DNA-binding protein (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA-binding protein" in English language version.

refsWebsite

Global rank English rank

49nih.gov

4^th place

35doi.org

2^nd place

7harvard.edu

18^th place

17^th place

6semanticscholar.org

11^th place

8^th place

3worldcat.org

5^th place

2rcsb.org

8,838^th place

8,783^rd place

1psu.edu

207^th place

136^th place

1arxiv.org

69^th place

59^th place

1nature.com

234^th place

397^th place

arxiv.org

Teif V.B.; Rippe K. (2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.

doi.org

Pabo CO, Sauer RT (1984). "Protein-DNA recognition". Annu. Rev. Biochem. 53 (1): 293–321. doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
Dickerson R.E. (1983). "The DNA helix and how it is read". Sci Am. 249 (6): 94–111. Bibcode:1983SciAm.249f..94D. doi:10.1038/scientificamerican1283-94.
Zimmer C, Wähnert U (1986). "Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material". Prog. Biophys. Mol. Biol. 47 (1): 31–112. doi:10.1016/0079-6107(86)90005-2. PMID 2422697.
Dervan PB (April 1986). "Design of sequence-specific DNA-binding molecules". Science. 232 (4749): 464–71. Bibcode:1986Sci...232..464D. doi:10.1126/science.2421408. PMID 2421408.
Sandman K, Pereira S, Reeve J (1998). "Diversity of prokaryotic chromosomal proteins and the origin of the nucleosome". Cell Mol Life Sci. 54 (12): 1350–64. doi:10.1007/s000180050259. PMC 11147202. PMID 9893710. S2CID 21101836.
Dame RT (2005). "The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin". Mol. Microbiol. 56 (4): 858–70. doi:10.1111/j.1365-2958.2005.04598.x. PMID 15853876.
Luger K, Mäder A, Richmond R, Sargent D, Richmond T (1997). "Crystal structure of the nucleosome core particle at 2.8 A resolution". Nature. 389 (6648): 251–60. Bibcode:1997Natur.389..251L. doi:10.1038/38444. PMID 9305837. S2CID 4328827.
Jenuwein T, Allis C (2001). "Translating the histone code". Science. 293 (5532): 1074–80. CiteSeerX 10.1.1.453.900. doi:10.1126/science.1063127. PMID 11498575. S2CID 1883924.
Ito T (2003). "Nucleosome assembly and remodeling". Protein Complexes that Modify Chromatin. Current Topics in Microbiology and Immunology. Vol. 274. pp. 1–22. doi:10.1007/978-3-642-55747-7_1. ISBN 978-3-642-62909-9. PMID 12596902. {{cite book}}: |journal= ignored (help)
Thomas J (2001). "HMG1 and 2: architectural DNA-binding proteins". Biochem Soc Trans. 29 (Pt 4): 395–401. doi:10.1042/BST0290395. PMID 11497996.
Murugesapillai, Divakaran; McCauley, Micah J.; Huo, Ran; Nelson Holte, Molly H.; Stepanyants, Armen; Maher, L. James; Israeloff, Nathan E.; Williams, Mark C. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai, Divakaran; McCauley, Micah J.; Maher, L. James; Williams, Mark C. (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Grosschedl R, Giese K, Pagel J (1994). "HMG domain proteins: architectural elements in the assembly of nucleoprotein structures". Trends Genet. 10 (3): 94–100. doi:10.1016/0168-9525(94)90232-1. PMID 8178371.
Prakash, Ajit; Shin, Joon; Rajan, Sreekanth; Yoon, Ho Sup (2016-04-07). "Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin". Nucleic Acids Research. 44 (6): 2909–2925. doi:10.1093/nar/gkw001. ISSN 0305-1048. PMC 4824100. PMID 26762975.
Iftode C, Daniely Y, Borowiec J (1999). "Replication protein A (RPA): the eukaryotic SSB". Crit Rev Biochem Mol Biol. 34 (3): 141–80. doi:10.1080/10409239991209255. PMID 10473346.
Myers L, Kornberg R (2000). "Mediator of transcriptional regulation". Annu Rev Biochem. 69 (1): 729–49. doi:10.1146/annurev.biochem.69.1.729. PMID 10966474.
Spiegelman B, Heinrich R (2004). "Biological control throughs regulated transcriptional coactivators". Cell. 119 (2): 157–67. doi:10.1016/j.cell.2004.09.037. PMID 15479634. S2CID 14668705.
