CrAssphage (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "CrAssphage" in English language version.

refsWebsite

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42nih.gov

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25doi.org

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10harvard.edu

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7worldcat.org

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5semanticscholar.org

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2handle.net

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2nature.com

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1cam.ac.uk

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1web.archive.org

1^st place

cam.ac.uk

repository.cam.ac.uk

Luis Fernando Camarillo Guerrero: Integrative Analysis of the Human Gut Phageome Using a Metagenomics Approach Archived 2021-02-01 at the Wayback Machine, Thesis, Gonville & Caius College, University of Cambridge, August 2020, doi:10.17863/CAM.63973

doi.org

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, et al. (July 2014). "A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes". Nature Communications. 5: 4498. Bibcode:2014NatCo...5.4498D. doi:10.1038/ncomms5498. PMC 4111155. PMID 25058116.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Liang YY, Zhang W, Tong YG, Chen SP (December 2016). "crAssphage is not associated with diarrhoea and has high genetic diversity". Epidemiology and Infection. 144 (16): 3549–3553. doi:10.1017/S095026881600176X. PMC 9150186. PMID 30489235.
Shkoporov AN, Khokhlova EV, Fitzgerald CB, Stockdale SR, Draper LA, Ross RP, Hill C (November 2018). "ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis". Nature Communications. 9 (1): 4781. Bibcode:2018NatCo...9.4781S. doi:10.1038/s41467-018-07225-7. PMC 6235969. PMID 30429469.
Bayfield, Oliver W.; Shkoporov, Andrey N.; Yutin, Natalya; Khokhlova, Ekaterina V.; Smith, Jake L. R.; Hawkins, Dorothy E. D. P.; Koonin, Eugene V.; Hill, Colin; Antson, Alfred A. (2023). "Structural atlas of a human gut crassvirus". Nature. 617 (7960): 409–416. doi:10.1038/s41586-023-06019-2. ISSN 1476-4687. PMC 10172136. PMID 37138077.
"Structure of the most abundant human gut virus". Nature (Briefing). 2023-05-03. doi:10.1038/d41586-023-01336-y. PMID 37138058.
Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.
Edwards, Robert A.; Vega, Alejandro A.; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizabeth A.; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. J.; Cazares, Adrian; de Jonge, Patrick A.; Desnues, Christelle (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. ISSN 2058-5276. PMC 7440971. PMID 31285584.
Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL (December 2012). "Reference-independent comparative metagenomics using cross-assembly: crAss". Bioinformatics. 28 (24): 3225–3231. doi:10.1093/bioinformatics/bts613. PMC 3519457. PMID 23074261.
Falony, Gwen; Joossens, Marie; Vieira-Silva, Sara; Wang, Jun; Darzi, Youssef; Faust, Karoline; Kurilshikov, Alexander; Bonder, Marc Jan; Valles-Colomer, Mireia; Vandeputte, Doris; Tito, Raul Y.; Chaffron, Samuel; Rymenans, Leen; Verspecht, Chloë; De Sutter, Lise (2016-04-29). "Population-level analysis of gut microbiome variation". Science. 352 (6285): 560–564. Bibcode:2016Sci...352..560F. doi:10.1126/science.aad3503. ISSN 1095-9203. PMID 27126039. S2CID 2920612.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Yutin N, Makarova KS, Gussow AB, Krupovic M, Segall A, Edwards RA, Koonin EV (January 2018). "Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut". Nature Microbiology. 3 (1): 38–46. doi:10.1038/s41564-017-0053-y. PMC 5736458. PMID 29133882.
Shkoporov AN, Khokhlova EV, Stephens N, Hueston C, Seymour S, Hryckowian AJ, et al. (August 2021). "Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis". BMC Biology. 19 (1): 163. doi:10.1186/s12915-021-01084-3. PMC 8375218. PMID 34407825.
Guerin E, Shkoporov AN, Stockdale SR, Comas JC, Khokhlova EV, Clooney AG, et al. (April 2021). "Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens". Microbiome. 9 (1): 89. doi:10.1186/s40168-021-01036-7. PMC 8042965. PMID 33845877.
Honap TP, Sankaranarayanan K, Schnorr SL, Ozga AT, Warinner C, Lewis CM (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. PMC 6961876. PMID 31940321.
Ahmed W, Lobos A, Senkbeil J, Peraud J, Gallard J, Harwood VJ (March 2018). "Evaluation of the novel crAssphage marker for sewage pollution tracking in storm drain outfalls in Tampa, Florida". Water Research. 131: 142–150. Bibcode:2018WatRe.131..142A. doi:10.1016/j.watres.2017.12.011. PMID 29281808.
García-Aljaro C, Ballesté E, Muniesa M, Jofre J (November 2017). "Determination of crAssphage in water samples and applicability for tracking human faecal pollution". Microbial Biotechnology. 10 (6): 1775–1780. doi:10.1111/1751-7915.12841. PMC 5658656. PMID 28925595.
Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC (August 2017). "Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement". Environmental Science & Technology. 51 (16): 9146–9154. Bibcode:2017EnST...51.9146S. doi:10.1021/acs.est.7b02703. PMC 7350147. PMID 28700235.
Park GW, Ng TF, Freeland AL, Marconi VC, Boom JA, Staat MA, et al. (August 2020). "CrAssphage as a Novel Tool to Detect Human Fecal Contamination on Environmental Surfaces and Hands". Emerging Infectious Diseases. 26 (8): 1731–1739. doi:10.3201/eid2608.200346. PMC 7392416. PMID 32511090.
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, et al. (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. PMC 7440971. PMID 31285584.
de Jonge PA, Wortelboer K, Scheithauer TP, van den Born BH, Zwinderman AH, Nobrega FL, et al. (June 2022). "Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome". Nature Communications. 13 (1): 3594. Bibcode:2022NatCo..13.3594D. doi:10.1038/s41467-022-31390-5. PMC 9226167. PMID 35739117.
Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. Bibcode:2020NatCo..11..280S. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.
Camarillo-Guerrero, Luis F.; Almeida, Alexandre; Rangel-Pineros, Guillermo; Finn, Robert D.; Lawley, Trevor D. (2021-02-18). "Massive expansion of human gut bacteriophage diversity". Cell. 184 (4): 1098–1109.e9. doi:10.1016/j.cell.2021.01.029. ISSN 0092-8674. PMC 7895897. PMID 33606979. S2CID 221510077.
Luis Fernando Camarillo Guerrero: Integrative Analysis of the Human Gut Phageome Using a Metagenomics Approach Archived 2021-02-01 at the Wayback Machine, Thesis, Gonville & Caius College, University of Cambridge, August 2020, doi:10.17863/CAM.63973

