Chromatin remodeling (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Chromatin remodeling" in English language version.

refsWebsite

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85nih.gov

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55doi.org

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21worldcat.org

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12semanticscholar.org

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5harvard.edu

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3nature.com

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2science.org

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2web.archive.org

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2fda.gov

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2sciencedirect.com

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1cell.com

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1psu.edu

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1cdnsciencepub.com

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1tandfonline.com

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1aacrjournals.org

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1annualreviews.org

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aacrjournals.org

clincancerres.aacrjournals.org

Richon VM, O'Brien JP (2002). "Histone deacetylase inhibitors: a new class of potential therapeutic agents for cancer treatment" (PDF). Clinical Cancer Research. 8 (3): 662–4. PMID 11895892.

annualreviews.org

Clapier CR, Cairns BR (2009). "The biology of chromatin remodeling complexes". Annual Review of Biochemistry. 78: 273–304. doi:10.1146/annurev.biochem.77.062706.153223. PMID 19355820.

cdnsciencepub.com

Benevolenskaya EV (August 2007). "Histone H3K4 demethylases are essential in development and differentiation". Biochemistry and Cell Biology. 85 (4): 435–43. doi:10.1139/o07-057. PMID 17713579.

cell.com

Wang GG, Allis CD, Chi P (September 2007). "Chromatin remodeling and cancer, Part I: Covalent histone modifications". Trends in Molecular Medicine. 13 (9): 363–72. doi:10.1016/j.molmed.2007.07.003. PMID 17822958.

