DNA-binding domain (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA-binding domain" in English language version.

refsWebsite

Global rank English rank

28nih.gov

4^th place

18doi.org

2^nd place

6harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

1uniprot.org

5,673^rd place

6,418^th place

1expasy.org

7,021^st place

7,383^rd place

1sciencedirect.com

149^th place

178^th place

doi.org

Swint-Kruse L, Matthews KS (April 2009). "Allostery in the LacI/GalR family: variations on a theme". Current Opinion in Microbiology. 12 (2): 129–37. doi:10.1016/j.mib.2009.01.009. PMC 2688824. PMID 19269243.
Malhotra S, Sowdhamini R (August 2013). "Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions". Nucleic Acids Research. 41 (15): 7212–9. doi:10.1093/nar/gkt505. PMC 3753632. PMID 23775796.
Malgieri G, Palmieri M, Russo L, Fattorusso R, Pedone PV, Isernia C (December 2015). "The prokaryotic zinc-finger: structure, function and comparison with the eukaryotic counterpart". The FEBS Journal. 282 (23): 4480–96. doi:10.1111/febs.13503. PMID 26365095.
Pabo CO, Peisach E, Grant RA (2001). "Design and selection of novel Cys2His2 zinc finger proteins". Annual Review of Biochemistry. 70: 313–40. doi:10.1146/annurev.biochem.70.1.313. PMID 11395410.
Murugesapillai D, et al. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Res. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ 3rd, Williams MC (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophys Rev. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD (May 2013). "Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains". Proceedings of the National Academy of Sciences of the United States of America. 110 (19): 7660–5. Bibcode:2013PNAS..110.7660L. doi:10.1073/pnas.1221734110. PMC 3651432. PMID 23610392.
Flynn RL, Zou L (August 2010). "Oligonucleotide/oligosaccharide-binding fold proteins: a growing family of genome guardians". Critical Reviews in Biochemistry and Molecular Biology. 45 (4): 266–75. doi:10.3109/10409238.2010.488216. PMC 2906097. PMID 20515430.
Theobald DL, Mitton-Fry RM, Wuttke DS (2003). "Nucleic acid recognition by OB-fold proteins". Annual Review of Biophysics and Biomolecular Structure. 32: 115–33. doi:10.1146/annurev.biophys.32.110601.142506. PMC 1564333. PMID 12598368.
Boch J, Bonas U (2010). "Xanthomonas AvrBs3 family-type III effectors: discovery and function". Annual Review of Phytopathology. 48: 419–36. doi:10.1146/annurev-phyto-080508-081936. PMID 19400638.
Moscou MJ, Bogdanove AJ (December 2009). "A simple cipher governs DNA recognition by TAL effectors". Science. 326 (5959): 1501. Bibcode:2009Sci...326.1501M. doi:10.1126/science.1178817. PMID 19933106. S2CID 6648530.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (December 2009). "Breaking the code of DNA binding specificity of TAL-type III effectors". Science. 326 (5959): 1509–12. Bibcode:2009Sci...326.1509B. doi:10.1126/science.1178811. PMID 19933107. S2CID 206522347.
Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL (February 2012). "The crystal structure of TAL effector PthXo1 bound to its DNA target". Science. 335 (6069): 716–9. Bibcode:2012Sci...335..716M. doi:10.1126/science.1216211. PMC 3427646. PMID 22223736.
Cuculis L, Abil Z, Zhao H, Schroeder CM (June 2015). "Direct observation of TALE protein dynamics reveals a two-state search mechanism". Nature Communications. 6: 7277. Bibcode:2015NatCo...6.7277C. doi:10.1038/ncomms8277. PMC 4458887. PMID 26027871.
de Lange O, Schreiber T, Schandry N, Radeck J, Braun KH, Koszinowski J, Heuer H, Strauß A, Lahaye T (August 2013). "Breaking the DNA-binding code of Ralstonia solanacearum TAL effectors provides new possibilities to generate plant resistance genes against bacterial wilt disease". The New Phytologist. 199 (3): 773–86. doi:10.1111/nph.12324. PMID 23692030.
Juillerat A, Bertonati C, Dubois G, Guyot V, Thomas S, Valton J, Beurdeley M, Silva GH, Daboussi F, Duchateau P (January 2014). "BurrH: a new modular DNA binding protein for genome engineering". Scientific Reports. 4: 3831. Bibcode:2014NatSR...4E3831J. doi:10.1038/srep03831. PMC 5379180. PMID 24452192.
de Lange O, Wolf C, Thiel P, Krüger J, Kleusch C, Kohlbacher O, Lahaye T (November 2015). "DNA-binding proteins from marine bacteria expand the known sequence diversity of TALE-like repeats". Nucleic Acids Research. 43 (20): 10065–80. doi:10.1093/nar/gkv1053. PMC 4787788. PMID 26481363.
Blanc-Mathieu, Romain; Dumas, Renaud; Turchi, Laura; Lucas, Jérémy; Parcy, François (July 2023). "Plant-TFClass: a structural classification for plant transcription factors". Trends in Plant Science. doi:10.1016/j.tplants.2023.06.023.