handle.net

hdl.handle.net

Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.

harvard.edu

ui.adsabs.harvard.edu

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, et al. (July 2014). "A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes". Nature Communications. 5: 4498. Bibcode:2014NatCo...5.4498D. doi:10.1038/ncomms5498. PMC 4111155. PMID 25058116.
Shkoporov AN, Khokhlova EV, Fitzgerald CB, Stockdale SR, Draper LA, Ross RP, Hill C (November 2018). "ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis". Nature Communications. 9 (1): 4781. Bibcode:2018NatCo...9.4781S. doi:10.1038/s41467-018-07225-7. PMC 6235969. PMID 30429469.
Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.
Falony, Gwen; Joossens, Marie; Vieira-Silva, Sara; Wang, Jun; Darzi, Youssef; Faust, Karoline; Kurilshikov, Alexander; Bonder, Marc Jan; Valles-Colomer, Mireia; Vandeputte, Doris; Tito, Raul Y.; Chaffron, Samuel; Rymenans, Leen; Verspecht, Chloë; De Sutter, Lise (2016-04-29). "Population-level analysis of gut microbiome variation". Science. 352 (6285): 560–564. Bibcode:2016Sci...352..560F. doi:10.1126/science.aad3503. ISSN 1095-9203. PMID 27126039. S2CID 2920612.
Honap TP, Sankaranarayanan K, Schnorr SL, Ozga AT, Warinner C, Lewis CM (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. PMC 6961876. PMID 31940321.
Ahmed W, Lobos A, Senkbeil J, Peraud J, Gallard J, Harwood VJ (March 2018). "Evaluation of the novel crAssphage marker for sewage pollution tracking in storm drain outfalls in Tampa, Florida". Water Research. 131: 142–150. Bibcode:2018WatRe.131..142A. doi:10.1016/j.watres.2017.12.011. PMID 29281808.
Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC (August 2017). "Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement". Environmental Science & Technology. 51 (16): 9146–9154. Bibcode:2017EnST...51.9146S. doi:10.1021/acs.est.7b02703. PMC 7350147. PMID 28700235.
de Jonge PA, Wortelboer K, Scheithauer TP, van den Born BH, Zwinderman AH, Nobrega FL, et al. (June 2022). "Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome". Nature Communications. 13 (1): 3594. Bibcode:2022NatCo..13.3594D. doi:10.1038/s41467-022-31390-5. PMC 9226167. PMID 35739117.
Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. Bibcode:2020NatCo..11..280S. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.

