390650. PMID 18493085.
Bohn M, Heermann DW (2010). "Diffusion-driven looping provides a consistent framework for chromatin organization". PLOS ONE. 5 (8): e12218. Bibcode:2010PLoSO...512218B. doi:10.1371/journal.pone.0012218. PMC 2928267. PMID 20811620.
Poonperm, R; Takata, H; Hamano, T; Matsuda, A; Uchiyama, S; Hiraoka, Y; Fukui, K (1 July 2015). "Chromosome Scaffold is a Double-Stranded Assembly of Scaffold Proteins". Scientific Reports. 5: 11916. Bibcode:2015NatSR...511916P. doi:10.1038/srep11916. PMC 4487240. PMID 26132639.
Xing H, Vanderford NL, Sarge KD (November 2008). "The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action". Nat. Cell Biol. 10 (11): 1318–23. doi:10.1038/ncb1790. PMC 2577711. PMID 18931662.
Allfrey VG, Faulkner R, Mirsky AE (May 1964). "Acetylation and Methylation of Histones and Their Possible Role in the Regulation of RNA Synthesis". Proc. Natl. Acad. Sci. U.S.A. 51 (5): 786–94. Bibcode:1964PNAS...51..786A. doi:10.1073/pnas.51.5.786. PMC 300163. PMID 14172992.
Kaochar S, Tu BP (November 2012). "Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression". Trends Biochem. Sci. 37 (11): 477–83. doi:10.1016/j.tibs.2012.07.008. PMC 3482309. PMID 22944281.
De Vries M, Ramos L, Housein Z, De Boer P (May 2012). "Chromatin remodelling initiation during human spermiogenesis". Biol Open. 1 (5): 446–57. doi:10.1242/bio.2012844. PMC 3507207. PMID 23213436.
Murugesapillai D, McCauley MJ, Huo R, Nelson Holte MH, Stepanyants A, Maher LJ, Israeloff NE, Williams MC (August 2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ, Williams MC (February 2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Aleksandrov, Radoslav; Hristova, Rossitsa; Stoynov, Stoyno; Gospodinov, Anastas (2020-08-07). "The Chromatin Response to Double-Strand DNA Breaks and Their Repair". Cells. 9 (8): 1853. doi:10.3390/cells9081853. ISSN 2073-4409. PMC 7464352. PMID 32784607.
Miné-Hattab, Judith; Chiolo, Irene (2020-08-27). "Complex Chromatin Motions for DNA Repair". Frontiers in Genetics. 11: 800. doi:10.3389/fgene.2020.00800. ISSN 1664-8021. PMC 7481375. PMID 33061931.
Lamm, Noa; Rogers, Samuel; Cesare, Anthony J. (October 2021). "Chromatin mobility and relocation in DNA repair". Trends in Cell Biology. 31 (10): 843–855. doi:10.1016/j.tcb.2021.06.002. ISSN 0962-8924. PMID 34183232. S2CID 235672793.
Trotter, Kevin W.; Archer, Trevor K. (2012), Morse, Randall H. (ed.), "Assaying Chromatin Structure and Remodeling by Restriction Enzyme Accessibility", Chromatin Remodeling, Methods in Molecular Biology, vol. 833, Totowa, NJ: Humana Press, pp. 89–102, doi:10.1007/978-1-61779-477-3_6, ISBN 978-1-61779-476-6, PMC 3607496, PMID 22183589
Liu B, Yip RK, Zhou Z (2012). "Chromatin remodeling, DNA damage repair and aging". Curr. Genomics. 13 (7): 533–47. doi:10.2174/138920212803251373. PMC 3468886. PMID 23633913.
Sellou H, Lebeaupin T, Chapuis C, Smith R, Hegele A, Singh HR, Kozlowski M, Bultmann S, Ladurner AG, Timinszky G, Huet S (2016). "The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage". Mol. Biol. Cell. 27 (24): 3791–3799. doi:10.1091/mbc.E16-05-0269. PMC 5170603. PMID 27733626.
Haince JF, McDonald D, Rodrigue A, Déry U, Masson JY, Hendzel MJ, Poirier GG (2008). "PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites". J. Biol. Chem. 283 (2): 1197–208. doi:10.1074/jbc.M706734200. PMID 18025084.
Rogakou EP, Pilch DR, Orr AH, Ivanova VS, Bonner WM (1998). "DNA double-stranded breaks induce histone H2AX phosphorylation on serine 139". J. Biol. Chem. 273 (10): 5858–68. doi:10.1074/jbc.273.10.5858. PMID 9488723.