Li Z, Van Calcar S, Qu C, Cavenee W, Zhang M, Ren B (2003). "A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells". Proc Natl Acad Sci USA. 100 (14): 8164–9. Bibcode:2003PNAS..100.8164L. doi:10.1073/pnas.1332764100. PMC 166200. PMID 12808131.
Pabo C, Sauer R (1984). "Protein-DNA recognition". Annu Rev Biochem. 53 (1): 293–321. doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
Teif V.B.; Rippe K. (2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.
Wong KC, Chan TM, Peng C, Li Y, Zhang Z (2013). "DNA Motif Elucidation using belief propagation". Nucleic Acids Research. 41 (16): e153. doi:10.1093/nar/gkt574. PMC 3763557. PMID 23814189.
Mitra, Raktim; Li, Jinsen; Sagendorf, Jared M.; Jiang, Yibei; Cohen, Ari S.; Chiu, Tsu-Pei; Glasscock, Cameron J.; Rohs, Remo (2024-08-05). "Geometric deep learning of protein–DNA binding specificity". Nature Methods: 1–10. doi:10.1038/s41592-024-02372-w. ISSN 1548-7091. PMC 11399107.
Bewley CA, Gronenborn AM, Clore GM (1998). "Minor groove-binding architectural proteins: structure, function, and DNA recognition". Annu Rev Biophys Biomol Struct. 27: 105–31. doi:10.1146/annurev.biophys.27.1.105. PMC 4781445. PMID 9646864.
Ganji, Mahipal; Docter, Margreet; Le Grice, Stuart F. J.; Abbondanzieri, Elio A. (2016-09-30). "DNA binding proteins explore multiple local configurations during docking via rapid rebinding". Nucleic Acids Research. 44 (17): 8376–8384. doi:10.1093/nar/gkw666. ISSN 0305-1048. PMC 5041478. PMID 27471033.
Clark KJ, Voytas DF, Ekker SC (September 2011). "A TALE of two nucleases: gene targeting for the masses?". Zebrafish. 8 (3): 147–9. doi:10.1089/zeb.2011.9993. PMC 3174730. PMID 21929364.
Cai YH, Huang H (July 2012). "Advances in the study of protein–DNA interaction". Amino Acids. 43 (3): 1141–6. doi:10.1007/s00726-012-1377-9. PMID 22842750. S2CID 310256.
Fried M, Crothers DM (1981). "Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis". Nucleic Acids Res. 9 (23): 6505–6525. doi:10.1093/nar/9.23.6505. PMC 327619. PMID 6275366.
Garner MM, Revzin A (1981). "A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system". Nucleic Acids Res. 9 (13): 3047–3060. doi:10.1093/nar/9.13.3047. PMC 327330. PMID 6269071.
Brand LH, Kirchler T, Hummel S, Chaban C, Wanke D (2010). "DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro". Plant Methods. 25 (6): 25. doi:10.1186/1746-4811-6-25. PMC 3003642. PMID 21108821.
Fischer SM, Böser A, Hirsch JP, Wanke D (2016). "Quantitative Analysis of Protein–DNA Interaction by qDPI-ELISA". Plant Synthetic Promoters. Methods Mol. Biol. Vol. 1482. pp. 49–66. doi:10.1007/978-1-4939-6396-6_4. ISBN 978-1-4939-6394-2. PMID 27557760.
Hecker A, Brand LH, Peter S, Simoncello N, Kilian J, Harter K, Gaudin V, Wanke D (2015). "The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs". Plant Physiol. 163 (3): 1013–1024. doi:10.1104/pp.15.00409. PMC 4741334. PMID 26025051.
Brand LH, Henneges C, Schüssler A, Kolukisaoglu HÜ, Koch G, Wallmeroth N, Hecker A, Thurow K, Zell A, Harter K, Wanke D (2013). "Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA". PLOS ONE. 8 (10): e75177. Bibcode:2013PLoSO...875177B. doi:10.1371/journal.pone.0075177. PMC 3795721. PMID 24146751.
Galas DJ, Schmitz A (1978). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Res. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. PMC 342238. PMID 212715.
Hianik T, Wang J (2009). "Electrochemical Aptasensors – Recent Achievements and Perspectives". Electroanalysis. 21 (11): 1223–1235. doi:10.1002/elan.200904566.
Gosai A, et al. (2016). "Electrical Stimulus Controlled Binding/Unbinding of Human Thrombin-Aptamer Complex". Sci. Rep. 6: 37449. Bibcode:2016NatSR...637449G. doi:10.1038/srep37449. PMC 5118750. PMID 27874042.