nature.com

"Structure of the most abundant human gut virus". Nature (Briefing). 2023-05-03. doi:10.1038/d41586-023-01336-y. PMID 37138058.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.

nih.gov

pubmed.ncbi.nlm.nih.gov

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, et al. (July 2014). "A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes". Nature Communications. 5: 4498. Bibcode:2014NatCo...5.4498D. doi:10.1038/ncomms5498. PMC 4111155. PMID 25058116.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Liang YY, Zhang W, Tong YG, Chen SP (December 2016). "crAssphage is not associated with diarrhoea and has high genetic diversity". Epidemiology and Infection. 144 (16): 3549–3553. doi:10.1017/S095026881600176X. PMC 9150186. PMID 30489235.
Shkoporov AN, Khokhlova EV, Fitzgerald CB, Stockdale SR, Draper LA, Ross RP, Hill C (November 2018). "ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis". Nature Communications. 9 (1): 4781. Bibcode:2018NatCo...9.4781S. doi:10.1038/s41467-018-07225-7. PMC 6235969. PMID 30429469.
Bayfield, Oliver W.; Shkoporov, Andrey N.; Yutin, Natalya; Khokhlova, Ekaterina V.; Smith, Jake L. R.; Hawkins, Dorothy E. D. P.; Koonin, Eugene V.; Hill, Colin; Antson, Alfred A. (2023). "Structural atlas of a human gut crassvirus". Nature. 617 (7960): 409–416. doi:10.1038/s41586-023-06019-2. ISSN 1476-4687. PMC 10172136. PMID 37138077.
"Structure of the most abundant human gut virus". Nature (Briefing). 2023-05-03. doi:10.1038/d41586-023-01336-y. PMID 37138058.
Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.
Edwards, Robert A.; Vega, Alejandro A.; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizabeth A.; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. J.; Cazares, Adrian; de Jonge, Patrick A.; Desnues, Christelle (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. ISSN 2058-5276. PMC 7440971. PMID 31285584.
Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL (December 2012). "Reference-independent comparative metagenomics using cross-assembly: crAss". Bioinformatics. 28 (24): 3225–3231. doi:10.1093/bioinformatics/bts613. PMC 3519457. PMID 23074261.
Falony, Gwen; Joossens, Marie; Vieira-Silva, Sara; Wang, Jun; Darzi, Youssef; Faust, Karoline; Kurilshikov, Alexander; Bonder, Marc Jan; Valles-Colomer, Mireia; Vandeputte, Doris; Tito, Raul Y.; Chaffron, Samuel; Rymenans, Leen; Verspecht, Chloë; De Sutter, Lise (2016-04-29). "Population-level analysis of gut microbiome variation". Science. 352 (6285): 560–564. Bibcode:2016Sci...352..560F. doi:10.1126/science.aad3503. ISSN 1095-9203. PMID 27126039. S2CID 2920612.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Yutin N, Makarova KS, Gussow AB, Krupovic M, Segall A, Edwards RA, Koonin EV (January 2018). "Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut". Nature Microbiology. 3 (1): 38–46. doi:10.1038/s41564-017-0053-y. PMC 5736458. PMID 29133882.
Shkoporov AN, Khokhlova EV, Stephens N, Hueston C, Seymour S, Hryckowian AJ, et al. (August 2021). "Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis". BMC Biology. 19 (1): 163. doi:10.1186/s12915-021-01084-3. PMC 8375218. PMID 34407825.
Guerin E, Shkoporov AN, Stockdale SR, Comas JC, Khokhlova EV, Clooney AG, et al. (April 2021). "Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens". Microbiome. 9 (1): 89. doi:10.1186/s40168-021-01036-7. PMC 8042965. PMID 33845877.
Honap TP, Sankaranarayanan K, Schnorr SL, Ozga AT, Warinner C, Lewis CM (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. PMC 6961876. PMID 31940321.
Ahmed W, Lobos A, Senkbeil J, Peraud J, Gallard J, Harwood VJ (March 2018). "Evaluation of the novel crAssphage marker for sewage pollution tracking in storm drain outfalls in Tampa, Florida". Water Research. 131: 142–150. Bibcode:2018WatRe.131..142A. doi:10.1016/j.watres.2017.12.011. PMID 29281808.
García-Aljaro C, Ballesté E, Muniesa M, Jofre J (November 2017). "Determination of crAssphage in water samples and applicability for tracking human faecal pollution". Microbial Biotechnology. 10 (6): 1775–1780. doi:10.1111/1751-7915.12841. PMC 5658656. PMID 28925595.
Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC (August 2017). "Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement". Environmental Science & Technology. 51 (16): 9146–9154. Bibcode:2017EnST...51.9146S. doi:10.1021/acs.est.7b02703. PMC 7350147. PMID 28700235.
Park GW, Ng TF, Freeland AL, Marconi VC, Boom JA, Staat MA, et al. (August 2020). "CrAssphage as a Novel Tool to Detect Human Fecal Contamination on Environmental Surfaces and Hands". Emerging Infectious Diseases. 26 (8): 1731–1739. doi:10.3201/eid2608.200346. PMC 7392416. PMID 32511090.
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, et al. (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. PMC 7440971. PMID 31285584.
de Jonge PA, Wortelboer K, Scheithauer TP, van den Born BH, Zwinderman AH, Nobrega FL, et al. (June 2022). "Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome". Nature Communications. 13 (1): 3594. Bibcode:2022NatCo..13.3594D. doi:10.1038/s41467-022-31390-5. PMC 9226167. PMID 35739117.
Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. Bibcode:2020NatCo..11..280S. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.
Camarillo-Guerrero, Luis F.; Almeida, Alexandre; Rangel-Pineros, Guillermo; Finn, Robert D.; Lawley, Trevor D. (2021-02-18). "Massive expansion of human gut bacteriophage diversity". Cell. 184 (4): 1098–1109.e9. doi:10.1016/j.cell.2021.01.029. ISSN 0092-8674. PMC 7895897. PMID 33606979. S2CID 221510077.