Mailand N, Bekker-Jensen S, Faustrup H, Melander F, Bartek J, Lukas C, Lukas J (2007). "RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins". Cell. 131 (5): 887–900. doi:10.1016/j.cell.2007.09.040. PMID 18001824. S2CID 14232192.
Luijsterburg MS, Acs K, Ackermann L, Wiegant WW, Bekker-Jensen S, Larsen DH, Khanna KK, van Attikum H, Mailand N, Dantuma NP (2012). "A new non-catalytic role for ubiquitin ligase RNF8 in unfolding higher-order chromatin structure". EMBO J. 31 (11): 2511–27. doi:10.1038/emboj.2012.104. PMC 3365417. PMID 22531782.
Van Buren G, Rashid A, Yang AD, et al. (August 2007). "The development and characterization of a human midgut carcinoid cell line". Clin. Cancer Res. 13 (16): 4704–12. doi:10.1158/1078-0432.CCR-06-2723. PMID 17699847.
Shidham VB, Galindo LM (1999). "Pheochromocytoma. Cytologic findings on intraoperative scrape smears in five cases". Acta Cytol. 43 (2): 207–13. doi:10.1159/000330978. PMID 10097711. S2CID 232277473.
Small, Eliza C.; Maryanski, Danielle N.; Rodriguez, Keli L.; Harvey, Kevin J.; Keogh, Michael-C.; Johnstone, Andrea L. (2021), Posch, Anton (ed.), "Chromatin Immunoprecipitation (ChIP) to Study DNA–Protein Interactions", Proteomic Profiling, Methods in Molecular Biology, vol. 2261, New York, NY: Springer US, pp. 323–343, doi:10.1007/978-1-0716-1186-9_20, ISBN 978-1-0716-1185-2, PMID 33420999, S2CID 231304041, retrieved 2022-10-24
Rossi, M.J; Kuntala, P.K; Lai, W.K.M; et al. (10 March 2021). "A high-resolution protein architecture of the budding yeast genome". Nature. 592 (7853): 309–314. Bibcode:2021Natur.592..309R. doi:10.1038/s41586-021-03314-8. PMC 8035251. PMID 33692541.
Giresi, Paul G.; Kim, Jonghwan; McDaniell, Ryan M.; Iyer, Vishwanath R.; Lieb, Jason D. (2007-06-01). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–885. doi:10.1101/gr.5533506. ISSN 1088-9051. PMC 1891346. PMID 17179217.
Galas, D. J.; Schmitz, A. (1978-09-01). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. ISSN 0305-1048. PMC 342238. PMID 212715.
Cui, Kairong; Zhao, Keji (2012-01-01). "Genome-Wide Approaches to Determining Nucleosome Occupancy in Metazoans Using MNase-Seq". Chromatin Remodeling. Methods in Molecular Biology. Vol. 833. pp. 413–419. doi:10.1007/978-1-61779-477-3_24. ISBN 978-1-61779-476-6. ISSN 1940-6029. PMC 3541821. PMID 22183607.
Buenrostro, Jason D.; Giresi, Paul G.; Zaba, Lisa C.; Chang, Howard Y.; Greenleaf, William J. (2013-12-01). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–1218. doi:10.1038/nmeth.2688. ISSN 1548-7105. PMC 3959825. PMID 24097267.
Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY (2016-05-06). "MNase titration reveals differences between nucleosome occupancy and chromatin accessibility". Nature Communications. 7: 11485. Bibcode:2016NatCo...711485M. doi:10.1038/ncomms11485. PMC 4859066. PMID 27151365.
Racko D, Benedetti F, Goundaroulis D, Stasiak A (2018). "Chromatin Loop Extrusion and Chromatin Unknotting". Polymers. 10 (10): 1126–1137. doi:10.3390/polym10101126. PMC 6403842. PMID 30961051.
Luijsterburg, Martijn S.; White, Malcolm F.; van Driel, Roel; Dame, Remus Th. (8 January 2009). "The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 43 (6): 393–418. doi:10.1080/10409230802528488. PMID 19037758. S2CID 85874882.
Sanosaka, Tsukasa; Okuno, Hironobu; Mizota, Noriko; Andoh-Noda, Tomoko; Sato, Miki; Tomooka, Ryo; Banno, Satoe; Kohyama, Jun; Okano, Hideyuki (2022-12-31). "Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells". Scientific Reports. 12 (1): 22648. Bibcode:2022NatSR..1222648S. doi:10.1038/s41598-022-27293-6. ISSN 2045-2322. PMC 9805427. PMID 36587182.

