Conserved signature indels (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "Conserved signature indels" in English language version.

refsWebsite

Global rank English rank

25nih.gov

4^th place

19doi.org

2^nd place

7semanticscholar.org

11^th place

8^th place

3harvard.edu

18^th place

17^th place

1web.archive.org

1^st place

1microbios.org

low place

1sgmjournals.org

low place

1psu.edu

207^th place

136^th place

1worldcat.org

5^th place

doi.org

Baldauf, S. L. (1993). "Animals and Fungi are Each Other's Closest Relatives: Congruent Evidence from Multiple Proteins". Proceedings of the National Academy of Sciences. 90 (24): 11558–11562. Bibcode:1993PNAS...9011558B. doi:10.1073/pnas.90.24.11558. PMC 48023. PMID 8265589.
Gupta, Radhey S. (1998). "Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes". Microbiology and Molecular Biology Reviews. 62 (4): 1435–91. doi:10.1128/MMBR.62.4.1435-1491.1998. PMC 98952. PMID 9841678.
Gupta, Radhey S.; Griffiths, Emma (2002). "Critical Issues in Bacterial Phylogeny". Theoretical Population Biology. 61 (4): 423–34. doi:10.1006/tpbi.2002.1589. PMID 12167362.
Cutiño-Jiménez, Ania M.; Martins-Pinheiro, Marinalva; Lima, Wanessa C.; Martín-Tornet, Alexander; Morales, Osleidys G.; Menck, Carlos F.M. (2010). "Evolutionary placement of Xanthomonadales based on conserved protein signature sequences". Molecular Phylogenetics and Evolution. 54 (2): 524–34. doi:10.1016/j.ympev.2009.09.026. PMID 19786109.
Rokas, Antonis; Holland, Peter W.H. (2000). "Rare genomic changes as a tool for phylogenetics". Trends in Ecology & Evolution. 15 (11): 454–459. doi:10.1016/S0169-5347(00)01967-4. PMID 11050348.
Gupta, Radhey S.; Kanter-Eivin, David A. (9 May 2023). "AppIndels.com server: a web-based tool for the identification of known taxon-specific conserved signature indels in genome sequences. Validation of its usefulness by predicting the taxonomic affiliation of >700 unclassified strains of Bacillus species". International Journal of Systematic and Evolutionary Microbiology. 73 (5). doi:10.1099/ijsem.0.005844. PMID 37159410.
Gupta, Radhey S.; Bhandari, Vaibhav (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.
Griffiths, E.; Gupta, R. S. (2007). "Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae". Microbiology. 153 (8): 2648–54. doi:10.1099/mic.0.2007/009118-0. PMID 17660429.
Gupta, Radhey S. (2003). "Evolutionary relationships among photosynthetic bacteria". Photosynthesis Research. 76 (1–3): 173–83. doi:10.1023/A:1024999314839. PMID 16228576. S2CID 38460308.
Brown, James R.; Douady, Christophe J.; Italia, Michael J.; Marshall, William E.; Stanhope, Michael J. (2001). "Universal trees based on large combined protein sequence data sets". Nature Genetics. 28 (3): 281–5. doi:10.1038/90129. PMID 11431701. S2CID 8516570.
Cavalier-Smith, T (2002). "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification". International Journal of Systematic and Evolutionary Microbiology. 52 (1): 7–76. doi:10.1099/00207713-52-1-7. PMID 11837318.
Ciccarelli, F. D.; Doerks, T; Von Mering, C; Creevey, CJ; Snel, B; Bork, P (2006). "Toward Automatic Reconstruction of a Highly Resolved Tree of Life". Science. 311 (5765): 1283–7. Bibcode:2006Sci...311.1283C. CiteSeerX 10.1.1.381.9514. doi:10.1126/science.1123061. PMID 16513982. S2CID 1615592.
Daubin, V.; Gouy, M; Perrière, G (2002). "A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History". Genome Research. 12 (7): 1080–90. doi:10.1101/gr.187002. PMC 186629. PMID 12097345.
Eisen, Jonathan A. (1995). "The RecA Protein as a Model Molecule for Molecular Systematic Studies of Bacteria: Comparison of Trees of RecAs and 16S rRNAs from the Same Species". Journal of Molecular Evolution. 41 (6): 1105–23. Bibcode:1995JMolE..41.1105E. doi:10.1007/bf00173192. PMC 3188426. PMID 8587109.
Gupta, Radhey S.; Shami, Ali (2010). "Molecular signatures for the Crenarchaeota and the Thaumarchaeota". Antonie van Leeuwenhoek. 99 (2): 133–57. doi:10.1007/s10482-010-9488-3. PMID 20711675. S2CID 12874800.
Naushad, Hafiz Sohail; Gupta, Radhey S. (2011). "Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades". Antonie van Leeuwenhoek. 101 (1): 105–24. doi:10.1007/s10482-011-9628-4. PMID 21830122. S2CID 15114511.
Gao, B.; Mohan, R.; Gupta, R. S. (2009). "Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria". International Journal of Systematic and Evolutionary Microbiology. 59 (2): 234–47. doi:10.1099/ijs.0.002741-0. PMID 19196760.
Gupta R.S. & Bhandari V. (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.
Khadka, Bijendra; Persaud, Dhillon; Gupta, Radhey S. (2019-12-29). "Novel Sequence Feature of SecA Translocase Protein Unique to the Thermophilic Bacteria: Bioinformatics Analyses to Investigate Their Potential Roles". Microorganisms. 8 (1): 59. doi:10.3390/microorganisms8010059. ISSN 2076-2607. PMC 7023208. PMID 31905784.

