Cis-regulatory element (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Cis-regulatory element" in English language version.

refsWebsite

Global rank English rank

34nih.gov

4^th place

22doi.org

2^nd place

3harvard.edu

18^th place

17^th place

3semanticscholar.org

11^th place

8^th place

2handle.net

102^nd place

76^th place

1caltech.edu

887^th place

714^th place

1books.google.com

3^rd place

1worldcat.org

5^th place

books.google.com

Choi S (17 May 2008). Introduction to Systems Biology. Springer Science & Business Media. p. 78. ISBN 978-1-59745-531-2.

caltech.edu

authors.library.caltech.edu

Ben-Tabou de-Leon S, Davidson EH (2007). "Gene regulation: gene control network in development" (PDF). Annu Rev Biophys Biomol Struct. 36: 191–212. doi:10.1146/annurev.biophys.35.040405.102002. PMID 17291181.

doi.org

Teif V.B. (2010). "Predicting Gene-Regulation Functions: Lessons from Temperate Bacteriophages". Biophysical Journal. 98 (7): 1247–56. Bibcode:2010BpJ....98.1247T. doi:10.1016/j.bpj.2009.11.046. PMC 2849075. PMID 20371324.
Ben-Tabou de-Leon S, Davidson EH (2007). "Gene regulation: gene control network in development" (PDF). Annu Rev Biophys Biomol Struct. 36: 191–212. doi:10.1146/annurev.biophys.35.040405.102002. PMID 17291181.
Jeziorska DM, Jordan KW, Vance KW (2009). "A systems biology approach to understanding cis-regulatory module function". Semin. Cell Dev. Biol. 20 (7): 856–862. doi:10.1016/j.semcdb.2009.07.007. PMID 19660565.
Butler JE, Kadonaga JT (October 2002). "The RNA polymerase II core promoter: a key component in the regulation of gene expression". Genes & Development. 16 (20): 2583–2592. doi:10.1101/gad.1026202. PMID 12381658.
Wittkopp PJ, Kalay G (December 2011). "Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence". Nature Reviews Genetics. 13 (1): 59–69. doi:10.1038/nrg3095. PMID 22143240. S2CID 13513643.
Melamed P, Yosefzun Y, et al. (2 March 2016). "Transcriptional enhancers: Transcription, function and flexibility". Transcription. 7 (1): 26–31. doi:10.1080/21541264.2015.1128517. PMC 4802784. PMID 26934309.
Li E, Davidson EH (2009). "Building Developmental Gene Regulatory Networks". Birth Defects Res. 87 (2): 123–130. doi:10.1002/bdrc.20152. PMC 2747644. PMID 19530131.
Aerts, S.; et al. (2003). "Computational detection of cis-regulatory modules". Bioinformatics. 19 (Suppl 2): ii5–14. doi:10.1093/bioinformatics/btg1052. PMID 14534164.
Wrzodek, Clemens; Schröder, Adrian; Dräger, Andreas; Wanke, Dierk; Berendzen, Kenneth W.; Kronfeld, Marcel; Harter, Klaus; Zell, Andreas (2010). "ModuleMaster: A new tool to decipher transcriptional regulatory networks". Biosystems. 99 (1). Ireland: Elsevier: 79–81. doi:10.1016/j.biosystems.2009.09.005. ISSN 0303-2647. PMID 19819296.
Parra RG, Rohr CO, Koile D, Perez-Castro C, Yankilevich P (2015). "INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction". Bioinformatics. 32 (8): 1229–31. doi:10.1093/bioinformatics/btv726. hdl:11336/37980. PMID 26656931.
Rohr CO, Parra RG, Yankilevich P, Perez-Castro C (2013). "INSECT: IN-silico SEarch for Co-occurring Transcription factors". Bioinformatics. 29 (22): 2852–8. doi:10.1093/bioinformatics/btt506. hdl:11336/12301. PMID 24008418.
Sinha S, Liang Y, Siggia E (2006). "Stubb: a program for discovery and analysis of cis-regulatory modules". Nucleic Acids Res. 34 (Web Server issue): W555–W559. doi:10.1093/nar/gkl224. PMC 1538799. PMID 16845069.
Chen X, Blanchette M (2007). "Comparing sequences without using alignments: application to HIV/SIV subtyping". BMC Bioinformatics. 8: 1–17. doi:10.1186/1471-2105-8-1. PMC 1766362. PMID 17199892.
Sharan R, Ben-Hur A, Loots GG, Ovcharenko I (2004). "CREME: Cis-Regulatory Module Explorer for the human genome". Nucleic Acids Res. 32 (Web Server issue): W253–W256. doi:10.1093/nar/gkh385. PMC 441523. PMID 15215390.
Bekaert M, Firth AE, Zhang Y, Gladyshev VN, Atkins JF, Baranov PV (January 2010). "Recode-2: new design, new search tools, and many more genes". Nucleic Acids Research. 38 (Database issue): D69–74. doi:10.1093/nar/gkp788. PMC 2808893. PMID 19783826.
Chung BY, Firth AE, Atkins JF (March 2010). "Frameshifting in alphaviruses: a diversity of 3' stimulatory structures". Journal of Molecular Biology. 397 (2): 448–456. doi:10.1016/j.jmb.2010.01.044. PMID 20114053.
Giedroc DP, Cornish PV (February 2009). "Frameshifting RNA pseudoknots: structure and mechanism". Virus Research. 139 (2): 193–208. doi:10.1016/j.virusres.2008.06.008. PMC 2670756. PMID 18621088.
Mokrejs M, Vopálenský V, Kolenaty O, Masek T, Feketová Z, Sekyrová P, Skaloudová B, Kríz V, Pospísek M (January 2006). "IRESite: the database of experimentally verified IRES structures (www.iresite.org)". Nucleic Acids Research. 34 (Database issue): D125–130. doi:10.1093/nar/gkj081. PMC 1347444. PMID 16381829.
Hentze MW, Kühn LC (August 1996). "Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress". Proceedings of the National Academy of Sciences of the United States of America. 93 (16): 8175–8182. Bibcode:1996PNAS...93.8175H. doi:10.1073/pnas.93.16.8175. PMC 38642. PMID 8710843.
Platt T (1986). "Transcription termination and the regulation of gene expression". Annual Review of Biochemistry. 55: 339–372. doi:10.1146/annurev.bi.55.070186.002011. PMID 3527045.
Breaker RR (March 2008). "Complex riboswitches". Science. 319 (5871): 1795–1797. Bibcode:2008Sci...319.1795B. doi:10.1126/science.1152621. PMID 18369140. S2CID 45588146.
Kortmann J, Narberhaus F (March 2012). "Bacterial RNA thermometers: molecular zippers and switches". Nature Reviews. Microbiology. 10 (4): 255–265. doi:10.1038/nrmicro2730. PMID 22421878. S2CID 29414695.