doi.org

Teif VB, Rippe K (September 2009). "Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities". Nucleic Acids Research. 37 (17): 5641–55. doi:10.1093/nar/gkp610. PMC 2761276. PMID 19625488.
Boyer (2009). "The chromatin signature of pluripotent cells". Stembook. doi:10.3824/stembook.1.45.1. PMID 20614601.
Wang GG, Allis CD, Chi P (September 2007). "Chromatin remodeling and cancer, Part I: Covalent histone modifications". Trends in Molecular Medicine. 13 (9): 363–72. doi:10.1016/j.molmed.2007.07.003. PMID 17822958.
Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ (March 2009). "Determination of enriched histone modifications in non-genic portions of the human genome". BMC Genomics. 10: 143. doi:10.1186/1471-2164-10-143. PMC 2667539. PMID 19335899.
Hublitz P, Albert M, Peters A (28 April 2009). "Mechanisms of Transcriptional Repression by Histone Lysine Methylation". The International Journal of Developmental Biology. 10 (1387): 335–354. doi:10.1387/ijdb.082717ph. ISSN 1696-3547. PMID 19412890.
Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, Khochbin S, Ren B, Zhao Y (September 2011). "Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification". Cell. 146 (6): 1016–28. doi:10.1016/j.cell.2011.08.008. PMC 3176443. PMID 21925322.
Jenuwein T, Allis CD (August 2001). "Translating the histone code". Science. 293 (5532): 1074–80. CiteSeerX 10.1.1.453.900. doi:10.1126/science.1063127. PMID 11498575. S2CID 1883924.
Benevolenskaya EV (August 2007). "Histone H3K4 demethylases are essential in development and differentiation". Biochemistry and Cell Biology. 85 (4): 435–43. doi:10.1139/o07-057. PMID 17713579.
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (May 2007). "High-resolution profiling of histone methylations in the human genome". Cell. 129 (4): 823–37. doi:10.1016/j.cell.2007.05.009. PMID 17512414. S2CID 6326093.
Steger DJ, Lefterova MI, Ying L, Stonestrom AJ, Schupp M, Zhuo D, Vakoc AL, Kim JE, Chen J, Lazar MA, Blobel GA, Vakoc CR (April 2008). "DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells". Molecular and Cellular Biology. 28 (8): 2825–39. doi:10.1128/MCB.02076-07. PMC 2293113. PMID 18285465.
Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I (June 2007). "The landscape of histone modifications across 1% of the human genome in five human cell lines". Genome Research. 17 (6): 691–707. doi:10.1101/gr.5704207. PMC 1891331. PMID 17567990.
Wang GG, Allis CD, Chi P (September 2007). "Chromatin remodeling and cancer, Part II: ATP-dependent chromatin remodeling". Trends in Molecular Medicine. 13 (9): 373–80. doi:10.1016/j.molmed.2007.07.004. PMC 4337864. PMID 17822959.
Saha A, Wittmeyer J, Cairns BR (June 2006). "Chromatin remodelling: the industrial revolution of DNA around histones". Nature Reviews Molecular Cell Biology. 7 (6): 437–47. doi:10.1038/nrm1945. PMID 16723979. S2CID 6180120.
Vignali, M.; Hassan, A. H.; Neely, K. E.; Workman, J. L. (2000-03-15). "ATP-Dependent Chromatin-Remodeling Complexes". Molecular and Cellular Biology. 20 (6): 1899–1910. doi:10.1128/mcb.20.6.1899-1910.2000. ISSN 0270-7306. PMC 110808. PMID 10688638.
Sellou H, Lebeaupin T, Chapuis C, Smith R, Hegele A, Singh HR, Kozlowski M, Bultmann S, Ladurner AG, Timinszky G, Huet S (2016). "The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage". Mol. Biol. Cell. 27 (24): 3791–3799. doi:10.1091/mbc.E16-05-0269. PMC 5170603. PMID 27733626.
Haince JF, McDonald D, Rodrigue A, Déry U, Masson JY, Hendzel MJ, Poirier GG (2008). "PARP1-dependent kinetics of recruitment of MRE11 and NBS1 proteins to multiple DNA damage sites". J. Biol. Chem. 283 (2): 1197–208. doi:10.1074/jbc.M706734200. PMID 18025084.
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Stucki M, Clapperton JA, Mohammad D, Yaffe MB, Smerdon SJ, Jackson SP (2005). "MDC1 directly binds phosphorylated histone H2AX to regulate cellular responses to DNA double-strand breaks". Cell. 123 (7): 1213–26. doi:10.1016/j.cell.2005.09.038. PMID 16377563.
Chapman JR, Jackson SP (2008). "Phospho-dependent interactions between NBS1 and MDC1 mediate chromatin retention of the MRN complex at sites of DNA damage". EMBO Rep. 9 (8): 795–801. doi:10.1038/embor.2008.103. PMC 2442910. PMID 18583988.
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Versteege I, Sévenet N, Lange J, Rousseau-Merck MF, Ambros P, Handgretinger R, Aurias A, Delattre O (July 1998). "Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer". Nature. 394 (6689): 203–6. Bibcode:1998Natur.394..203V. doi:10.1038/28212. PMID 9671307. S2CID 6019090.
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Medina PP, Romero OA, Kohno T, Montuenga LM, Pio R, Yokota J, Sanchez-Cespedes M (May 2008). "Frequent BRG1/SMARCA4-inactivating mutations in human lung cancer cell lines". Human Mutation. 29 (5): 617–22. doi:10.1002/humu.20730. PMID 18386774. S2CID 8596785.
Hodges HC, Stanton BZ, Cermakova K, Chang CY, Miller EL, Kirkland JG, Ku WL, Veverka V, Zhao K, Crabtree GR (January 2018). "Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers". Nature Structural & Molecular Biology. 25 (1): 61–72. doi:10.1038/s41594-017-0007-3. PMC 5909405. PMID 29323272.
Stanton BZ, Hodges C, Calarco JP, Braun SM, Ku WL, Kadoch C, Zhao K, Crabtree GR (February 2017). "Smarca4 ATPase mutations disrupt direct eviction of PRC1 from chromatin". Nature Genetics. 49 (2): 282–288. doi:10.1038/ng.3735. PMC 5373480. PMID 27941795.
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Liquori, Alessandro; Ibañez, Mariam; Sargas, Claudia; Sanz, Miguel Ángel; Barragán, Eva; Cervera, José (2020-03-08). "Acute Promyelocytic Leukemia: A Constellation of Molecular Events around a Single PML-RARA Fusion Gene". Cancers. 12 (3): 624. doi:10.3390/cancers12030624. ISSN 2072-6694. PMC 7139833. PMID 32182684.
Wolffe AP (May 2001). "Chromatin remodeling: why it is important in cancer". Oncogene. 20 (24): 2988–90. doi:10.1038/sj.onc.1204322. PMID 11420713.
Tu, William B.; Helander, Sara; Pilstål, Robert; Hickman, K. Ashley; Lourenco, Corey; Jurisica, Igor; Raught, Brian; Wallner, Björn; Sunnerhagen, Maria; Penn, Linda Z. (May 2015). "Myc and its interactors take shape". Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. 1849 (5): 469–483. doi:10.1016/j.bbagrm.2014.06.002. ISSN 0006-3002. PMID 24933113.
Marks PA, Dokmanovic M (December 2005). "Histone deacetylase inhibitors: discovery and development as anticancer agents". Expert Opinion on Investigational Drugs. 14 (12): 1497–511. doi:10.1517/13543784.14.12.1497. PMID 16307490. S2CID 1235026.
Richon VM, Sandhoff TW, Rifkind RA, Marks PA (August 2000). "Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation". Proceedings of the National Academy of Sciences of the United States of America. 97 (18): 10014–9. Bibcode:2000PNAS...9710014R. doi:10.1073/pnas.180316197. PMC 27656. PMID 10954755.
Zhang Z, Yamashita H, Toyama T, Sugiura H, Ando Y, Mita K, Hamaguchi M, Hara Y, Kobayashi S, Iwase H (November 2005). "Quantitation of HDAC1 mRNA expression in invasive carcinoma of the breast*". Breast Cancer Research and Treatment. 94 (1): 11–6. doi:10.1007/s10549-005-6001-1. PMID 16172792. S2CID 27550683.
Munshi, Anupama; Tanaka, Toshimitsu; Hobbs, Marvette L.; Tucker, Susan L.; Richon, Victoria M.; Meyn, Raymond E. (August 2006). "Vorinostat, a histone deacetylase inhibitor, enhances the response of human tumor cells to ionizing radiation through prolongation of gamma-H2AX foci". Molecular Cancer Therapeutics. 5 (8): 1967–1974. doi:10.1158/1535-7163.MCT-06-0022. ISSN 1535-7163. PMID 16928817. S2CID 26874948.
VanderMolen, Karen M.; McCulloch, William; Pearce, Cedric J.; Oberlies, Nicholas H. (August 2011). "Romidepsin (Istodax, NSC 630176, FR901228, FK228, depsipeptide): a natural product recently approved for cutaneous T-cell lymphoma". The Journal of Antibiotics. 64 (8): 525–531. doi:10.1038/ja.2011.35. ISSN 1881-1469. PMC 3163831. PMID 21587264.
Dowden J, Hong W, Parry RV, Pike RA, Ward SG (April 2010). "Toward the development of potent and selective bisubstrate inhibitors of protein arginine methyltransferases". Bioorganic & Medicinal Chemistry Letters. 20 (7): 2103–5. doi:10.1016/j.bmcl.2010.02.069. PMID 20219369.
Wong, Lee H.; McGhie, James D.; Sim, Marcus; Anderson, Melissa A.; Ahn, Soyeon; Hannan, Ross D.; George, Amee J.; Morgan, Kylie A.; Mann, Jeffrey R.; Choo, K. H. Andy (March 2010). "ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells". Genome Research. 20 (3): 351–360. doi:10.1101/gr.101477.109. ISSN 1549-5469. PMC 2840985. PMID 20110566.
Clapier CR, Cairns BR (2009). "The biology of chromatin remodeling complexes". Annual Review of Biochemistry. 78: 273–304. doi:10.1146/annurev.biochem.77.062706.153223. PMID 19355820.
Parry, Aled John; Narita, Masashi (2016). "Old cells, new tricks: chromatin structure in senescence". Mammalian Genome. 27 (7–8): 320–331. doi:10.1007/s00335-016-9628-9. ISSN 0938-8990. PMC 4935760. PMID 27021489.
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Li, Xueping; Ding, Dong; Yao, Jun; Zhou, Bin; Shen, Ting; Qi, Yun; Ni, Ting; Wei, Gang (2019-07-15). "Chromatin remodeling factor BAZ1A regulates cellular senescence in both cancer and normal cells". Life Sciences. 229: 225–232. doi:10.1016/j.lfs.2019.05.023. ISSN 1879-0631. PMID 31085244. S2CID 155090903.
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fda.gov