harvard.edu

ui.adsabs.harvard.edu

Baldauf, S. L. (1993). "Animals and Fungi are Each Other's Closest Relatives: Congruent Evidence from Multiple Proteins". Proceedings of the National Academy of Sciences. 90 (24): 11558–11562. Bibcode:1993PNAS...9011558B. doi:10.1073/pnas.90.24.11558. PMC 48023. PMID 8265589.
Ciccarelli, F. D.; Doerks, T; Von Mering, C; Creevey, CJ; Snel, B; Bork, P (2006). "Toward Automatic Reconstruction of a Highly Resolved Tree of Life". Science. 311 (5765): 1283–7. Bibcode:2006Sci...311.1283C. CiteSeerX 10.1.1.381.9514. doi:10.1126/science.1123061. PMID 16513982. S2CID 1615592.
Eisen, Jonathan A. (1995). "The RecA Protein as a Model Molecule for Molecular Systematic Studies of Bacteria: Comparison of Trees of RecAs and 16S rRNAs from the Same Species". Journal of Molecular Evolution. 41 (6): 1105–23. Bibcode:1995JMolE..41.1105E. doi:10.1007/bf00173192. PMC 3188426. PMID 8587109.

microbios.org

im.microbios.org

Griffiths, Emma; Gupta, Radhey S. (2004). "Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales" (PDF). International Microbiology. 7 (1): 41–52. PMID 15179606.