expasy.org

prosite.expasy.org

"HTH search at PROSITE". Expasy. Retrieved 2024-06-17.

harvard.edu

ui.adsabs.harvard.edu

Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD (May 2013). "Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains". Proceedings of the National Academy of Sciences of the United States of America. 110 (19): 7660–5. Bibcode:2013PNAS..110.7660L. doi:10.1073/pnas.1221734110. PMC 3651432. PMID 23610392.
Moscou MJ, Bogdanove AJ (December 2009). "A simple cipher governs DNA recognition by TAL effectors". Science. 326 (5959): 1501. Bibcode:2009Sci...326.1501M. doi:10.1126/science.1178817. PMID 19933106. S2CID 6648530.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (December 2009). "Breaking the code of DNA binding specificity of TAL-type III effectors". Science. 326 (5959): 1509–12. Bibcode:2009Sci...326.1509B. doi:10.1126/science.1178811. PMID 19933107. S2CID 206522347.
Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL (February 2012). "The crystal structure of TAL effector PthXo1 bound to its DNA target". Science. 335 (6069): 716–9. Bibcode:2012Sci...335..716M. doi:10.1126/science.1216211. PMC 3427646. PMID 22223736.
Cuculis L, Abil Z, Zhao H, Schroeder CM (June 2015). "Direct observation of TALE protein dynamics reveals a two-state search mechanism". Nature Communications. 6: 7277. Bibcode:2015NatCo...6.7277C. doi:10.1038/ncomms8277. PMC 4458887. PMID 26027871.
Juillerat A, Bertonati C, Dubois G, Guyot V, Thomas S, Valton J, Beurdeley M, Silva GH, Daboussi F, Duchateau P (January 2014). "BurrH: a new modular DNA binding protein for genome engineering". Scientific Reports. 4: 3831. Bibcode:2014NatSR...4E3831J. doi:10.1038/srep03831. PMC 5379180. PMID 24452192.