accessdata.fda.gov

"Zolinza® (vorinostat) Capsules. Full Prescribing Information" (PDF). Food and Drug Administration (FDA). Archived from the original (PDF) on 20 January 2022. Retrieved 9 February 2023.
"ISTODAX® (romidepsin) for injection, for intravenous use. Full prescribing information" (PDF). Food and Drug Administration (FDA). Archived from the original (PDF) on 25 January 2022. Retrieved 9 February 2023.

harvard.edu

ui.adsabs.harvard.edu

Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Versteege I, Sévenet N, Lange J, Rousseau-Merck MF, Ambros P, Handgretinger R, Aurias A, Delattre O (July 1998). "Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer". Nature. 394 (6689): 203–6. Bibcode:1998Natur.394..203V. doi:10.1038/28212. PMID 9671307. S2CID 6019090.
Shain AH, Pollack JR (2013). "The spectrum of SWI/SNF mutations, ubiquitous in human cancers". PLOS ONE. 8 (1): e55119. Bibcode:2013PLoSO...855119S. doi:10.1371/journal.pone.0055119. PMC 3552954. PMID 23355908.
Richon VM, Sandhoff TW, Rifkind RA, Marks PA (August 2000). "Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation". Proceedings of the National Academy of Sciences of the United States of America. 97 (18): 10014–9. Bibcode:2000PNAS...9710014R. doi:10.1073/pnas.180316197. PMC 27656. PMID 10954755.
Wilson, V. L.; Jones, P. A. (1983-06-03). "DNA methylation decreases in aging but not in immortal cells". Science. 220 (4601): 1055–1057. Bibcode:1983Sci...220.1055W. doi:10.1126/science.6844925. ISSN 0036-8075. PMID 6844925.