harvard.edu

ui.adsabs.harvard.edu

Dickerson R.E. (1983). "The DNA helix and how it is read". Sci Am. 249 (6): 94–111. Bibcode:1983SciAm.249f..94D. doi:10.1038/scientificamerican1283-94.
Dervan PB (April 1986). "Design of sequence-specific DNA-binding molecules". Science. 232 (4749): 464–71. Bibcode:1986Sci...232..464D. doi:10.1126/science.2421408. PMID 2421408.
Luger K, Mäder A, Richmond R, Sargent D, Richmond T (1997). "Crystal structure of the nucleosome core particle at 2.8 A resolution". Nature. 389 (6648): 251–60. Bibcode:1997Natur.389..251L. doi:10.1038/38444. PMID 9305837. S2CID 4328827.
Li Z, Van Calcar S, Qu C, Cavenee W, Zhang M, Ren B (2003). "A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells". Proc Natl Acad Sci USA. 100 (14): 8164–9. Bibcode:2003PNAS..100.8164L. doi:10.1073/pnas.1332764100. PMC 166200. PMID 12808131.
Teif V.B.; Rippe K. (2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.
Brand LH, Henneges C, Schüssler A, Kolukisaoglu HÜ, Koch G, Wallmeroth N, Hecker A, Thurow K, Zell A, Harter K, Wanke D (2013). "Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA". PLOS ONE. 8 (10): e75177. Bibcode:2013PLoSO...875177B. doi:10.1371/journal.pone.0075177. PMC 3795721. PMID 24146751.
Gosai A, et al. (2016). "Electrical Stimulus Controlled Binding/Unbinding of Human Thrombin-Aptamer Complex". Sci. Rep. 6: 37449. Bibcode:2016NatSR...637449G. doi:10.1038/srep37449. PMC 5118750. PMID 27874042.

nature.com

Mitra, Raktim; Li, Jinsen; Sagendorf, Jared M.; Jiang, Yibei; Cohen, Ari S.; Chiu, Tsu-Pei; Glasscock, Cameron J.; Rohs, Remo (2024-08-05). "Geometric deep learning of protein–DNA binding specificity". Nature Methods: 1–10. doi:10.1038/s41592-024-02372-w. ISSN 1548-7091. PMC 11399107.