ncbi.nlm.nih.gov

Monday, Tanmoy (July 2010). "Characterization of the RNA content of chromatin". Genome Res. 20 (7): 899–907. doi:10.1101/gr.103473.109. PMC 2892091. PMID 20404130.
Hansen, Jeffrey (March 2012). "Human mitotic chromosome structure: what happened to the 30-nm fibre?". The EMBO Journal. 31 (7): 1621–1623. doi:10.1038/emboj.2012.66. PMC 3321215. PMID 22415369.
Neidle, Stephen (January 2021). "Beyond the double helix: DNA structural diversity and the PDB". Journal of Biological Chemistry. 296: 100553. doi:10.1016/j.jbc.2021.100553. PMC 8063756. PMID 33744292.
Minchin, Steve; Lodge, Julia (2019-10-16). "Understanding biochemistry: structure and function of nucleic acids". Essays in Biochemistry. 63 (4): 433–456. doi:10.1042/EBC20180038. ISSN 0071-1365. PMC 6822018. PMID 31652314.
Robinson DJ; Fairall L; Huynh VA; Rhodes D. (April 2006). "EM measurements define the dimensions of the "30-nm" chromatin fiber: Evidence for a compact, interdigitated structure". Proceedings of the National Academy of Sciences of the United States of America. 103 (17): 6506–11. Bibcode:2006PNAS..103.6506R. doi:10.1073/pnas.0601212103. PMC 1436021. PMID 16617109.
Wong H, Victor JM, Mozziconacci J (September 2007). Chen P (ed.). "An All-Atom Model of the Chromatin Fiber Containing Linker Histones Reveals a Versatile Structure Tuned by the Nucleosomal Repeat Length". PLoS ONE. 2 (9): e877. Bibcode:2007PLoSO...2..877W. doi:10.1371/journal.pone.0000877. PMC 1963316. PMID 17849006.
Fudenberg G, Abdennur N, Imakaev M, Goloborodko A, Mirny LA (2017). "Emerging Evidence of Chromosome Folding by Loop Extrusion". Cold Spring Harbor Symposia on Quantitative Biology. 82: 45–55. doi:10.1101/sqb.2017.82.034710. PMC 6512960. PMID 29728444.
Kadauke S, Blobel GA (2009). "Chromatin loops in gene regulation". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1789 (1): 17–25. doi:10.1016/j.bbagrm.2008.07.002. PMC 2638769. PMID 18675948.
Busslinger, Georg A.; Stocsits, Roman R.; van der Lelij, Petra; Axelsson, Elin; Tedeschi, Antonio; Galjart, Niels; Peters, Jan-Michael (April 2017). "Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl". Nature. 544 (7651): 503–507. doi:10.1038/nature22063. ISSN 0028-0836. PMC 6080695. PMID 28424523.
Oh HJ, Aguilar R, Kesner B, Lee HG, Kriz AJ, Chu HP, Lee JT (2021). "Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops". Cell. 184 (25): 6157–6173. doi:10.1016/j.cell.2021.11.012. ISSN 0092-8674. PMC 8671370. PMID 34856126.
Nicodemi M, Panning B, Prisco A (May 2008). "A thermodynamic switch for chromosome colocalization". Genetics. 179 (1): 717–21. arXiv:0809.4788. doi:10.1534/genetics.107.083154. PMC 2390650. PMID 18493085.