nature.com

Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Saha A, Wittmeyer J, Cairns BR (June 2006). "Chromatin remodelling: the industrial revolution of DNA around histones". Nature Reviews Molecular Cell Biology. 7 (6): 437–47. doi:10.1038/nrm1945. PMID 16723979. S2CID 6180120.
Versteege I, Sévenet N, Lange J, Rousseau-Merck MF, Ambros P, Handgretinger R, Aurias A, Delattre O (July 1998). "Truncating mutations of hSNF5/INI1 in aggressive paediatric cancer". Nature. 394 (6689): 203–6. Bibcode:1998Natur.394..203V. doi:10.1038/28212. PMID 9671307. S2CID 6019090.

nih.gov

pubmed.ncbi.nlm.nih.gov

Teif VB, Rippe K (September 2009). "Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities". Nucleic Acids Research. 37 (17): 5641–55. doi:10.1093/nar/gkp610. PMC 2761276. PMID 19625488.
Boyer (2009). "The chromatin signature of pluripotent cells". Stembook. doi:10.3824/stembook.1.45.1. PMID 20614601.
Wang GG, Allis CD, Chi P (September 2007). "Chromatin remodeling and cancer, Part I: Covalent histone modifications". Trends in Molecular Medicine. 13 (9): 363–72. doi:10.1016/j.molmed.2007.07.003. PMID 17822958.
Strahl BD, Allis CD (January 2000). "The language of covalent histone modifications". Nature. 403 (6765): 41–5. Bibcode:2000Natur.403...41S. doi:10.1038/47412. PMID 10638745. S2CID 4418993.
Rosenfeld JA, Wang Z, Schones DE, Zhao K, DeSalle R, Zhang MQ (March 2009). "Determination of enriched histone modifications in non-genic portions of the human genome". BMC Genomics. 10: 143. doi:10.1186/1471-2164-10-143. PMC 2667539. PMID 19335899.
Hublitz P, Albert M, Peters A (28 April 2009). "Mechanisms of Transcriptional Repression by Histone Lysine Methylation". The International Journal of Developmental Biology. 10 (1387): 335–354. doi:10.1387/ijdb.082717ph. ISSN 1696-3547. PMID 19412890.
Tan M, Luo H, Lee S, Jin F, Yang JS, Montellier E, Buchou T, Cheng Z, Rousseaux S, Rajagopal N, Lu Z, Ye Z, Zhu Q, Wysocka J, Ye Y, Khochbin S, Ren B, Zhao Y (September 2011). "Identification of 67 histone marks and histone lysine crotonylation as a new type of histone modification". Cell. 146 (6): 1016–28. doi:10.1016/j.cell.2011.08.008. PMC 3176443. PMID 21925322.
Jenuwein T, Allis CD (August 2001). "Translating the histone code". Science. 293 (5532): 1074–80. CiteSeerX 10.1.1.453.900. doi:10.1126/science.1063127. PMID 11498575. S2CID 1883924.
Benevolenskaya EV (August 2007). "Histone H3K4 demethylases are essential in development and differentiation". Biochemistry and Cell Biology. 85 (4): 435–43. doi:10.1139/o07-057. PMID 17713579.
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K (May 2007). "High-resolution profiling of histone methylations in the human genome". Cell. 129 (4): 823–37. doi:10.1016/j.cell.2007.05.009. PMID 17512414. S2CID 6326093.
Steger DJ, Lefterova MI, Ying L, Stonestrom AJ, Schupp M, Zhuo D, Vakoc AL, Kim JE, Chen J, Lazar MA, Blobel GA, Vakoc CR (April 2008). "DOT1L/KMT4 recruitment and H3K79 methylation are ubiquitously coupled with gene transcription in mammalian cells". Molecular and Cellular Biology. 28 (8): 2825–39. doi:10.1128/MCB.02076-07. PMC 2293113. PMID 18285465.
Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I (June 2007). "The landscape of histone modifications across 1% of the human genome in five human cell lines". Genome Research. 17 (6): 691–707. doi:10.1101/gr.5704207. PMC 1891331. PMID 17567990.
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springer.com

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web.archive.org

"Zolinza® (vorinostat) Capsules. Full Prescribing Information" (PDF). Food and Drug Administration (FDA). Archived from the original (PDF) on 20 January 2022. Retrieved 9 February 2023.
"ISTODAX® (romidepsin) for injection, for intravenous use. Full prescribing information" (PDF). Food and Drug Administration (FDA). Archived from the original (PDF) on 25 January 2022. Retrieved 9 February 2023.

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