nih.gov

pubmed.ncbi.nlm.nih.gov

Pabo CO, Sauer RT (1984). "Protein-DNA recognition". Annu. Rev. Biochem. 53 (1): 293–321. doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
Zimmer C, Wähnert U (1986). "Nonintercalating DNA-binding ligands: specificity of the interaction and their use as tools in biophysical, biochemical and biological investigations of the genetic material". Prog. Biophys. Mol. Biol. 47 (1): 31–112. doi:10.1016/0079-6107(86)90005-2. PMID 2422697.
Dervan PB (April 1986). "Design of sequence-specific DNA-binding molecules". Science. 232 (4749): 464–71. Bibcode:1986Sci...232..464D. doi:10.1126/science.2421408. PMID 2421408.
Sandman K, Pereira S, Reeve J (1998). "Diversity of prokaryotic chromosomal proteins and the origin of the nucleosome". Cell Mol Life Sci. 54 (12): 1350–64. doi:10.1007/s000180050259. PMC 11147202. PMID 9893710. S2CID 21101836.
Dame RT (2005). "The role of nucleoid-associated proteins in the organization and compaction of bacterial chromatin". Mol. Microbiol. 56 (4): 858–70. doi:10.1111/j.1365-2958.2005.04598.x. PMID 15853876.
Luger K, Mäder A, Richmond R, Sargent D, Richmond T (1997). "Crystal structure of the nucleosome core particle at 2.8 A resolution". Nature. 389 (6648): 251–60. Bibcode:1997Natur.389..251L. doi:10.1038/38444. PMID 9305837. S2CID 4328827.
Jenuwein T, Allis C (2001). "Translating the histone code". Science. 293 (5532): 1074–80. CiteSeerX 10.1.1.453.900. doi:10.1126/science.1063127. PMID 11498575. S2CID 1883924.
Ito T (2003). "Nucleosome assembly and remodeling". Protein Complexes that Modify Chromatin. Current Topics in Microbiology and Immunology. Vol. 274. pp. 1–22. doi:10.1007/978-3-642-55747-7_1. ISBN 978-3-642-62909-9. PMID 12596902. {{cite book}}: |journal= ignored (help)
Thomas J (2001). "HMG1 and 2: architectural DNA-binding proteins". Biochem Soc Trans. 29 (Pt 4): 395–401. doi:10.1042/BST0290395. PMID 11497996.
Murugesapillai, Divakaran; McCauley, Micah J.; Huo, Ran; Nelson Holte, Molly H.; Stepanyants, Armen; Maher, L. James; Israeloff, Nathan E.; Williams, Mark C. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai, Divakaran; McCauley, Micah J.; Maher, L. James; Williams, Mark C. (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Grosschedl R, Giese K, Pagel J (1994). "HMG domain proteins: architectural elements in the assembly of nucleoprotein structures". Trends Genet. 10 (3): 94–100. doi:10.1016/0168-9525(94)90232-1. PMID 8178371.
Prakash, Ajit; Shin, Joon; Rajan, Sreekanth; Yoon, Ho Sup (2016-04-07). "Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin". Nucleic Acids Research. 44 (6): 2909–2925. doi:10.1093/nar/gkw001. ISSN 0305-1048. PMC 4824100. PMID 26762975.
Iftode C, Daniely Y, Borowiec J (1999). "Replication protein A (RPA): the eukaryotic SSB". Crit Rev Biochem Mol Biol. 34 (3): 141–80. doi:10.1080/10409239991209255. PMID 10473346.
Myers L, Kornberg R (2000). "Mediator of transcriptional regulation". Annu Rev Biochem. 69 (1): 729–49. doi:10.1146/annurev.biochem.69.1.729. PMID 10966474.
Spiegelman B, Heinrich R (2004). "Biological control throughs regulated transcriptional coactivators". Cell. 119 (2): 157–67. doi:10.1016/j.cell.2004.09.037. PMID 15479634. S2CID 14668705.
Li Z, Van Calcar S, Qu C, Cavenee W, Zhang M, Ren B (2003). "A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells". Proc Natl Acad Sci USA. 100 (14): 8164–9. Bibcode:2003PNAS..100.8164L. doi:10.1073/pnas.1332764100. PMC 166200. PMID 12808131.