Bohn M, Heermann DW (2010). "Diffusion-driven looping provides a consistent framework for chromatin organization". PLOS ONE. 5 (8): e12218. Bibcode:2010PLoSO...512218B. doi:10.1371/journal.pone.0012218. PMC 2928267. PMID 20811620.
Poonperm, R; Takata, H; Hamano, T; Matsuda, A; Uchiyama, S; Hiraoka, Y; Fukui, K (1 July 2015). "Chromosome Scaffold is a Double-Stranded Assembly of Scaffold Proteins". Scientific Reports. 5: 11916. Bibcode:2015NatSR...511916P. doi:10.1038/srep11916. PMC 4487240. PMID 26132639.
Xing H, Vanderford NL, Sarge KD (November 2008). "The TBP-PP2A mitotic complex bookmarks genes by preventing condensin action". Nat. Cell Biol. 10 (11): 1318–23. doi:10.1038/ncb1790. PMC 2577711. PMID 18931662.
Allfrey VG, Faulkner R, Mirsky AE (May 1964). "Acetylation and Methylation of Histones and Their Possible Role in the Regulation of RNA Synthesis". Proc. Natl. Acad. Sci. U.S.A. 51 (5): 786–94. Bibcode:1964PNAS...51..786A. doi:10.1073/pnas.51.5.786. PMC 300163. PMID 14172992.
Kaochar S, Tu BP (November 2012). "Gatekeepers of chromatin: Small metabolites elicit big changes in gene expression". Trends Biochem. Sci. 37 (11): 477–83. doi:10.1016/j.tibs.2012.07.008. PMC 3482309. PMID 22944281.
De Vries M, Ramos L, Housein Z, De Boer P (May 2012). "Chromatin remodelling initiation during human spermiogenesis". Biol Open. 1 (5): 446–57. doi:10.1242/bio.2012844. PMC 3507207. PMID 23213436.
Murugesapillai D, McCauley MJ, Huo R, Nelson Holte MH, Stepanyants A, Maher LJ, Israeloff NE, Williams MC (August 2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ, Williams MC (February 2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Aleksandrov, Radoslav; Hristova, Rossitsa; Stoynov, Stoyno; Gospodinov, Anastas (2020-08-07). "The Chromatin Response to Double-Strand DNA Breaks and Their Repair". Cells. 9 (8): 1853. doi:10.3390/cells9081853. ISSN 2073-4409. PMC 7464352. PMID 32784607.
Miné-Hattab, Judith; Chiolo, Irene (2020-08-27). "Complex Chromatin Motions for DNA Repair". Frontiers in Genetics. 11: 800. doi:10.3389/fgene.2020.00800. ISSN 1664-8021. PMC 7481375. PMID 33061931.
Trotter, Kevin W.; Archer, Trevor K. (2012), Morse, Randall H. (ed.), "Assaying Chromatin Structure and Remodeling by Restriction Enzyme Accessibility", Chromatin Remodeling, Methods in Molecular Biology, vol. 833, Totowa, NJ: Humana Press, pp. 89–102, doi:10.1007/978-1-61779-477-3_6, ISBN 978-1-61779-476-6, PMC 3607496, PMID 22183589
Liu B, Yip RK, Zhou Z (2012). "Chromatin remodeling, DNA damage repair and aging". Curr. Genomics. 13 (7): 533–47. doi:10.2174/138920212803251373. PMC 3468886. PMID 23633913.
