Computational genomics (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Computational genomics" in English language version.

refsWebsite

Global rank English rank

19nih.gov

4^th place

12doi.org

2^nd place

1semanticscholar.org

11^th place

8^th place

1web.archive.org

1^st place

1mit.edu

415^th place

327^th place

1archive.org

6^th place

1computational-genomics.net

low place

1harvard.edu

18^th place

17^th place

archive.org

Brown TA (1999). Genomes. Wiley. ISBN 978-0-471-31618-3.

computational-genomics.net

Cristianini N, Hahn M (2006). Introduction to Computational Genomics. Cambridge University Press. ISBN 978-0-521-67191-0.

doi.org

Koonin EV (March 2001). "Computational genomics". Current Biology. 11 (5): R155–8. doi:10.1016/S0960-9822(01)00081-1. PMID 11267880. S2CID 17202180.
Wagner A (September 1997). "A computational genomics approach to the identification of gene networks". Nucleic Acids Research. 25 (18): 3594–604. doi:10.1093/nar/25.18.3594. PMC 146952. PMID 9278479.
Konstantinidis KT, Tiedje JM (2005). "Genomic insights that advance the species definition for prokaryotes". Proc Natl Acad Sci U S A. 102 (7): 2567–72. Bibcode:2005PNAS..102.2567K. doi:10.1073/pnas.0409727102. PMC 549018. PMID 15701695.
Ondov B, Treangen T, Melsted P, Mallonee A, Bergman N, Koren S, Phillippy A (2016). "Mash: fast genome and metagenome distance estimation using MinHash". Genome Biology. 17 (32): 14. doi:10.1186/s13059-016-0997-x. PMC 4915045. PMID 27323842.
Navarro-Muñoz J, Selem-Mojica N, Mullowney M, Kautsar S, Tryon J, Parkinson E, De Los Santos E, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Dias-Cappelini L, Goering A, Thomson R, Metcalf W, Kelleher N, Barona-Gomez F, Medema M (2020). "A computational framework to explore large-scale biosynthetic diversity". Nat Chem Biol. 16 (1): 60–68. doi:10.1038/s41589-019-0400-9. PMC 6917865. PMID 31768033.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". mSystems. 6 (5): e00937-21. bioRxiv 10.1101/2020.12.14.422671. doi:10.1128/msystems.00937-21. PMC 8547482. PMID 34581602.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". bioRxiv. 6 (5): e00937-21. doi:10.1101/2020.12.14.422671. PMC 8547482. PMID 34581602.
Kautsar, Satria A; van der Hooft, Justin J J; de Ridder, Dick; Medema, Marnix H (13 January 2021). "BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters". GigaScience. 10 (1): giaa154. doi:10.1093/gigascience/giaa154. PMC 7804863. PMID 33438731.
Chanda P, Bader JS, Elhaik E (27 Jul 2012). "HapZipper: sharing HapMap populations just got easier". Nucleic Acids Research. 40 (20): e159. doi:10.1093/nar/gks709. PMC 3488212. PMID 22844100.
Christley S, Lu Y, Li C, Xie X (Jan 15, 2009). "Human genomes as email attachments". Bioinformatics. 25 (2): 274–5. doi:10.1093/bioinformatics/btn582. PMID 18996942.
Pavlichin DS, Weissman T, Yona G (September 2013). "The human genome contracts again". Bioinformatics. 29 (17): 2199–202. doi:10.1093/bioinformatics/btt362. PMID 23793748.
Hosseini, Morteza; Pratas, Diogo; Pinho, Armando (2016). "A Survey on Data Compression Methods for Biological Sequences". Information. 7 (4): 56. doi:10.3390/info7040056.

harvard.edu

ui.adsabs.harvard.edu

Konstantinidis KT, Tiedje JM (2005). "Genomic insights that advance the species definition for prokaryotes". Proc Natl Acad Sci U S A. 102 (7): 2567–72. Bibcode:2005PNAS..102.2567K. doi:10.1073/pnas.0409727102. PMC 549018. PMID 15701695.

mit.edu

eecs.mit.edu

"Computational Genomics and Proteomics at MIT". Archived from the original on 2018-03-22. Retrieved 2006-12-29.