Pabo C, Sauer R (1984). "Protein-DNA recognition". Annu Rev Biochem. 53 (1): 293–321. doi:10.1146/annurev.bi.53.070184.001453. PMID 6236744.
Teif V.B.; Rippe K. (2010). "Statistical-mechanical lattice models for protein-DNA binding in chromatin". Journal of Physics: Condensed Matter. 22 (41): 414105. arXiv:1004.5514. Bibcode:2010JPCM...22O4105T. doi:10.1088/0953-8984/22/41/414105. PMID 21386588. S2CID 103345.
Wong KC, Chan TM, Peng C, Li Y, Zhang Z (2013). "DNA Motif Elucidation using belief propagation". Nucleic Acids Research. 41 (16): e153. doi:10.1093/nar/gkt574. PMC 3763557. PMID 23814189.
Bewley CA, Gronenborn AM, Clore GM (1998). "Minor groove-binding architectural proteins: structure, function, and DNA recognition". Annu Rev Biophys Biomol Struct. 27: 105–31. doi:10.1146/annurev.biophys.27.1.105. PMC 4781445. PMID 9646864.
Ganji, Mahipal; Docter, Margreet; Le Grice, Stuart F. J.; Abbondanzieri, Elio A. (2016-09-30). "DNA binding proteins explore multiple local configurations during docking via rapid rebinding". Nucleic Acids Research. 44 (17): 8376–8384. doi:10.1093/nar/gkw666. ISSN 0305-1048. PMC 5041478. PMID 27471033.
Clark KJ, Voytas DF, Ekker SC (September 2011). "A TALE of two nucleases: gene targeting for the masses?". Zebrafish. 8 (3): 147–9. doi:10.1089/zeb.2011.9993. PMC 3174730. PMID 21929364.
Cai YH, Huang H (July 2012). "Advances in the study of protein–DNA interaction". Amino Acids. 43 (3): 1141–6. doi:10.1007/s00726-012-1377-9. PMID 22842750. S2CID 310256.
Fried M, Crothers DM (1981). "Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis". Nucleic Acids Res. 9 (23): 6505–6525. doi:10.1093/nar/9.23.6505. PMC 327619. PMID 6275366.
Garner MM, Revzin A (1981). "A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system". Nucleic Acids Res. 9 (13): 3047–3060. doi:10.1093/nar/9.13.3047. PMC 327330. PMID 6269071.
Brand LH, Kirchler T, Hummel S, Chaban C, Wanke D (2010). "DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro". Plant Methods. 25 (6): 25. doi:10.1186/1746-4811-6-25. PMC 3003642. PMID 21108821.
Fischer SM, Böser A, Hirsch JP, Wanke D (2016). "Quantitative Analysis of Protein–DNA Interaction by qDPI-ELISA". Plant Synthetic Promoters. Methods Mol. Biol. Vol. 1482. pp. 49–66. doi:10.1007/978-1-4939-6396-6_4. ISBN 978-1-4939-6394-2. PMID 27557760.
Hecker A, Brand LH, Peter S, Simoncello N, Kilian J, Harter K, Gaudin V, Wanke D (2015). "The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs". Plant Physiol. 163 (3): 1013–1024. doi:10.1104/pp.15.00409. PMC 4741334. PMID 26025051.
Brand LH, Henneges C, Schüssler A, Kolukisaoglu HÜ, Koch G, Wallmeroth N, Hecker A, Thurow K, Zell A, Harter K, Wanke D (2013). "Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA". PLOS ONE. 8 (10): e75177. Bibcode:2013PLoSO...875177B. doi:10.1371/journal.pone.0075177. PMC 3795721. PMID 24146751.
Galas DJ, Schmitz A (1978). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Res. 5 (9): 3157–3170. doi:10.1093/nar/5.9.3157. PMC 342238. PMID 212715.
Gosai A, et al. (2016). "Electrical Stimulus Controlled Binding/Unbinding of Human Thrombin-Aptamer Complex". Sci. Rep. 6: 37449. Bibcode:2016NatSR...637449G. doi:10.1038/srep37449. PMC 5118750. PMID 27874042.