Sellou H, Lebeaupin T, Chapuis C, Smith R, Hegele A, Singh HR, Kozlowski M, Bultmann S, Ladurner AG, Timinszky G, Huet S (2016). "The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage". Mol. Biol. Cell. 27 (24): 3791–3799. doi:10.1091/mbc.E16-05-0269. PMC 5170603. PMID 27733626.
Luijsterburg MS, Acs K, Ackermann L, Wiegant WW, Bekker-Jensen S, Larsen DH, Khanna KK, van Attikum H, Mailand N, Dantuma NP (2012). "A new non-catalytic role for ubiquitin ligase RNF8 in unfolding higher-order chromatin structure". EMBO J. 31 (11): 2511–27. doi:10.1038/emboj.2012.104. PMC 3365417. PMID 22531782.
Rossi, M.J; Kuntala, P.K; Lai, W.K.M; et al. (10 March 2021). "A high-resolution protein architecture of the budding yeast genome". Nature. 592 (7853): 309–314. Bibcode:2021Natur.592..309R. doi:10.1038/s41586-021-03314-8. PMC 8035251. PMID 33692541.
Giresi, Paul G.; Kim, Jonghwan; McDaniell, Ryan M.; Iyer, Vishwanath R.; Lieb, Jason D. (2007-06-01). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–885. doi:10.1101/gr.5533506. ISSN 1088-9051. PMC 1891346. PMID 17179217.
Galas, D. J.; Schmitz, A. (1978-09-01). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. ISSN 0305-1048. PMC 342238. PMID 212715.
Cui, Kairong; Zhao, Keji (2012-01-01). "Genome-Wide Approaches to Determining Nucleosome Occupancy in Metazoans Using MNase-Seq". Chromatin Remodeling. Methods in Molecular Biology. Vol. 833. pp. 413–419. doi:10.1007/978-1-61779-477-3_24. ISBN 978-1-61779-476-6. ISSN 1940-6029. PMC 3541821. PMID 22183607.
Buenrostro, Jason D.; Giresi, Paul G.; Zaba, Lisa C.; Chang, Howard Y.; Greenleaf, William J. (2013-12-01). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–1218. doi:10.1038/nmeth.2688. ISSN 1548-7105. PMC 3959825. PMID 24097267.
Mieczkowski J, Cook A, Bowman SK, Mueller B, Alver BH, Kundu S, Deaton AM, Urban JA, Larschan E, Park PJ, Kingston RE, Tolstorukov MY (2016-05-06). "MNase titration reveals differences between nucleosome occupancy and chromatin accessibility". Nature Communications. 7: 11485. Bibcode:2016NatCo...711485M. doi:10.1038/ncomms11485. PMC 4859066. PMID 27151365.
Racko D, Benedetti F, Goundaroulis D, Stasiak A (2018). "Chromatin Loop Extrusion and Chromatin Unknotting". Polymers. 10 (10): 1126–1137. doi:10.3390/polym10101126. PMC 6403842. PMID 30961051.
Sanosaka, Tsukasa; Okuno, Hironobu; Mizota, Noriko; Andoh-Noda, Tomoko; Sato, Miki; Tomooka, Ryo; Banno, Satoe; Kohyama, Jun; Okano, Hideyuki (2022-12-31). "Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells". Scientific Reports. 12 (1): 22648. Bibcode:2022NatSR..1222648S. doi:10.1038/s41598-022-27293-6. ISSN 2045-2322. PMC 9805427. PMID 36587182.