nih.gov

pubmed.ncbi.nlm.nih.gov

Swint-Kruse L, Matthews KS (April 2009). "Allostery in the LacI/GalR family: variations on a theme". Current Opinion in Microbiology. 12 (2): 129–37. doi:10.1016/j.mib.2009.01.009. PMC 2688824. PMID 19269243.
Malhotra S, Sowdhamini R (August 2013). "Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions". Nucleic Acids Research. 41 (15): 7212–9. doi:10.1093/nar/gkt505. PMC 3753632. PMID 23775796.
Malgieri G, Palmieri M, Russo L, Fattorusso R, Pedone PV, Isernia C (December 2015). "The prokaryotic zinc-finger: structure, function and comparison with the eukaryotic counterpart". The FEBS Journal. 282 (23): 4480–96. doi:10.1111/febs.13503. PMID 26365095.
Pabo CO, Peisach E, Grant RA (2001). "Design and selection of novel Cys2His2 zinc finger proteins". Annual Review of Biochemistry. 70: 313–40. doi:10.1146/annurev.biochem.70.1.313. PMID 11395410.
Murugesapillai D, et al. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Res. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ 3rd, Williams MC (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophys Rev. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD (May 2013). "Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains". Proceedings of the National Academy of Sciences of the United States of America. 110 (19): 7660–5. Bibcode:2013PNAS..110.7660L. doi:10.1073/pnas.1221734110. PMC 3651432. PMID 23610392.
Flynn RL, Zou L (August 2010). "Oligonucleotide/oligosaccharide-binding fold proteins: a growing family of genome guardians". Critical Reviews in Biochemistry and Molecular Biology. 45 (4): 266–75. doi:10.3109/10409238.2010.488216. PMC 2906097. PMID 20515430.
Theobald DL, Mitton-Fry RM, Wuttke DS (2003). "Nucleic acid recognition by OB-fold proteins". Annual Review of Biophysics and Biomolecular Structure. 32: 115–33. doi:10.1146/annurev.biophys.32.110601.142506. PMC 1564333. PMID 12598368.
Boch J, Bonas U (2010). "Xanthomonas AvrBs3 family-type III effectors: discovery and function". Annual Review of Phytopathology. 48: 419–36. doi:10.1146/annurev-phyto-080508-081936. PMID 19400638.
Moscou MJ, Bogdanove AJ (December 2009). "A simple cipher governs DNA recognition by TAL effectors". Science. 326 (5959): 1501. Bibcode:2009Sci...326.1501M. doi:10.1126/science.1178817. PMID 19933106. S2CID 6648530.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (December 2009). "Breaking the code of DNA binding specificity of TAL-type III effectors". Science. 326 (5959): 1509–12. Bibcode:2009Sci...326.1509B. doi:10.1126/science.1178811. PMID 19933107. S2CID 206522347.
Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL (February 2012). "The crystal structure of TAL effector PthXo1 bound to its DNA target". Science. 335 (6069): 716–9. Bibcode:2012Sci...335..716M. doi:10.1126/science.1216211. PMC 3427646. PMID 22223736.
Cuculis L, Abil Z, Zhao H, Schroeder CM (June 2015). "Direct observation of TALE protein dynamics reveals a two-state search mechanism". Nature Communications. 6: 7277. Bibcode:2015NatCo...6.7277C. doi:10.1038/ncomms8277. PMC 4458887. PMID 26027871.
de Lange O, Schreiber T, Schandry N, Radeck J, Braun KH, Koszinowski J, Heuer H, Strauß A, Lahaye T (August 2013). "Breaking the DNA-binding code of Ralstonia solanacearum TAL effectors provides new possibilities to generate plant resistance genes against bacterial wilt disease". The New Phytologist. 199 (3): 773–86. doi:10.1111/nph.12324. PMID 23692030.
Juillerat A, Bertonati C, Dubois G, Guyot V, Thomas S, Valton J, Beurdeley M, Silva GH, Daboussi F, Duchateau P (January 2014). "BurrH: a new modular DNA binding protein for genome engineering". Scientific Reports. 4: 3831. Bibcode:2014NatSR...4E3831J. doi:10.1038/srep03831. PMC 5379180. PMID 24452192.
de Lange O, Wolf C, Thiel P, Krüger J, Kleusch C, Kohlbacher O, Lahaye T (November 2015). "DNA-binding proteins from marine bacteria expand the known sequence diversity of TALE-like repeats". Nucleic Acids Research. 43 (20): 10065–80. doi:10.1093/nar/gkv1053. PMC 4787788. PMID 26481363.

