References analysis of the Wikipedia article "Computational microscopy" in the English version

arxiv.org (Global: 69^th place; English: 59^th place)

Zheng, G.; Horstmeyer, R.; Yang, C. (2013). "Wide-field, high-resolution Fourier ptychographic microscopy". Nature Photonics. 7 (9): 739–745. arXiv:1405.0226. Bibcode:2013NaPho...7..739Z. doi:10.1038/nphoton.2013.187. PMID 25243016.

Elser, V. (2003). "Phase retrieval by iterated projections". Journal of the Optical Society of America A. 20 (1): 40–55. arXiv:math/0111080. Bibcode:2003JOSAA..20...40E. doi:10.1364/JOSAA.20.000040. PMID 12542317.

Sinha, A.; Lee, J.; Li, S.; Barbastathis, G. (2017). "Lensless computational imaging through deep learning". Optica. 4 (9): 1117–1125. arXiv:1702.08516. Bibcode:2017Optic...4.1117S. doi:10.1364/OPTICA.4.001117.

Wang, K., Song, L., Wang, C., Ren, Z., Zhao, G., Dou, J., Di, J., Barbastathis, G., Zhou, R., Zhao, J., Lam, E. Y. (2024). "On the use of deep learning for phase recovery". Light: Science & Applications. 13 (1) 4. arXiv:2308.00942. Bibcode:2024LSA....13....4W. doi:10.1038/s41377-023-01340-x.{{cite journal}}: CS1 maint: multiple names: authors list (link)

Cherukara, M. J.; Nashed, Y. S. G.; Harder, R. J. (2018). "Real-time coherent diffraction inversion using deep generative networks". Scientific Reports. 8 (1): 16520. arXiv:1806.03992. Bibcode:2018NatSR...816520C. doi:10.1038/s41598-018-34525-1. PMC 6224523. PMID 30410034.

Seaberg, M. D.; Zhang, B.; Günaydın, H.; Teng, D.; Ozcan, A. (2014). "Tabletop nanometer extreme ultraviolet imaging in an extended reflection mode using coherent Fresnel ptychography". Optica. 1 (1): 39–44. arXiv:1312.2049. Bibcode:2014Optic...1...39S. doi:10.1364/OPTICA.1.000039.

Latychevskaia, T.; Longchamp, J.-N.; Fink, H.-W. (2012). "When holography meets coherent diffraction imaging". Optics Express. 20 (27): 28871–28892. arXiv:1106.1320. Bibcode:2012OExpr..2028871L. doi:10.1364/OE.20.028871. PMID 23263128.

Chapman, H. N.; Barty, A.; Bogan, M. J.; Boutet, S. (2006). "Femtosecond diffractive imaging with a soft-X-ray free-electron laser". Nature Physics. 2 (12): 839–843. arXiv:physics/0610044. Bibcode:2006NatPh...2..839C. doi:10.1038/nphys461.

Jiang Y, Chen Z, Han Y, Deb P, Gao H, Xie S, et al. (July 2018). "Electron ptychography of 2D materials to deep sub-ångström resolution". Nature. 559 (7714): 343–349. arXiv:1801.04630. Bibcode:2018Natur.559..343J. doi:10.1038/s41586-018-0298-5. PMID 30022131. S2CID 49865457.

Chen, Zhen; Jiang, Yi; Shao, Yu-Tsun; Holtz, Megan E.; Odstrčil, Michal; Guizar-Sicairos, Manuel; Hanke, Isabelle; Ganschow, Steffen; Schlom, Darrell G.; Muller, David A. (21 May 2021). "Electron ptychography achieves atomic-resolution limits set by lattice vibrations". Science. 372 (6544): 826–831. arXiv:2101.00465. Bibcode:2021Sci...372..826C. doi:10.1126/science.abg2533. ISSN 0036-8075. PMID 34016774. S2CID 230435950.