ncbi.nlm.nih.gov

Dutilh BE, Cassman N, McNair K, Sanchez SE, Silva GG, Boling L, et al. (July 2014). "A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes". Nature Communications. 5: 4498. Bibcode:2014NatCo...5.4498D. doi:10.1038/ncomms5498. PMC 4111155. PMID 25058116.
Liang YY, Zhang W, Tong YG, Chen SP (December 2016). "crAssphage is not associated with diarrhoea and has high genetic diversity". Epidemiology and Infection. 144 (16): 3549–3553. doi:10.1017/S095026881600176X. PMC 9150186. PMID 30489235.
Shkoporov AN, Khokhlova EV, Fitzgerald CB, Stockdale SR, Draper LA, Ross RP, Hill C (November 2018). "ΦCrAss001 represents the most abundant bacteriophage family in the human gut and infects Bacteroides intestinalis". Nature Communications. 9 (1): 4781. Bibcode:2018NatCo...9.4781S. doi:10.1038/s41467-018-07225-7. PMC 6235969. PMID 30429469.
Bayfield, Oliver W.; Shkoporov, Andrey N.; Yutin, Natalya; Khokhlova, Ekaterina V.; Smith, Jake L. R.; Hawkins, Dorothy E. D. P.; Koonin, Eugene V.; Hill, Colin; Antson, Alfred A. (2023). "Structural atlas of a human gut crassvirus". Nature. 617 (7960): 409–416. doi:10.1038/s41586-023-06019-2. ISSN 1476-4687. PMC 10172136. PMID 37138077.
Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.
Edwards, Robert A.; Vega, Alejandro A.; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizabeth A.; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. J.; Cazares, Adrian; de Jonge, Patrick A.; Desnues, Christelle (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. ISSN 2058-5276. PMC 7440971. PMID 31285584.
Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL (December 2012). "Reference-independent comparative metagenomics using cross-assembly: crAss". Bioinformatics. 28 (24): 3225–3231. doi:10.1093/bioinformatics/bts613. PMC 3519457. PMID 23074261.
Yutin N, Makarova KS, Gussow AB, Krupovic M, Segall A, Edwards RA, Koonin EV (January 2018). "Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut". Nature Microbiology. 3 (1): 38–46. doi:10.1038/s41564-017-0053-y. PMC 5736458. PMID 29133882.
Shkoporov AN, Khokhlova EV, Stephens N, Hueston C, Seymour S, Hryckowian AJ, et al. (August 2021). "Long-term persistence of crAss-like phage crAss001 is associated with phase variation in Bacteroides intestinalis". BMC Biology. 19 (1): 163. doi:10.1186/s12915-021-01084-3. PMC 8375218. PMID 34407825.
Guerin E, Shkoporov AN, Stockdale SR, Comas JC, Khokhlova EV, Clooney AG, et al. (April 2021). "Isolation and characterisation of ΦcrAss002, a crAss-like phage from the human gut that infects Bacteroides xylanisolvens". Microbiome. 9 (1): 89. doi:10.1186/s40168-021-01036-7. PMC 8042965. PMID 33845877.
Honap TP, Sankaranarayanan K, Schnorr SL, Ozga AT, Warinner C, Lewis CM (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. PMC 6961876. PMID 31940321.