nih.gov

pubmed.ncbi.nlm.nih.gov

Baldauf, S. L. (1993). "Animals and Fungi are Each Other's Closest Relatives: Congruent Evidence from Multiple Proteins". Proceedings of the National Academy of Sciences. 90 (24): 11558–11562. Bibcode:1993PNAS...9011558B. doi:10.1073/pnas.90.24.11558. PMC 48023. PMID 8265589.
Gupta, Radhey S. (1998). "Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes". Microbiology and Molecular Biology Reviews. 62 (4): 1435–91. doi:10.1128/MMBR.62.4.1435-1491.1998. PMC 98952. PMID 9841678.
Gupta, Radhey S.; Griffiths, Emma (2002). "Critical Issues in Bacterial Phylogeny". Theoretical Population Biology. 61 (4): 423–34. doi:10.1006/tpbi.2002.1589. PMID 12167362.
Cutiño-Jiménez, Ania M.; Martins-Pinheiro, Marinalva; Lima, Wanessa C.; Martín-Tornet, Alexander; Morales, Osleidys G.; Menck, Carlos F.M. (2010). "Evolutionary placement of Xanthomonadales based on conserved protein signature sequences". Molecular Phylogenetics and Evolution. 54 (2): 524–34. doi:10.1016/j.ympev.2009.09.026. PMID 19786109.
Rokas, Antonis; Holland, Peter W.H. (2000). "Rare genomic changes as a tool for phylogenetics". Trends in Ecology & Evolution. 15 (11): 454–459. doi:10.1016/S0169-5347(00)01967-4. PMID 11050348.
Gupta, Radhey S.; Kanter-Eivin, David A. (9 May 2023). "AppIndels.com server: a web-based tool for the identification of known taxon-specific conserved signature indels in genome sequences. Validation of its usefulness by predicting the taxonomic affiliation of >700 unclassified strains of Bacillus species". International Journal of Systematic and Evolutionary Microbiology. 73 (5). doi:10.1099/ijsem.0.005844. PMID 37159410.
Gupta, Radhey S.; Bhandari, Vaibhav (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.
Griffiths, E.; Gupta, R. S. (2007). "Phylogeny and shared conserved inserts in proteins provide evidence that Verrucomicrobia are the closest known free-living relatives of chlamydiae". Microbiology. 153 (8): 2648–54. doi:10.1099/mic.0.2007/009118-0. PMID 17660429.
Gupta, Radhey S. (2003). "Evolutionary relationships among photosynthetic bacteria". Photosynthesis Research. 76 (1–3): 173–83. doi:10.1023/A:1024999314839. PMID 16228576. S2CID 38460308.
Griffiths, Emma; Gupta, Radhey S. (2004). "Signature sequences in diverse proteins provide evidence for the late divergence of the Order Aquificales" (PDF). International Microbiology. 7 (1): 41–52. PMID 15179606.
Brown, James R.; Douady, Christophe J.; Italia, Michael J.; Marshall, William E.; Stanhope, Michael J. (2001). "Universal trees based on large combined protein sequence data sets". Nature Genetics. 28 (3): 281–5. doi:10.1038/90129. PMID 11431701. S2CID 8516570.
Cavalier-Smith, T (2002). "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification". International Journal of Systematic and Evolutionary Microbiology. 52 (1): 7–76. doi:10.1099/00207713-52-1-7. PMID 11837318.
Ciccarelli, F. D.; Doerks, T; Von Mering, C; Creevey, CJ; Snel, B; Bork, P (2006). "Toward Automatic Reconstruction of a Highly Resolved Tree of Life". Science. 311 (5765): 1283–7. Bibcode:2006Sci...311.1283C. CiteSeerX 10.1.1.381.9514. doi:10.1126/science.1123061. PMID 16513982. S2CID 1615592.
Daubin, V.; Gouy, M; Perrière, G (2002). "A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History". Genome Research. 12 (7): 1080–90. doi:10.1101/gr.187002. PMC 186629. PMID 12097345.
Eisen, Jonathan A. (1995). "The RecA Protein as a Model Molecule for Molecular Systematic Studies of Bacteria: Comparison of Trees of RecAs and 16S rRNAs from the Same Species". Journal of Molecular Evolution. 41 (6): 1105–23. Bibcode:1995JMolE..41.1105E. doi:10.1007/bf00173192. PMC 3188426. PMID 8587109.
Gupta, Radhey S.; Shami, Ali (2010). "Molecular signatures for the Crenarchaeota and the Thaumarchaeota". Antonie van Leeuwenhoek. 99 (2): 133–57. doi:10.1007/s10482-010-9488-3. PMID 20711675. S2CID 12874800.
Naushad, Hafiz Sohail; Gupta, Radhey S. (2011). "Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades". Antonie van Leeuwenhoek. 101 (1): 105–24. doi:10.1007/s10482-011-9628-4. PMID 21830122. S2CID 15114511.
Gao, B.; Mohan, R.; Gupta, R. S. (2009). "Phylogenomics and protein signatures elucidating the evolutionary relationships among the Gammaproteobacteria". International Journal of Systematic and Evolutionary Microbiology. 59 (2): 234–47. doi:10.1099/ijs.0.002741-0. PMID 19196760.
Gupta R.S. & Bhandari V. (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.
Khadka, Bijendra; Persaud, Dhillon; Gupta, Radhey S. (2019-12-29). "Novel Sequence Feature of SecA Translocase Protein Unique to the Thermophilic Bacteria: Bioinformatics Analyses to Investigate Their Potential Roles". Microorganisms. 8 (1): 59. doi:10.3390/microorganisms8010059. ISSN 2076-2607. PMC 7023208. PMID 31905784.