Yang, Y.; Zhou, J.; Zhu, F.; Yuan, Y.; Chang, D.; Kim, D. S.; Pham, M.; Rana, A.; Tian, X.; Yao, Y.; Osher, S.; Schmid, A. K.; Hu, L.; Ercius, P.; Miao, J. (2021). "Determining the three-dimensional atomic structure of an amorphous solid". Nature. 592 (7852): 60–64. arXiv:2004.02266. Bibcode:2021Natur.592...60Y. doi:10.1038/s41586-021-03354-0. PMID 33790443. S2CID 214802235.

Pelz, P. M.; Griffin, S. M.; Stonemeyer, S.; Popple, D.; DeVyldere, H.; Ercius, P.; Zettl, A.; Scott, M. C.; Ophus, C. (2023). "Solving complex nanostructures with ptychographic atomic electron tomography". Nature Communications. 14 7906. arXiv:2206.08958. Bibcode:2023NatCo..14.7906P. doi:10.1038/s41467-023-43634-z.

Tate, M. W. (2016). "High Dynamic Range Pixel Array Detector for Scanning Transmission Electron Microscopy". Microscopy and Microanalysis. 22 (1): 237–249. arXiv:1511.03539. Bibcode:2016MiMic..22..237T. doi:10.1017/S1431927615015664.

doi.org (Global: 2^nd place; English: 2^nd place)

Miao, Jianwei (2025-01-09). "Computational microscopy with coherent diffractive imaging and ptychography". Nature. 637 (8045): 281–295. Bibcode:2025Natur.637..281M. doi:10.1038/s41586-024-08278-z.

Rodenburg J, Maiden A (2019). "Ptychography". In Hawkes PW, Spence JC (eds.). Springer Handbook of Microscopy (PDF). Springer Handbooks. Springer International Publishing. pp. 819–904. doi:10.1007/978-3-030-00069-1_17. ISBN 978-3-030-00068-4.

Shechtman, Y., Eldar, Y. C., Cohen, O., Chapman, H. N., Miao, J. & Segev, M. (2015). "Phase retrieval with application to optical imaging: a contemporary overview". IEEE Signal Processing Magazine. 32 (3): 87–109. Bibcode:2015ISPM...32...87S. doi:10.1109/MSP.2014.2352673.{{cite journal}}: CS1 maint: multiple names: authors list (link)

Pfeiffer, F. (2018). "X-ray ptychography". Nature Photonics. 12 (1): 9–17. Bibcode:2018NaPho..12....9P. doi:10.1038/s41566-017-0072-5.

Zheng, G.; Shen, C.; Jiang, S.; Song, P.; Yang, C. (2021). "Concept, implementations and applications of Fourier ptychography". Nature Reviews Physics. 3: 207–223. doi:10.1038/s42254-021-00289-4 (inactive 9 November 2025).{{cite journal}}: CS1 maint: DOI inactive as of November 2025 (link)

Fienup, J. R. (1978). "Reconstruction of an object from the modulus of its Fourier transform". Optics Letters. 3 (1): 27–29. Bibcode:1978OptL....3...27F. doi:10.1364/OL.3.000027.

Fienup, J. R. (1982). "Phase retrieval algorithms: a comparison". Applied Optics. 21 (15): 2758–2769. Bibcode:1982ApOpt..21.2758F. doi:10.1364/AO.21.002758.

Miao, J.; Sayre, D.; Chapman, H. N. (1998). "Phase retrieval from the magnitude of the Fourier transforms of nonperiodic objects". JOSA A. 15 (6): 1662–1669. Bibcode:1998JOSAA..15.1662M. doi:10.1364/JOSAA.15.001662.

Miao, J.; Charalambous, P.; Kirz, J.; Sayre, D. (1999). "Extending the methodology of X-ray crystallography to allow imaging of micrometre-sized non-crystalline specimens". Nature. 400 (6742): 342–344. Bibcode:1999Natur.400..342M. doi:10.1038/22498.

Rodenburg, J. M. (2007). "Hard X-ray lensless imaging of extended objects". Physical Review Letters. 98 (3) 034801. Bibcode:2007PhRvL..98c4801R. doi:10.1103/PhysRevLett.98.034801.