ncbi.nlm.nih.gov

Sandman K, Pereira S, Reeve J (1998). "Diversity of prokaryotic chromosomal proteins and the origin of the nucleosome". Cell Mol Life Sci. 54 (12): 1350–64. doi:10.1007/s000180050259. PMC 11147202. PMID 9893710. S2CID 21101836.
Murugesapillai, Divakaran; McCauley, Micah J.; Huo, Ran; Nelson Holte, Molly H.; Stepanyants, Armen; Maher, L. James; Israeloff, Nathan E.; Williams, Mark C. (2014). "DNA bridging and looping by HMO1 provides a mechanism for stabilizing nucleosome-free chromatin". Nucleic Acids Research. 42 (14): 8996–9004. doi:10.1093/nar/gku635. PMC 4132745. PMID 25063301.
Murugesapillai, Divakaran; McCauley, Micah J.; Maher, L. James; Williams, Mark C. (2017). "Single-molecule studies of high-mobility group B architectural DNA bending proteins". Biophysical Reviews. 9 (1): 17–40. doi:10.1007/s12551-016-0236-4. PMC 5331113. PMID 28303166.
Prakash, Ajit; Shin, Joon; Rajan, Sreekanth; Yoon, Ho Sup (2016-04-07). "Structural basis of nucleic acid recognition by FK506-binding protein 25 (FKBP25), a nuclear immunophilin". Nucleic Acids Research. 44 (6): 2909–2925. doi:10.1093/nar/gkw001. ISSN 0305-1048. PMC 4824100. PMID 26762975.
Li Z, Van Calcar S, Qu C, Cavenee W, Zhang M, Ren B (2003). "A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells". Proc Natl Acad Sci USA. 100 (14): 8164–9. Bibcode:2003PNAS..100.8164L. doi:10.1073/pnas.1332764100. PMC 166200. PMID 12808131.
Wong KC, Chan TM, Peng C, Li Y, Zhang Z (2013). "DNA Motif Elucidation using belief propagation". Nucleic Acids Research. 41 (16): e153. doi:10.1093/nar/gkt574. PMC 3763557. PMID 23814189.
Mitra, Raktim; Li, Jinsen; Sagendorf, Jared M.; Jiang, Yibei; Cohen, Ari S.; Chiu, Tsu-Pei; Glasscock, Cameron J.; Rohs, Remo (2024-08-05). "Geometric deep learning of protein–DNA binding specificity". Nature Methods: 1–10. doi:10.1038/s41592-024-02372-w. ISSN 1548-7091. PMC 11399107.
Bewley CA, Gronenborn AM, Clore GM (1998). "Minor groove-binding architectural proteins: structure, function, and DNA recognition". Annu Rev Biophys Biomol Struct. 27: 105–31. doi:10.1146/annurev.biophys.27.1.105. PMC 4781445. PMID 9646864.
Ganji, Mahipal; Docter, Margreet; Le Grice, Stuart F. J.; Abbondanzieri, Elio A. (2016-09-30). "DNA binding proteins explore multiple local configurations during docking via rapid rebinding". Nucleic Acids Research. 44 (17): 8376–8384. doi:10.1093/nar/gkw666. ISSN 0305-1048. PMC 5041478. PMID 27471033.
Clark KJ, Voytas DF, Ekker SC (September 2011). "A TALE of two nucleases: gene targeting for the masses?". Zebrafish. 8 (3): 147–9. doi:10.1089/zeb.2011.9993. PMC 3174730. PMID 21929364.
Fried M, Crothers DM (1981). "Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis". Nucleic Acids Res. 9 (23): 6505–6525. doi:10.1093/nar/9.23.6505. PMC 327619. PMID 6275366.
Garner MM, Revzin A (1981). "A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: application to components of the Escherichia coli lactose operon regulatory system". Nucleic Acids Res. 9 (13): 3047–3060. doi:10.1093/nar/9.13.3047. PMC 327330. PMID 6269071.
Brand LH, Kirchler T, Hummel S, Chaban C, Wanke D (2010). "DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro". Plant Methods. 25 (6): 25. doi:10.1186/1746-4811-6-25. PMC 3003642. PMID 21108821.
Hecker A, Brand LH, Peter S, Simoncello N, Kilian J, Harter K, Gaudin V, Wanke D (2015). "The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs". Plant Physiol. 163 (3): 1013–1024. doi:10.1104/pp.15.00409. PMC 4741334. PMID 26025051.
Brand LH, Henneges C, Schüssler A, Kolukisaoglu HÜ, Koch G, Wallmeroth N, Hecker A, Thurow K, Zell A, Harter K, Wanke D (2013). "Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA". PLOS ONE. 8 (10): e75177. Bibcode:2013PLoSO...875177B. doi:10.1371/journal.pone.0075177. PMC 3795721. PMID 24146751.
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