ncbi.nlm.nih.gov

Baldauf, S. L. (1993). "Animals and Fungi are Each Other's Closest Relatives: Congruent Evidence from Multiple Proteins". Proceedings of the National Academy of Sciences. 90 (24): 11558–11562. Bibcode:1993PNAS...9011558B. doi:10.1073/pnas.90.24.11558. PMC 48023. PMID 8265589.
Gupta, Radhey S. (1998). "Protein Phylogenies and Signature Sequences: A Reappraisal of Evolutionary Relationships among Archaebacteria, Eubacteria, and Eukaryotes". Microbiology and Molecular Biology Reviews. 62 (4): 1435–91. doi:10.1128/MMBR.62.4.1435-1491.1998. PMC 98952. PMID 9841678.
Daubin, V.; Gouy, M; Perrière, G (2002). "A Phylogenomic Approach to Bacterial Phylogeny: Evidence of a Core of Genes Sharing a Common History". Genome Research. 12 (7): 1080–90. doi:10.1101/gr.187002. PMC 186629. PMID 12097345.
Eisen, Jonathan A. (1995). "The RecA Protein as a Model Molecule for Molecular Systematic Studies of Bacteria: Comparison of Trees of RecAs and 16S rRNAs from the Same Species". Journal of Molecular Evolution. 41 (6): 1105–23. Bibcode:1995JMolE..41.1105E. doi:10.1007/bf00173192. PMC 3188426. PMID 8587109.
Khadka, Bijendra; Persaud, Dhillon; Gupta, Radhey S. (2019-12-29). "Novel Sequence Feature of SecA Translocase Protein Unique to the Thermophilic Bacteria: Bioinformatics Analyses to Investigate Their Potential Roles". Microorganisms. 8 (1): 59. doi:10.3390/microorganisms8010059. ISSN 2076-2607. PMC 7023208. PMID 31905784.

psu.edu

citeseerx.ist.psu.edu

Ciccarelli, F. D.; Doerks, T; Von Mering, C; Creevey, CJ; Snel, B; Bork, P (2006). "Toward Automatic Reconstruction of a Highly Resolved Tree of Life". Science. 311 (5765): 1283–7. Bibcode:2006Sci...311.1283C. CiteSeerX 10.1.1.381.9514. doi:10.1126/science.1123061. PMID 16513982. S2CID 1615592.

semanticscholar.org

api.semanticscholar.org

Gupta, Radhey S.; Bhandari, Vaibhav (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.
Gupta, Radhey S. (2003). "Evolutionary relationships among photosynthetic bacteria". Photosynthesis Research. 76 (1–3): 173–83. doi:10.1023/A:1024999314839. PMID 16228576. S2CID 38460308.
Brown, James R.; Douady, Christophe J.; Italia, Michael J.; Marshall, William E.; Stanhope, Michael J. (2001). "Universal trees based on large combined protein sequence data sets". Nature Genetics. 28 (3): 281–5. doi:10.1038/90129. PMID 11431701. S2CID 8516570.
Ciccarelli, F. D.; Doerks, T; Von Mering, C; Creevey, CJ; Snel, B; Bork, P (2006). "Toward Automatic Reconstruction of a Highly Resolved Tree of Life". Science. 311 (5765): 1283–7. Bibcode:2006Sci...311.1283C. CiteSeerX 10.1.1.381.9514. doi:10.1126/science.1123061. PMID 16513982. S2CID 1615592.
Gupta, Radhey S.; Shami, Ali (2010). "Molecular signatures for the Crenarchaeota and the Thaumarchaeota". Antonie van Leeuwenhoek. 99 (2): 133–57. doi:10.1007/s10482-010-9488-3. PMID 20711675. S2CID 12874800.
Naushad, Hafiz Sohail; Gupta, Radhey S. (2011). "Molecular signatures (conserved indels) in protein sequences that are specific for the order Pasteurellales and distinguish two of its main clades". Antonie van Leeuwenhoek. 101 (1): 105–24. doi:10.1007/s10482-011-9628-4. PMID 21830122. S2CID 15114511.
Gupta R.S. & Bhandari V. (2011). "Phylogeny and molecular signatures for the phylum Thermotogae and its subgroups". Antonie van Leeuwenhoek. 100 (1): 1–34. doi:10.1007/s10482-011-9576-z. PMID 21503713. S2CID 24995263.

sgmjournals.org

ijs.sgmjournals.org

Cavalier-Smith, T (2002). "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification". International Journal of Systematic and Evolutionary Microbiology. 52 (1): 7–76. doi:10.1099/00207713-52-1-7. PMID 11837318.

web.archive.org

Gupta, Radhey. "Conserved Inserts and Deletions in Protein Sequences". Bacterial Phylogeny. Gupta lab. Archived from the original on 15 September 2011. Retrieved 2 April 2012.{{cite web}}: CS1 maint: bot: original URL status unknown (link)

worldcat.org

search.worldcat.org

Khadka, Bijendra; Persaud, Dhillon; Gupta, Radhey S. (2019-12-29). "Novel Sequence Feature of SecA Translocase Protein Unique to the Thermophilic Bacteria: Bioinformatics Analyses to Investigate Their Potential Roles". Microorganisms. 8 (1): 59. doi:10.3390/microorganisms8010059. ISSN 2076-2607. PMC 7023208. PMID 31905784.