Thibault, P. (2008). "High-resolution scanning X-ray diffraction microscopy". Science. 321 (5887): 379–382. Bibcode:2008Sci...321..379T. doi:10.1126/science.1158573.

Maiden, A. M.; Rodenburg, J. M. (2009). "An improved ptychographical phase retrieval algorithm for diffractive imaging". Ultramicroscopy. 109 (10): 1256–1262. doi:10.1016/j.ultramic.2009.05.012. PMID 19541420.

Thibault, P.; Guizar-Sicairos, M. (2012). "Maximum-likelihood refinement for coherent diffractive imaging". New Journal of Physics. 14 (6) 063004. Bibcode:2012NJPh...14f3004T. doi:10.1088/1367-2630/14/6/063004.

Odstrčil, M.; Menzel, A.; Guizar-Sicairos, M. (2018). "Iterative least-squares solver for generalized maximum-likelihood ptychography". Optics Express. 26 (3): 3108–3123. Bibcode:2018OExpr..26.3108O. doi:10.1364/OE.26.003108. PMID 29401843.

Fannjiang, A.; Strohmer, T. (2020). "The numerics of phase retrieval". Acta Numerica. 29: 125–228. doi:10.1017/S0962492920000017 (inactive 9 November 2025).{{cite journal}}: CS1 maint: DOI inactive as of November 2025 (link)

Rivenson, Y.; Zhang, Y.; Günaydın, H.; Teng, D.; Ozcan, A. (2018). "Phase recovery and holographic image reconstruction using deep learning in neural networks". Light: Science & Applications. 7 (2): 17141. doi:10.1038/lsa.2017.141.

Pfeifer, M. A.; Williams, G. J.; Vartanyants, I. A.; Harder, R.; Robinson, I. K. (2006). "Three-dimensional mapping of a deformation field inside a nanocrystal". Nature. 442 (7098): 63–66. Bibcode:2006Natur.442...63P. doi:10.1038/nature04867.

Williams, G. J.; Quiney, H. M.; Dhal, B. B.; Tran, C. Q.; Nugent, K. A.; Peele, A. G.; Paterson, D.; de Jonge, M. D. (2006). "Fresnel coherent diffractive imaging". Physical Review Letters. 97 (2) 025506. Bibcode:2006PhRvL..97b5506W. doi:10.1103/PhysRevLett.97.025506.

Zhang, F.; Chen, B.; Morrison, G. R.; Vila-Comamala, J.; Guizar-Sicairos, M.; Robinson, I. K. (2016). "Phase retrieval by coherent modulation imaging". Nature Communications. 7 13367. Bibcode:2016NatCo...713367Z. doi:10.1038/ncomms13367. PMID 27857061.

Miao, J.; Ishikawa, T.; Robinson, I. K.; Murnane, M. M. (2015). "Beyond crystallography: diffractive imaging using coherent X-ray light sources". Science. 348 (6234): 530–535. Bibcode:2015Sci...348..530M. doi:10.1126/science.aaa1394. OSTI 1353294.

Scott, M. C.; Chen, C. C.; Mecklenburg, M.; Zhu, C.; Xu, X.; Ercius, P.; Dahmen, U.; Regan, B. C.; Miao, J. (2012). "Electron tomography at 2.4-ångström resolution". Nature. 483 (7390): 444–447. Bibcode:2012Natur.483..444S. doi:10.1038/nature10934. PMID 22437612. S2CID 1600103.

Miao, J.; Ercius, P.; Billinge, S. J. L. (2016). "Atomic electron tomography: 3D structures without crystals". Science. 353 (6306) aaf2157. doi:10.1126/science.aaf2157. PMID 27708010. S2CID 30174421.

Voyles, P. (2021). "Atomic structure of a glass imaged at last". Nature. 592 (7852): 31–32. doi:10.1038/d41586-021-00794-6. PMID 33790449. S2CID 232481931.