García-Aljaro C, Ballesté E, Muniesa M, Jofre J (November 2017). "Determination of crAssphage in water samples and applicability for tracking human faecal pollution". Microbial Biotechnology. 10 (6): 1775–1780. doi:10.1111/1751-7915.12841. PMC 5658656. PMID 28925595.
Stachler E, Kelty C, Sivaganesan M, Li X, Bibby K, Shanks OC (August 2017). "Quantitative CrAssphage PCR Assays for Human Fecal Pollution Measurement". Environmental Science & Technology. 51 (16): 9146–9154. Bibcode:2017EnST...51.9146S. doi:10.1021/acs.est.7b02703. PMC 7350147. PMID 28700235.
Park GW, Ng TF, Freeland AL, Marconi VC, Boom JA, Staat MA, et al. (August 2020). "CrAssphage as a Novel Tool to Detect Human Fecal Contamination on Environmental Surfaces and Hands". Emerging Infectious Diseases. 26 (8): 1731–1739. doi:10.3201/eid2608.200346. PMC 7392416. PMID 32511090.
Edwards RA, Vega AA, Norman HM, Ohaeri M, Levi K, Dinsdale EA, et al. (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. PMC 7440971. PMID 31285584.
de Jonge PA, Wortelboer K, Scheithauer TP, van den Born BH, Zwinderman AH, Nobrega FL, et al. (June 2022). "Gut virome profiling identifies a widespread bacteriophage family associated with metabolic syndrome". Nature Communications. 13 (1): 3594. Bibcode:2022NatCo..13.3594D. doi:10.1038/s41467-022-31390-5. PMC 9226167. PMID 35739117.
Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. Bibcode:2020NatCo..11..280S. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
Camarillo-Guerrero, Luis F.; Almeida, Alexandre; Rangel-Pineros, Guillermo; Finn, Robert D.; Lawley, Trevor D. (2021-02-18). "Massive expansion of human gut bacteriophage diversity". Cell. 184 (4): 1098–1109.e9. doi:10.1016/j.cell.2021.01.029. ISSN 0092-8674. PMC 7895897. PMID 33606979. S2CID 221510077.

semanticscholar.org

api.semanticscholar.org

Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Falony, Gwen; Joossens, Marie; Vieira-Silva, Sara; Wang, Jun; Darzi, Youssef; Faust, Karoline; Kurilshikov, Alexander; Bonder, Marc Jan; Valles-Colomer, Mireia; Vandeputte, Doris; Tito, Raul Y.; Chaffron, Samuel; Rymenans, Leen; Verspecht, Chloë; De Sutter, Lise (2016-04-29). "Population-level analysis of gut microbiome variation". Science. 352 (6285): 560–564. Bibcode:2016Sci...352..560F. doi:10.1126/science.aad3503. ISSN 1095-9203. PMID 27126039. S2CID 2920612.
Guerin E, Shkoporov A, Stockdale SR, Clooney AG, Ryan FJ, Sutton TD, et al. (November 2018). "Biology and Taxonomy of crAss-like Bacteriophages, the Most Abundant Virus in the Human Gut". Cell Host & Microbe. 24 (5): 653–664.e6. doi:10.1016/j.chom.2018.10.002. hdl:11019/3445. PMID 30449316. S2CID 53950837.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.
Camarillo-Guerrero, Luis F.; Almeida, Alexandre; Rangel-Pineros, Guillermo; Finn, Robert D.; Lawley, Trevor D. (2021-02-18). "Massive expansion of human gut bacteriophage diversity". Cell. 184 (4): 1098–1109.e9. doi:10.1016/j.cell.2021.01.029. ISSN 0092-8674. PMC 7895897. PMID 33606979. S2CID 221510077.