nih.gov

pubmed.ncbi.nlm.nih.gov

Koonin EV (March 2001). "Computational genomics". Current Biology. 11 (5): R155–8. doi:10.1016/S0960-9822(01)00081-1. PMID 11267880. S2CID 17202180.
Wagner A (September 1997). "A computational genomics approach to the identification of gene networks". Nucleic Acids Research. 25 (18): 3594–604. doi:10.1093/nar/25.18.3594. PMC 146952. PMID 9278479.
Konstantinidis KT, Tiedje JM (2005). "Genomic insights that advance the species definition for prokaryotes". Proc Natl Acad Sci U S A. 102 (7): 2567–72. Bibcode:2005PNAS..102.2567K. doi:10.1073/pnas.0409727102. PMC 549018. PMID 15701695.
Ondov B, Treangen T, Melsted P, Mallonee A, Bergman N, Koren S, Phillippy A (2016). "Mash: fast genome and metagenome distance estimation using MinHash". Genome Biology. 17 (32): 14. doi:10.1186/s13059-016-0997-x. PMC 4915045. PMID 27323842.
Navarro-Muñoz J, Selem-Mojica N, Mullowney M, Kautsar S, Tryon J, Parkinson E, De Los Santos E, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Dias-Cappelini L, Goering A, Thomson R, Metcalf W, Kelleher N, Barona-Gomez F, Medema M (2020). "A computational framework to explore large-scale biosynthetic diversity". Nat Chem Biol. 16 (1): 60–68. doi:10.1038/s41589-019-0400-9. PMC 6917865. PMID 31768033.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". mSystems. 6 (5): e00937-21. bioRxiv 10.1101/2020.12.14.422671. doi:10.1128/msystems.00937-21. PMC 8547482. PMID 34581602.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". bioRxiv. 6 (5): e00937-21. doi:10.1101/2020.12.14.422671. PMC 8547482. PMID 34581602.
Kautsar, Satria A; van der Hooft, Justin J J; de Ridder, Dick; Medema, Marnix H (13 January 2021). "BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters". GigaScience. 10 (1): giaa154. doi:10.1093/gigascience/giaa154. PMC 7804863. PMID 33438731.
Chanda P, Bader JS, Elhaik E (27 Jul 2012). "HapZipper: sharing HapMap populations just got easier". Nucleic Acids Research. 40 (20): e159. doi:10.1093/nar/gks709. PMC 3488212. PMID 22844100.
Christley S, Lu Y, Li C, Xie X (Jan 15, 2009). "Human genomes as email attachments". Bioinformatics. 25 (2): 274–5. doi:10.1093/bioinformatics/btn582. PMID 18996942.
Pavlichin DS, Weissman T, Yona G (September 2013). "The human genome contracts again". Bioinformatics. 29 (17): 2199–202. doi:10.1093/bioinformatics/btt362. PMID 23793748.

ncbi.nlm.nih.gov

Wagner A (September 1997). "A computational genomics approach to the identification of gene networks". Nucleic Acids Research. 25 (18): 3594–604. doi:10.1093/nar/25.18.3594. PMC 146952. PMID 9278479.
Konstantinidis KT, Tiedje JM (2005). "Genomic insights that advance the species definition for prokaryotes". Proc Natl Acad Sci U S A. 102 (7): 2567–72. Bibcode:2005PNAS..102.2567K. doi:10.1073/pnas.0409727102. PMC 549018. PMID 15701695.
Ondov B, Treangen T, Melsted P, Mallonee A, Bergman N, Koren S, Phillippy A (2016). "Mash: fast genome and metagenome distance estimation using MinHash". Genome Biology. 17 (32): 14. doi:10.1186/s13059-016-0997-x. PMC 4915045. PMID 27323842.
Navarro-Muñoz J, Selem-Mojica N, Mullowney M, Kautsar S, Tryon J, Parkinson E, De Los Santos E, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Dias-Cappelini L, Goering A, Thomson R, Metcalf W, Kelleher N, Barona-Gomez F, Medema M (2020). "A computational framework to explore large-scale biosynthetic diversity". Nat Chem Biol. 16 (1): 60–68. doi:10.1038/s41589-019-0400-9. PMC 6917865. PMID 31768033.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". mSystems. 6 (5): e00937-21. bioRxiv 10.1101/2020.12.14.422671. doi:10.1128/msystems.00937-21. PMC 8547482. PMID 34581602.
Pascal-Andreu V, Augustijn H, van den Berg K, van der Hooft J, Fischbach M, Medema M (2020). "BiG-MAP: an automated pipeline to profile metabolic gene cluster abundance and expression in microbiomes". bioRxiv. 6 (5): e00937-21. doi:10.1101/2020.12.14.422671. PMC 8547482. PMID 34581602.
Kautsar, Satria A; van der Hooft, Justin J J; de Ridder, Dick; Medema, Marnix H (13 January 2021). "BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters". GigaScience. 10 (1): giaa154. doi:10.1093/gigascience/giaa154. PMC 7804863. PMID 33438731.
Chanda P, Bader JS, Elhaik E (27 Jul 2012). "HapZipper: sharing HapMap populations just got easier". Nucleic Acids Research. 40 (20): e159. doi:10.1093/nar/gks709. PMC 3488212. PMID 22844100.

semanticscholar.org

api.semanticscholar.org

Koonin EV (March 2001). "Computational genomics". Current Biology. 11 (5): R155–8. doi:10.1016/S0960-9822(01)00081-1. PMID 11267880. S2CID 17202180.

web.archive.org

"Computational Genomics and Proteomics at MIT". Archived from the original on 2018-03-22. Retrieved 2006-12-29.