Yuan, Y.; Kim, D. S.; Zhou, J.; Chang, D. J.; Zhu, F.; Nagaoka, Y.; Yang, Y.; Pham, M.; Osher, S. J.; Chen, O.; Ercius, P.; Schmid, A. K.; Miao, J. (2022). "Three-dimensional atomic packing in amorphous solids with liquid-like structure". Nat. Mater. 21 (1): 95–102. Bibcode:2022NatMa..21...95Y. doi:10.1038/s41563-021-01114-z. OSTI 1831088. PMID 34663951. S2CID 239022109.

Chang, D. J.; Kim, D. S.; Rana, A.; Tian, X.; Zhou, J.; Ercius, P.; Miao, J. (2020). "Ptychographic atomic electron tomography: Towards three-dimensional imaging of individual light atoms in materials". Physical Review B. 102 (17) 174101. Bibcode:2020PhRvB.102q4101C. doi:10.1103/PhysRevB.102.174101. OSTI 1756392.

Donnelly, C.; Guizar-Sicairos, M.; Scagnoli, V.; Gliga, S.; Holler, M.; Raabe, J.; Heyderman, L. J. (2017). "Three-dimensional magnetization structures revealed with X-ray vector nanotomography". Nature. 547 (7663): 328–331. Bibcode:2017Natur.547..328D. doi:10.1038/nature23006. PMID 28726832.

Rana, A.; Liao, C.-T.; Iacocca, E.; Zou, J.; Pham, M.; Lu, X.; Cating Subramanian, E.-E.; Lo, Y.-H.; Ryan, S. A.; Bevis, C. S.; Karl, R. M.; Glaid, A. J.; Rable, J.; Mahale, P.; Hirst, J.; Ostler, T.; Liu, W.; O'Leary, C. M.; Yu, Y.-S.; Bustillo, K.; Ohldag, H.; Shapiro, D. A.; Yazdi, S.; Mallouk, T. E.; Osher, S. J.; Kapteyn, H. C.; Crespi, V. H.; Badding, J. V.; Tserkovnyak, Y.; Murnane, M. M.; Miao, J. (2023). "Three-dimensional topological magnetic monopoles and their interactions in a ferromagnetic meta-lattice". Nature Nanotechnology. 18 (3): 227–232. Bibcode:2023NatNa..18..227R. doi:10.1038/s41565-022-01311-0. PMID 36690739.

Yang, H.; Zhou, X.; Chen, Q.; Jiang, M.; Li, H.; Shi, Y.; Zhao, H.; Wu, G.; Wu, X. (2022). "Operando 3D imaging of in situ strain in battery cathodes under electrochemical cycling". Nature. 606 (7913): 290–297. doi:10.1038/s41586-022-04689-y. OSTI 1873170. PMID 35676429.

Michelson, A.; Minevich, B.; Emamy, H.; Huang, X.; Chu, Y. S.; Yan, H.; Gang, O. (2022). "Three-dimensional visualization of nanoparticle lattices and multimaterial frameworks". Science. 376 (6589): 203–207. Bibcode:2022Sci...376..203M. doi:10.1126/science.abk0463. OSTI 1886239.

Holler, M.; Guizar-Sicairos, M.; Feser, J.; Diaz, A. I.; Töpperwien, G.; Karihaloo, B.; Baumbach, T. (2017). "High-resolution non-destructive three-dimensional imaging of integrated circuits". Nature. 543 (7645): 402–406. Bibcode:2017Natur.543..402H. doi:10.1038/nature21698. PMID 28300088.

Aidukas, T.; Phillips, N. W.; Diaz, A.; Poghosyan, E.; Müller, E.; Levi, A. F. J.; Aeppli, G.; Guizar-Sicairos, M.; Holler, M. (2024). "High-performance 4-nm-resolution X-ray tomography using burst ptychography". Nature. 632 (8023): 81–88. Bibcode:2024Natur.632...81A. doi:10.1038/s41586-024-07615-6. PMID 39085541.

Shahmoradian, S. H.; Tsai, E. H. R.; Diaz, A.; Guizar-Sicairos, M.; Raabe, J.; Spycher, L. (2017). "Three-dimensional imaging of biological tissue by cryo X-ray ptychography". Scientific Reports. 7 6291. Bibcode:2017NatSR...7.6291S. doi:10.1038/s41598-017-05587-4.