web.archive.org

Luis Fernando Camarillo Guerrero: Integrative Analysis of the Human Gut Phageome Using a Metagenomics Approach Archived 2021-02-01 at the Wayback Machine, Thesis, Gonville & Caius College, University of Cambridge, August 2020, doi:10.17863/CAM.63973

worldcat.org

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Bayfield, Oliver W.; Shkoporov, Andrey N.; Yutin, Natalya; Khokhlova, Ekaterina V.; Smith, Jake L. R.; Hawkins, Dorothy E. D. P.; Koonin, Eugene V.; Hill, Colin; Antson, Alfred A. (2023). "Structural atlas of a human gut crassvirus". Nature. 617 (7960): 409–416. doi:10.1038/s41586-023-06019-2. ISSN 1476-4687. PMC 10172136. PMID 37138077.
Honap, Tanvi P.; Sankaranarayanan, Krithivasan; Schnorr, Stephanie L.; Ozga, Andrew T.; Warinner, Christina; Lewis, Cecil M. (2020-01-15). "Biogeographic study of human gut-associated crAssphage suggests impacts from industrialization and recent expansion". PLOS ONE. 15 (1): e0226930. Bibcode:2020PLoSO..1526930H. doi:10.1371/journal.pone.0226930. ISSN 1932-6203. PMC 6961876. PMID 31940321.
Edwards, Robert A.; Vega, Alejandro A.; Norman, Holly M.; Ohaeri, Maria; Levi, Kyle; Dinsdale, Elizabeth A.; Cinek, Ondrej; Aziz, Ramy K.; McNair, Katelyn; Barr, Jeremy J.; Bibby, Kyle; Brouns, Stan J. J.; Cazares, Adrian; de Jonge, Patrick A.; Desnues, Christelle (October 2019). "Global phylogeography and ancient evolution of the widespread human gut virus crAssphage". Nature Microbiology. 4 (10): 1727–1736. doi:10.1038/s41564-019-0494-6. ISSN 2058-5276. PMC 7440971. PMID 31285584.
Falony, Gwen; Joossens, Marie; Vieira-Silva, Sara; Wang, Jun; Darzi, Youssef; Faust, Karoline; Kurilshikov, Alexander; Bonder, Marc Jan; Valles-Colomer, Mireia; Vandeputte, Doris; Tito, Raul Y.; Chaffron, Samuel; Rymenans, Leen; Verspecht, Chloë; De Sutter, Lise (2016-04-29). "Population-level analysis of gut microbiome variation". Science. 352 (6285): 560–564. Bibcode:2016Sci...352..560F. doi:10.1126/science.aad3503. ISSN 1095-9203. PMID 27126039. S2CID 2920612.
Siranosian, Benjamin A.; Tamburini, Fiona B.; Sherlock, Gavin; Bhatt, Ami S. (2020-01-15). "Acquisition, transmission and strain diversity of human gut-colonizing crAss-like phages". Nature Communications. 11 (1): 280. Bibcode:2020NatCo..11..280S. doi:10.1038/s41467-019-14103-3. ISSN 2041-1723. PMC 6962324. PMID 31941900.
Drobysheva, Arina V.; Panafidina, Sofia A.; Kolesnik, Matvei V.; Klimuk, Evgeny I.; Minakhin, Leonid; Yakunina, Maria V.; Borukhov, Sergei; Nilsson, Emelie; Holmfeldt, Karin; Yutin, Natalya; Makarova, Kira S.; Koonin, Eugene V.; Severinov, Konstantin V.; Leiman, Petr G.; Sokolova, Maria L. (January 2021). "Structure and function of virion RNA polymerase of a crAss-like phage". Nature. 589 (7841): 306–309. Bibcode:2021Natur.589..306D. doi:10.1038/s41586-020-2921-5. ISSN 1476-4687. PMID 33208949. S2CID 227067794.
Camarillo-Guerrero, Luis F.; Almeida, Alexandre; Rangel-Pineros, Guillermo; Finn, Robert D.; Lawley, Trevor D. (2021-02-18). "Massive expansion of human gut bacteriophage diversity". Cell. 184 (4): 1098–1109.e9. doi:10.1016/j.cell.2021.01.029. ISSN 0092-8674. PMC 7895897. PMID 33606979. S2CID 221510077.