handle.net

hdl.handle.net

Parra RG, Rohr CO, Koile D, Perez-Castro C, Yankilevich P (2015). "INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction". Bioinformatics. 32 (8): 1229–31. doi:10.1093/bioinformatics/btv726. hdl:11336/37980. PMID 26656931.
Rohr CO, Parra RG, Yankilevich P, Perez-Castro C (2013). "INSECT: IN-silico SEarch for Co-occurring Transcription factors". Bioinformatics. 29 (22): 2852–8. doi:10.1093/bioinformatics/btt506. hdl:11336/12301. PMID 24008418.

harvard.edu

ui.adsabs.harvard.edu

Teif V.B. (2010). "Predicting Gene-Regulation Functions: Lessons from Temperate Bacteriophages". Biophysical Journal. 98 (7): 1247–56. Bibcode:2010BpJ....98.1247T. doi:10.1016/j.bpj.2009.11.046. PMC 2849075. PMID 20371324.
Hentze MW, Kühn LC (August 1996). "Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress". Proceedings of the National Academy of Sciences of the United States of America. 93 (16): 8175–8182. Bibcode:1996PNAS...93.8175H. doi:10.1073/pnas.93.16.8175. PMC 38642. PMID 8710843.
Breaker RR (March 2008). "Complex riboswitches". Science. 319 (5871): 1795–1797. Bibcode:2008Sci...319.1795B. doi:10.1126/science.1152621. PMID 18369140. S2CID 45588146.