ncbi.nlm.nih.gov

Swint-Kruse L, Matthews KS (April 2009). "Allostery in the LacI/GalR family: variations on a theme". Current Opinion in Microbiology. 12 (2): 129–37. doi:10.1016/j.mib.2009.01.009. PMC 2688824. PMID 19269243.
Malhotra S, Sowdhamini R (August 2013). "Genome-wide survey of DNA-binding proteins in Arabidopsis thaliana: analysis of distribution and functions". Nucleic Acids Research. 41 (15): 7212–9. doi:10.1093/nar/gkt505. PMC 3753632. PMID 23775796.
Murugesapillai D, et al. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Res. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai D, McCauley MJ, Maher LJ 3rd, Williams MC (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophys Rev. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Lohse MB, Hernday AD, Fordyce PM, Noiman L, Sorrells TR, Hanson-Smith V, Nobile CJ, DeRisi JL, Johnson AD (May 2013). "Identification and characterization of a previously undescribed family of sequence-specific DNA-binding domains". Proceedings of the National Academy of Sciences of the United States of America. 110 (19): 7660–5. Bibcode:2013PNAS..110.7660L. doi:10.1073/pnas.1221734110. PMC 3651432. PMID 23610392.
Flynn RL, Zou L (August 2010). "Oligonucleotide/oligosaccharide-binding fold proteins: a growing family of genome guardians". Critical Reviews in Biochemistry and Molecular Biology. 45 (4): 266–75. doi:10.3109/10409238.2010.488216. PMC 2906097. PMID 20515430.
Theobald DL, Mitton-Fry RM, Wuttke DS (2003). "Nucleic acid recognition by OB-fold proteins". Annual Review of Biophysics and Biomolecular Structure. 32: 115–33. doi:10.1146/annurev.biophys.32.110601.142506. PMC 1564333. PMID 12598368.
Mak AN, Bradley P, Cernadas RA, Bogdanove AJ, Stoddard BL (February 2012). "The crystal structure of TAL effector PthXo1 bound to its DNA target". Science. 335 (6069): 716–9. Bibcode:2012Sci...335..716M. doi:10.1126/science.1216211. PMC 3427646. PMID 22223736.
Cuculis L, Abil Z, Zhao H, Schroeder CM (June 2015). "Direct observation of TALE protein dynamics reveals a two-state search mechanism". Nature Communications. 6: 7277. Bibcode:2015NatCo...6.7277C. doi:10.1038/ncomms8277. PMC 4458887. PMID 26027871.
Juillerat A, Bertonati C, Dubois G, Guyot V, Thomas S, Valton J, Beurdeley M, Silva GH, Daboussi F, Duchateau P (January 2014). "BurrH: a new modular DNA binding protein for genome engineering". Scientific Reports. 4: 3831. Bibcode:2014NatSR...4E3831J. doi:10.1038/srep03831. PMC 5379180. PMID 24452192.
de Lange O, Wolf C, Thiel P, Krüger J, Kleusch C, Kohlbacher O, Lahaye T (November 2015). "DNA-binding proteins from marine bacteria expand the known sequence diversity of TALE-like repeats". Nucleic Acids Research. 43 (20): 10065–80. doi:10.1093/nar/gkv1053. PMC 4787788. PMID 26481363.

sciencedirect.com

Blanc-Mathieu, Romain; Dumas, Renaud; Turchi, Laura; Lucas, Jérémy; Parcy, François (July 2023). "Plant-TFClass: a structural classification for plant transcription factors". Trends in Plant Science. doi:10.1016/j.tplants.2023.06.023.

semanticscholar.org

api.semanticscholar.org

Moscou MJ, Bogdanove AJ (December 2009). "A simple cipher governs DNA recognition by TAL effectors". Science. 326 (5959): 1501. Bibcode:2009Sci...326.1501M. doi:10.1126/science.1178817. PMID 19933106. S2CID 6648530.
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, Kay S, Lahaye T, Nickstadt A, Bonas U (December 2009). "Breaking the code of DNA binding specificity of TAL-type III effectors". Science. 326 (5959): 1509–12. Bibcode:2009Sci...326.1509B. doi:10.1126/science.1178811. PMID 19933107. S2CID 206522347.

uniprot.org

"reviewed:yes AND organism:"Homo sapiens (Human) [9606]" AND proteome:up000005640 in UniProtKB". www.uniprot.org. Retrieved 2017-10-25.