Reed JL, Famili I, Thiele I, Palsson BO (February 2006). "Towards multidimensional genome annotation". Nature Reviews. Genetics. 7 (2): 130–141. doi:10.1038/nrg1769. PMID16418748. S2CID13107786.
Abril JF, Castellano S (2019). "Genome Annotation". In Ranganathan S, Nakai K, Schonbach C, Gribskov M (eds.). Encyclopedia of Bioinformatics and Computational Biology (1st ed.). Elsevier Science. pp. 195–209. doi:10.1016/B978-0-12-809633-8.20226-4. ISBN978-0-12-811432-2. S2CID226248103.
Grosjean H, Fiers W (June 1982). "Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes". Gene. 18 (3): 199–209. doi:10.1016/0378-1119(82)90157-3. PMID6751939.
Garber M, Grabherr MG, Guttman M, Trapnell C (June 2011). "Computational methods for transcriptome annotation and quantification using RNA-seq". Nature Methods. 8 (6): 469–477. doi:10.1038/nmeth.1613. PMID21623353. S2CID205419756.
McHardy AC, Kloetgen A (2017). "Finding Genes in Genome Sequence". In Keith JM (ed.). Bioinformatics. Methods in Molecular Biology. Vol. 1525 (Second ed.). New York: Springer. pp. 271–291. doi:10.1007/978-1-4939-6622-6_11. ISBN978-1-4939-6622-6. PMID27896725.
Brent MR, Guigó R (June 2004). "Recent advances in gene structure prediction". Current Opinion in Structural Biology. 14 (3): 264–272. doi:10.1016/j.sbi.2004.05.007. PMID15193305.
Saxena R, Bishnoi R, Singla D (2021). "Gene Ontology: application and importance in functional annotation of the genomic data". In Singh B, Pathak RK (eds.). Bioinformatics : methods and applications. London: Academic Press. pp. 145–157. doi:10.1016/B978-0-323-89775-4.00015-8. ISBN978-0-323-89775-4.
Cooper L, Jaiswal P (2016). "The Plant Ontology: A Tool for Plant Genomics". In Edwards D (ed.). Plant Bioinformatics. Methods in Molecular Biology. Vol. 1374 (2nd ed.). Totowa, N.J.: Humana Press. pp. 89–114. doi:10.1007/978-1-4939-3167-5_5. ISBN978-1-4939-3167-5. PMID26519402.
Grosjean H, Fiers W (June 1982). "Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes". Gene. 18 (3): 199–209. doi:10.1016/0378-1119(82)90157-3. PMID6751939.
Garber M, Grabherr MG, Guttman M, Trapnell C (June 2011). "Computational methods for transcriptome annotation and quantification using RNA-seq". Nature Methods. 8 (6): 469–477. doi:10.1038/nmeth.1613. PMID21623353. S2CID205419756.
McHardy AC, Kloetgen A (2017). "Finding Genes in Genome Sequence". In Keith JM (ed.). Bioinformatics. Methods in Molecular Biology. Vol. 1525 (Second ed.). New York: Springer. pp. 271–291. doi:10.1007/978-1-4939-6622-6_11. ISBN978-1-4939-6622-6. PMID27896725.
Brent MR, Guigó R (June 2004). "Recent advances in gene structure prediction". Current Opinion in Structural Biology. 14 (3): 264–272. doi:10.1016/j.sbi.2004.05.007. PMID15193305.
Cooper L, Jaiswal P (2016). "The Plant Ontology: A Tool for Plant Genomics". In Edwards D (ed.). Plant Bioinformatics. Methods in Molecular Biology. Vol. 1374 (2nd ed.). Totowa, N.J.: Humana Press. pp. 89–114. doi:10.1007/978-1-4939-3167-5_5. ISBN978-1-4939-3167-5. PMID26519402.
Reed JL, Famili I, Thiele I, Palsson BO (February 2006). "Towards multidimensional genome annotation". Nature Reviews. Genetics. 7 (2): 130–141. doi:10.1038/nrg1769. PMID16418748. S2CID13107786.
Abril JF, Castellano S (2019). "Genome Annotation". In Ranganathan S, Nakai K, Schonbach C, Gribskov M (eds.). Encyclopedia of Bioinformatics and Computational Biology (1st ed.). Elsevier Science. pp. 195–209. doi:10.1016/B978-0-12-809633-8.20226-4. ISBN978-0-12-811432-2. S2CID226248103.
Yandell M, Ence D (April 2012). "A beginner's guide to eukaryotic genome annotation". Nature Reviews. Genetics. 13 (5): 329–342. doi:10.1038/nrg3174. PMID22510764. S2CID3352427.
Alexander RP, Fang G, Rozowsky J, Snyder M, Gerstein MB (August 2010). "Annotating non-coding regions of the genome". Nature Reviews. Genetics. 11 (8): 559–571. doi:10.1038/nrg2814. PMID20628352. S2CID6617359.
Garber M, Grabherr MG, Guttman M, Trapnell C (June 2011). "Computational methods for transcriptome annotation and quantification using RNA-seq". Nature Methods. 8 (6): 469–477. doi:10.1038/nmeth.1613. PMID21623353. S2CID205419756.