nih.gov

pubmed.ncbi.nlm.nih.gov

Teif V.B. (2010). "Predicting Gene-Regulation Functions: Lessons from Temperate Bacteriophages". Biophysical Journal. 98 (7): 1247–56. Bibcode:2010BpJ....98.1247T. doi:10.1016/j.bpj.2009.11.046. PMC 2849075. PMID 20371324.
Ben-Tabou de-Leon S, Davidson EH (2007). "Gene regulation: gene control network in development" (PDF). Annu Rev Biophys Biomol Struct. 36: 191–212. doi:10.1146/annurev.biophys.35.040405.102002. PMID 17291181.
Jeziorska DM, Jordan KW, Vance KW (2009). "A systems biology approach to understanding cis-regulatory module function". Semin. Cell Dev. Biol. 20 (7): 856–862. doi:10.1016/j.semcdb.2009.07.007. PMID 19660565.
Butler JE, Kadonaga JT (October 2002). "The RNA polymerase II core promoter: a key component in the regulation of gene expression". Genes & Development. 16 (20): 2583–2592. doi:10.1101/gad.1026202. PMID 12381658.
Wittkopp PJ, Kalay G (December 2011). "Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence". Nature Reviews Genetics. 13 (1): 59–69. doi:10.1038/nrg3095. PMID 22143240. S2CID 13513643.
Melamed P, Yosefzun Y, et al. (2 March 2016). "Transcriptional enhancers: Transcription, function and flexibility". Transcription. 7 (1): 26–31. doi:10.1080/21541264.2015.1128517. PMC 4802784. PMID 26934309.
Li E, Davidson EH (2009). "Building Developmental Gene Regulatory Networks". Birth Defects Res. 87 (2): 123–130. doi:10.1002/bdrc.20152. PMC 2747644. PMID 19530131.
Aerts, S.; et al. (2003). "Computational detection of cis-regulatory modules". Bioinformatics. 19 (Suppl 2): ii5–14. doi:10.1093/bioinformatics/btg1052. PMID 14534164.
Wrzodek, Clemens; Schröder, Adrian; Dräger, Andreas; Wanke, Dierk; Berendzen, Kenneth W.; Kronfeld, Marcel; Harter, Klaus; Zell, Andreas (2010). "ModuleMaster: A new tool to decipher transcriptional regulatory networks". Biosystems. 99 (1). Ireland: Elsevier: 79–81. doi:10.1016/j.biosystems.2009.09.005. ISSN 0303-2647. PMID 19819296.
Parra RG, Rohr CO, Koile D, Perez-Castro C, Yankilevich P (2015). "INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction". Bioinformatics. 32 (8): 1229–31. doi:10.1093/bioinformatics/btv726. hdl:11336/37980. PMID 26656931.
Rohr CO, Parra RG, Yankilevich P, Perez-Castro C (2013). "INSECT: IN-silico SEarch for Co-occurring Transcription factors". Bioinformatics. 29 (22): 2852–8. doi:10.1093/bioinformatics/btt506. hdl:11336/12301. PMID 24008418.
Sinha S, Liang Y, Siggia E (2006). "Stubb: a program for discovery and analysis of cis-regulatory modules". Nucleic Acids Res. 34 (Web Server issue): W555–W559. doi:10.1093/nar/gkl224. PMC 1538799. PMID 16845069.
Chen X, Blanchette M (2007). "Comparing sequences without using alignments: application to HIV/SIV subtyping". BMC Bioinformatics. 8: 1–17. doi:10.1186/1471-2105-8-1. PMC 1766362. PMID 17199892.
Sharan R, Ben-Hur A, Loots GG, Ovcharenko I (2004). "CREME: Cis-Regulatory Module Explorer for the human genome". Nucleic Acids Res. 32 (Web Server issue): W253–W256. doi:10.1093/nar/gkh385. PMC 441523. PMID 15215390.
Bekaert M, Firth AE, Zhang Y, Gladyshev VN, Atkins JF, Baranov PV (January 2010). "Recode-2: new design, new search tools, and many more genes". Nucleic Acids Research. 38 (Database issue): D69–74. doi:10.1093/nar/gkp788. PMC 2808893. PMID 19783826.
Chung BY, Firth AE, Atkins JF (March 2010). "Frameshifting in alphaviruses: a diversity of 3' stimulatory structures". Journal of Molecular Biology. 397 (2): 448–456. doi:10.1016/j.jmb.2010.01.044. PMID 20114053.
Giedroc DP, Cornish PV (February 2009). "Frameshifting RNA pseudoknots: structure and mechanism". Virus Research. 139 (2): 193–208. doi:10.1016/j.virusres.2008.06.008. PMC 2670756. PMID 18621088.
Mokrejs M, Vopálenský V, Kolenaty O, Masek T, Feketová Z, Sekyrová P, Skaloudová B, Kríz V, Pospísek M (January 2006). "IRESite: the database of experimentally verified IRES structures (www.iresite.org)". Nucleic Acids Research. 34 (Database issue): D125–130. doi:10.1093/nar/gkj081. PMC 1347444. PMID 16381829.
Hentze MW, Kühn LC (August 1996). "Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress". Proceedings of the National Academy of Sciences of the United States of America. 93 (16): 8175–8182. Bibcode:1996PNAS...93.8175H. doi:10.1073/pnas.93.16.8175. PMC 38642. PMID 8710843.
Platt T (1986). "Transcription termination and the regulation of gene expression". Annual Review of Biochemistry. 55: 339–372. doi:10.1146/annurev.bi.55.070186.002011. PMID 3527045.
Breaker RR (March 2008). "Complex riboswitches". Science. 319 (5871): 1795–1797. Bibcode:2008Sci...319.1795B. doi:10.1126/science.1152621. PMID 18369140. S2CID 45588146.
Kortmann J, Narberhaus F (March 2012). "Bacterial RNA thermometers: molecular zippers and switches". Nature Reviews. Microbiology. 10 (4): 255–265. doi:10.1038/nrmicro2730. PMID 22421878. S2CID 29414695.
Walczak R, Westhof E, Carbon P, Krol A (April 1996). "A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs". RNA. 2 (4): 367–379. PMC 1369379. PMID 8634917.