portlandpress.com

Minchin, Steve; Lodge, Julia (2019-10-16). "Understanding biochemistry: structure and function of nucleic acids". Essays in Biochemistry. 63 (4): 433–456. doi:10.1042/EBC20180038. ISSN 0071-1365. PMC 6822018. PMID 31652314.

science.org

Davidson, Iain F.; Bauer, Benedikt; Goetz, Daniela; Tang, Wen; Wutz, Gordana; Peters, Jan-Michael (2019-12-13). "DNA loop extrusion by human cohesin". Science. 366 (6471): 1338–1345. doi:10.1126/science.aaz3418. ISSN 0036-8075.

semanticscholar.org

api.semanticscholar.org

Dame, R.T. (May 2005). "The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin". Molecular Microbiology. 56 (4): 858–870. doi:10.1111/j.1365-2958.2005.04598.x. PMID 15853876. S2CID 26965112.
Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (April 2006). "A bivalent chromatin structure marks key developmental genes in embryonic stem cells". Cell. 125 (2): 315–26. doi:10.1016/j.cell.2006.02.041. ISSN 0092-8674. PMID 16630819. S2CID 9993008.
Lamm, Noa; Rogers, Samuel; Cesare, Anthony J. (October 2021). "Chromatin mobility and relocation in DNA repair". Trends in Cell Biology. 31 (10): 843–855. doi:10.1016/j.tcb.2021.06.002. ISSN 0962-8924. PMID 34183232. S2CID 235672793.
Mailand N, Bekker-Jensen S, Faustrup H, Melander F, Bartek J, Lukas C, Lukas J (2007). "RNF8 ubiquitylates histones at DNA double-strand breaks and promotes assembly of repair proteins". Cell. 131 (5): 887–900. doi:10.1016/j.cell.2007.09.040. PMID 18001824. S2CID 14232192.
Shidham VB, Galindo LM (1999). "Pheochromocytoma. Cytologic findings on intraoperative scrape smears in five cases". Acta Cytol. 43 (2): 207–13. doi:10.1159/000330978. PMID 10097711. S2CID 232277473.
Small, Eliza C.; Maryanski, Danielle N.; Rodriguez, Keli L.; Harvey, Kevin J.; Keogh, Michael-C.; Johnstone, Andrea L. (2021), Posch, Anton (ed.), "Chromatin Immunoprecipitation (ChIP) to Study DNA–Protein Interactions", Proteomic Profiling, Methods in Molecular Biology, vol. 2261, New York, NY: Springer US, pp. 323–343, doi:10.1007/978-1-0716-1186-9_20, ISBN 978-1-0716-1185-2, PMID 33420999, S2CID 231304041, retrieved 2022-10-24
Luijsterburg, Martijn S.; White, Malcolm F.; van Driel, Roel; Dame, Remus Th. (8 January 2009). "The Major Architects of Chromatin: Architectural Proteins in Bacteria, Archaea and Eukaryotes". Critical Reviews in Biochemistry and Molecular Biology. 43 (6): 393–418. doi:10.1080/10409230802528488. PMID 19037758. S2CID 85874882.

springer.com

link.springer.com

Small, Eliza C.; Maryanski, Danielle N.; Rodriguez, Keli L.; Harvey, Kevin J.; Keogh, Michael-C.; Johnstone, Andrea L. (2021), Posch, Anton (ed.), "Chromatin Immunoprecipitation (ChIP) to Study DNA–Protein Interactions", Proteomic Profiling, Methods in Molecular Biology, vol. 2261, New York, NY: Springer US, pp. 323–343, doi:10.1007/978-1-0716-1186-9_20, ISBN 978-1-0716-1185-2, PMID 33420999, S2CID 231304041, retrieved 2022-10-24

web.archive.org

Nicodemi M, Pombo A (June 2014). "Models of chromosome structure" (PDF). Curr. Opin. Cell Biol. 28: 90–5. doi:10.1016/j.ceb.2014.04.004. PMID 24804566. Archived (PDF) from the original on 2017-09-21.