Deng, J.; Ma, R. S.; Wang, J.; Yang, W. (2018). "Correlative 3D X-ray fluorescence and ptychographic tomography of frozen-hydrated green algae". Science Advances. 4 (8) eaau4548. Bibcode:2018SciA....4.4548D. doi:10.1126/sciadv.aau4548.

Pei, X.; Zhou, L.; Huang, C. (2023). "Cryogenic electron ptychographic single-particle analysis with wide bandwidth information transfer". Nature Communications. 14 3027. Bibcode:2023NatCo..14.3027P. doi:10.1038/s41467-023-38268-0.

Küçükoğlu, B.; Mohammed, I.; Guerrero-Ferreira, R. C.; Ribet, S. M.; Varnavides, G.; Leidl, M. L.; Lau, K.; Nazarov, S.; Myasnikov, A.; Kube, M.; Radecke, J.; Sachse, C.; Müller-Caspary, K.; Ophus, C.; Stahlberg, H. (2024). "Low-dose cryo-electron ptychography of proteins at sub-nanometer resolution". Nature Communications. 15 8062. Bibcode:2024NatCo..15.8062K. doi:10.1038/s41467-024-52403-5.

Broennimann, Ch.; Eikenberry, E. F.; Henrich, B.; Horisberger, R.; Huelsen, G.; Pohl, E.; Schmitt, B.; Schulze-Briese, C.; Suzuki, M.; Tomizaki, T.; Toyokawa, H.; Wagner, A. (2006). "The PILATUS 1M detector". Journal of Synchrotron Radiation. 13 (2): 120–130. doi:10.1107/S0909049505038665.

harvard.edu (Global: 18^th place; English: 17^th place)

ui.adsabs.harvard.edu

Pfeiffer, F. (2018). "X-ray ptychography". Nature Photonics. 12 (1): 9–17. Bibcode:2018NaPho..12....9P. doi:10.1038/s41566-017-0072-5.

Fienup, J. R. (1978). "Reconstruction of an object from the modulus of its Fourier transform". Optics Letters. 3 (1): 27–29. Bibcode:1978OptL....3...27F. doi:10.1364/OL.3.000027.

Fienup, J. R. (1982). "Phase retrieval algorithms: a comparison". Applied Optics. 21 (15): 2758–2769. Bibcode:1982ApOpt..21.2758F. doi:10.1364/AO.21.002758.

Rodenburg, J. M. (2007). "Hard X-ray lensless imaging of extended objects". Physical Review Letters. 98 (3) 034801. Bibcode:2007PhRvL..98c4801R. doi:10.1103/PhysRevLett.98.034801.

Thibault, P. (2008). "High-resolution scanning X-ray diffraction microscopy". Science. 321 (5887): 379–382. Bibcode:2008Sci...321..379T. doi:10.1126/science.1158573.

nih.gov (Global: 4^th place; English: 4^th place)

pubmed.ncbi.nlm.nih.gov

Voyles, P. (2021). "Atomic structure of a glass imaged at last". Nature. 592 (7852): 31–32. doi:10.1038/d41586-021-00794-6. PMID 33790449. S2CID 232481931.

ncbi.nlm.nih.gov

osti.gov (Global: 2,036^th place; English: 1,254^th place)

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Voyles, P. (2021). "Atomic structure of a glass imaged at last". Nature. 592 (7852): 31–32. doi:10.1038/d41586-021-00794-6. PMID 33790449. S2CID 232481931.

worktribe.com (Global: low place; English: low place)

hull-repository.worktribe.com

Computational microscopy (English Wikipedia)

arxiv.org (Global: 69^th place; English: 59^th place)

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Computational microscopy (English Wikipedia)

arxiv.org (Global: 69th place; English: 59th place)

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bib-pubdb1.desy.de

doi.org (Global: 2nd place; English: 2nd place)

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science.org (Global: 1,160th place; English: 737th place)

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