ncbi.nlm.nih.gov

Teif V.B. (2010). "Predicting Gene-Regulation Functions: Lessons from Temperate Bacteriophages". Biophysical Journal. 98 (7): 1247–56. Bibcode:2010BpJ....98.1247T. doi:10.1016/j.bpj.2009.11.046. PMC 2849075. PMID 20371324.
Melamed P, Yosefzun Y, et al. (2 March 2016). "Transcriptional enhancers: Transcription, function and flexibility". Transcription. 7 (1): 26–31. doi:10.1080/21541264.2015.1128517. PMC 4802784. PMID 26934309.
Li E, Davidson EH (2009). "Building Developmental Gene Regulatory Networks". Birth Defects Res. 87 (2): 123–130. doi:10.1002/bdrc.20152. PMC 2747644. PMID 19530131.
Sinha S, Liang Y, Siggia E (2006). "Stubb: a program for discovery and analysis of cis-regulatory modules". Nucleic Acids Res. 34 (Web Server issue): W555–W559. doi:10.1093/nar/gkl224. PMC 1538799. PMID 16845069.
Chen X, Blanchette M (2007). "Comparing sequences without using alignments: application to HIV/SIV subtyping". BMC Bioinformatics. 8: 1–17. doi:10.1186/1471-2105-8-1. PMC 1766362. PMID 17199892.
Sharan R, Ben-Hur A, Loots GG, Ovcharenko I (2004). "CREME: Cis-Regulatory Module Explorer for the human genome". Nucleic Acids Res. 32 (Web Server issue): W253–W256. doi:10.1093/nar/gkh385. PMC 441523. PMID 15215390.
Bekaert M, Firth AE, Zhang Y, Gladyshev VN, Atkins JF, Baranov PV (January 2010). "Recode-2: new design, new search tools, and many more genes". Nucleic Acids Research. 38 (Database issue): D69–74. doi:10.1093/nar/gkp788. PMC 2808893. PMID 19783826.
Giedroc DP, Cornish PV (February 2009). "Frameshifting RNA pseudoknots: structure and mechanism". Virus Research. 139 (2): 193–208. doi:10.1016/j.virusres.2008.06.008. PMC 2670756. PMID 18621088.
Mokrejs M, Vopálenský V, Kolenaty O, Masek T, Feketová Z, Sekyrová P, Skaloudová B, Kríz V, Pospísek M (January 2006). "IRESite: the database of experimentally verified IRES structures (www.iresite.org)". Nucleic Acids Research. 34 (Database issue): D125–130. doi:10.1093/nar/gkj081. PMC 1347444. PMID 16381829.
Hentze MW, Kühn LC (August 1996). "Molecular control of vertebrate iron metabolism: mRNA-based regulatory circuits operated by iron, nitric oxide, and oxidative stress". Proceedings of the National Academy of Sciences of the United States of America. 93 (16): 8175–8182. Bibcode:1996PNAS...93.8175H. doi:10.1073/pnas.93.16.8175. PMC 38642. PMID 8710843.
Walczak R, Westhof E, Carbon P, Krol A (April 1996). "A novel RNA structural motif in the selenocysteine insertion element of eukaryotic selenoprotein mRNAs". RNA. 2 (4): 367–379. PMC 1369379. PMID 8634917.

semanticscholar.org

api.semanticscholar.org

Wittkopp PJ, Kalay G (December 2011). "Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence". Nature Reviews Genetics. 13 (1): 59–69. doi:10.1038/nrg3095. PMID 22143240. S2CID 13513643.
Breaker RR (March 2008). "Complex riboswitches". Science. 319 (5871): 1795–1797. Bibcode:2008Sci...319.1795B. doi:10.1126/science.1152621. PMID 18369140. S2CID 45588146.
Kortmann J, Narberhaus F (March 2012). "Bacterial RNA thermometers: molecular zippers and switches". Nature Reviews. Microbiology. 10 (4): 255–265. doi:10.1038/nrmicro2730. PMID 22421878. S2CID 29414695.

worldcat.org

Wrzodek, Clemens; Schröder, Adrian; Dräger, Andreas; Wanke, Dierk; Berendzen, Kenneth W.; Kronfeld, Marcel; Harter, Klaus; Zell, Andreas (2010). "ModuleMaster: A new tool to decipher transcriptional regulatory networks". Biosystems. 99 (1). Ireland: Elsevier: 79–81. doi:10.1016/j.biosystems.2009.09.005. ISSN 0303-2647. PMID 19819296.