worldcat.org

search.worldcat.org

Bernstein BE, Mikkelsen TS, Xie X, Kamal M, Huebert DJ, Cuff J, Fry B, Meissner A, Wernig M, Plath K, Jaenisch R, Wagschal A, Feil R, Schreiber SL, Lander ES (April 2006). "A bivalent chromatin structure marks key developmental genes in embryonic stem cells". Cell. 125 (2): 315–26. doi:10.1016/j.cell.2006.02.041. ISSN 0092-8674. PMID 16630819. S2CID 9993008.
Minchin, Steve; Lodge, Julia (2019-10-16). "Understanding biochemistry: structure and function of nucleic acids". Essays in Biochemistry. 63 (4): 433–456. doi:10.1042/EBC20180038. ISSN 0071-1365. PMC 6822018. PMID 31652314.
Davidson, Iain F.; Bauer, Benedikt; Goetz, Daniela; Tang, Wen; Wutz, Gordana; Peters, Jan-Michael (2019-12-13). "DNA loop extrusion by human cohesin". Science. 366 (6471): 1338–1345. doi:10.1126/science.aaz3418. ISSN 0036-8075.
Busslinger, Georg A.; Stocsits, Roman R.; van der Lelij, Petra; Axelsson, Elin; Tedeschi, Antonio; Galjart, Niels; Peters, Jan-Michael (April 2017). "Cohesin is positioned in mammalian genomes by transcription, CTCF and Wapl". Nature. 544 (7651): 503–507. doi:10.1038/nature22063. ISSN 0028-0836. PMC 6080695. PMID 28424523.
Oh HJ, Aguilar R, Kesner B, Lee HG, Kriz AJ, Chu HP, Lee JT (2021). "Jpx RNA regulates CTCF anchor site selection and formation of chromosome loops". Cell. 184 (25): 6157–6173. doi:10.1016/j.cell.2021.11.012. ISSN 0092-8674. PMC 8671370. PMID 34856126.
Aleksandrov, Radoslav; Hristova, Rossitsa; Stoynov, Stoyno; Gospodinov, Anastas (2020-08-07). "The Chromatin Response to Double-Strand DNA Breaks and Their Repair". Cells. 9 (8): 1853. doi:10.3390/cells9081853. ISSN 2073-4409. PMC 7464352. PMID 32784607.
Miné-Hattab, Judith; Chiolo, Irene (2020-08-27). "Complex Chromatin Motions for DNA Repair". Frontiers in Genetics. 11: 800. doi:10.3389/fgene.2020.00800. ISSN 1664-8021. PMC 7481375. PMID 33061931.
Lamm, Noa; Rogers, Samuel; Cesare, Anthony J. (October 2021). "Chromatin mobility and relocation in DNA repair". Trends in Cell Biology. 31 (10): 843–855. doi:10.1016/j.tcb.2021.06.002. ISSN 0962-8924. PMID 34183232. S2CID 235672793.
Giresi, Paul G.; Kim, Jonghwan; McDaniell, Ryan M.; Iyer, Vishwanath R.; Lieb, Jason D. (2007-06-01). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–885. doi:10.1101/gr.5533506. ISSN 1088-9051. PMC 1891346. PMID 17179217.
Galas, D. J.; Schmitz, A. (1978-09-01). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. ISSN 0305-1048. PMC 342238. PMID 212715.
Cui, Kairong; Zhao, Keji (2012-01-01). "Genome-Wide Approaches to Determining Nucleosome Occupancy in Metazoans Using MNase-Seq". Chromatin Remodeling. Methods in Molecular Biology. Vol. 833. pp. 413–419. doi:10.1007/978-1-61779-477-3_24. ISBN 978-1-61779-476-6. ISSN 1940-6029. PMC 3541821. PMID 22183607.
Buenrostro, Jason D.; Giresi, Paul G.; Zaba, Lisa C.; Chang, Howard Y.; Greenleaf, William J. (2013-12-01). "Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position". Nature Methods. 10 (12): 1213–1218. doi:10.1038/nmeth.2688. ISSN 1548-7105. PMC 3959825. PMID 24097267.
Sanosaka, Tsukasa; Okuno, Hironobu; Mizota, Noriko; Andoh-Noda, Tomoko; Sato, Miki; Tomooka, Ryo; Banno, Satoe; Kohyama, Jun; Okano, Hideyuki (2022-12-31). "Chromatin remodeler CHD7 targets active enhancer region to regulate cell type-specific gene expression in human neural crest cells". Scientific Reports. 12 (1): 22648. Bibcode:2022NatSR..1222648S. doi:10.1038/s41598-022-27293-6. ISSN 2045-2322. PMC 9805427. PMID 36587182.