DNA clamp (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA clamp" in English language version.

refsWebsite

Global rank English rank

29nih.gov

4^th place

21doi.org

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4rcsb.org

8,838^th place

8,783^rd place

3semanticscholar.org

11^th place

8^th place

1uq.edu.au

3,558^th place

2,403^rd place

1harvard.edu

18^th place

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1archive.org

6^th place

archive.org

Lehninger AL (1975). Biochemistry: The Molecular Basis of Cell Structure and Function. New York: Worth Publishers. pp. 894. ISBN 978-0-87901-047-8.

doi.org

PDB: 1W60; Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, et al. (February 2005). "Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design". Proceedings of the National Academy of Sciences of the United States of America. 102 (6): 1871–1876. doi:10.1073/pnas.0406540102. PMC 548533. PMID 15681588.
Mizrahi V, Henrie RN, Marlier JF, Johnson KA, Benkovic SJ (July 1985). "Rate-limiting steps in the DNA polymerase I reaction pathway". Biochemistry. 24 (15): 4010–4018. doi:10.1021/bi00336a031. PMID 3902078.
Bruck I, O'Donnell M (2001). "The ring-type polymerase sliding clamp family". Genome Biology. 2 (1): REVIEWS3001. doi:10.1186/gb-2001-2-1-reviews3001. PMC 150441. PMID 11178284.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.
Matsumiya S, Ishino Y, Morikawa K (January 2001). "Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus". Protein Science. 10 (1): 17–23. doi:10.1110/ps.36401. PMC 2249843. PMID 11266590.
PDB: 1MMI; Oakley AJ, Prosselkov P, Wijffels G, Beck JL, Wilce MC, Dixon NE (July 2003). "Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III" (PDF). Acta Crystallographica. Section D, Biological Crystallography. 59 (Pt 7): 1192–1199. Bibcode:2003AcCrD..59.1192O. doi:10.1107/S0907444903009958. PMID 12832762.
Stukenberg PT, Studwell-Vaughan PS, O'Donnell M (June 1991). "Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme". The Journal of Biological Chemistry. 266 (17): 11328–11334. doi:10.1016/S0021-9258(18)99166-0. PMID 2040637.
Yin Z, Wang Y, Whittell LR, Jergic S, Liu M, Harry E, et al. (April 2014). "DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs". Chemistry & Biology. 21 (4): 481–487. doi:10.1016/j.chembiol.2014.02.009. PMID 24631121.
PDB: 1AXC; Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (October 1996). "Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA". Cell. 87 (2): 297–306. doi:10.1016/S0092-8674(00)81347-1. PMID 8861913. S2CID 17461501.
Suzuka I, Hata S, Matsuoka M, Kosugi S, Hashimoto J (January 1991). "Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxiliary protein) gene in plants". European Journal of Biochemistry. 195 (2): 571–575. doi:10.1111/j.1432-1033.1991.tb15739.x. PMID 1671766.
Marshall AC, Kroker AJ, Murray LA, Gronthos K, Rajapaksha H, Wegener KL, Bruning JB (March 2017). "Structure of the sliding clamp from the fungal pathogen Aspergillus fumigatus (AfumPCNA) and interactions with Human p21". The FEBS Journal. 284 (6): 985–1002. doi:10.1111/febs.14035. PMID 28165677.
Majka J, Burgers PM (2004). "The PCNA-RFC families of DNA clamps and clamp loaders". Progress in Nucleic Acid Research and Molecular Biology. 78: 227–260. doi:10.1016/S0079-6603(04)78006-X. ISBN 9780125400787. PMID 15210332.
Zheng F, Georgescu RE, Yao NY, O'Donnell ME, Li H (April 2022). "DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp". Nature Structural & Molecular Biology. 29 (4): 376–385. doi:10.1038/s41594-022-00742-6. PMC 9010301. PMID 35314830.
Pan M, Kelman LM, Kelman Z (January 2011). "The archaeal PCNA proteins". Biochemical Society Transactions. 39 (1): 20–24. doi:10.1042/bst0390020. PMID 21265741.
MacNeill SA (August 2016). "PCNA-binding proteins in the archaea: novel functionality beyond the conserved core". Current Genetics. 62 (3): 527–532. doi:10.1007/s00294-016-0577-3. PMC 4929162. PMID 26886233.
Van Etten JL, Agarkova IV, Dunigan DD (December 2019). "Chloroviruses". Viruses. 12 (1): 20. doi:10.3390/v12010020. PMC 7019647. PMID 31878033.
Fu Y, Wang R, Liang A (June 2018). "Function analysis of Ac-PCNA and Sf-PCNA during the Autographa californica multiple nucleopolyhedrovirus infection process". Molecular and Cellular Biochemistry. 443 (1–2): 57–68. doi:10.1007/s11010-017-3210-y. PMID 29075988. S2CID 9507736.
PDB: 1CZD; Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J (March 2000). "Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage". Journal of Molecular Biology. 296 (5): 1215–1223. doi:10.1006/jmbi.1999.3511. PMID 10698628.
Shamoo Y, Steitz TA (October 1999). "Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex". Cell. 99 (2): 155–166. doi:10.1016/S0092-8674(00)81647-5. PMID 10535734. S2CID 18103622.
Zuccola HJ, Filman DJ, Coen DM, Hogle JM (February 2000). "The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase". Molecular Cell. 5 (2): 267–278. doi:10.1016/S1097-2765(00)80422-0. PMID 10882068.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.

harvard.edu

ui.adsabs.harvard.edu

PDB: 1MMI; Oakley AJ, Prosselkov P, Wijffels G, Beck JL, Wilce MC, Dixon NE (July 2003). "Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III" (PDF). Acta Crystallographica. Section D, Biological Crystallography. 59 (Pt 7): 1192–1199. Bibcode:2003AcCrD..59.1192O. doi:10.1107/S0907444903009958. PMID 12832762.

nih.gov

pubmed.ncbi.nlm.nih.gov

PDB: 1W60; Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, et al. (February 2005). "Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design". Proceedings of the National Academy of Sciences of the United States of America. 102 (6): 1871–1876. doi:10.1073/pnas.0406540102. PMC 548533. PMID 15681588.
Mizrahi V, Henrie RN, Marlier JF, Johnson KA, Benkovic SJ (July 1985). "Rate-limiting steps in the DNA polymerase I reaction pathway". Biochemistry. 24 (15): 4010–4018. doi:10.1021/bi00336a031. PMID 3902078.
Bruck I, O'Donnell M (2001). "The ring-type polymerase sliding clamp family". Genome Biology. 2 (1): REVIEWS3001. doi:10.1186/gb-2001-2-1-reviews3001. PMC 150441. PMID 11178284.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.
Matsumiya S, Ishino Y, Morikawa K (January 2001). "Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus". Protein Science. 10 (1): 17–23. doi:10.1110/ps.36401. PMC 2249843. PMID 11266590.
PDB: 1MMI; Oakley AJ, Prosselkov P, Wijffels G, Beck JL, Wilce MC, Dixon NE (July 2003). "Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III" (PDF). Acta Crystallographica. Section D, Biological Crystallography. 59 (Pt 7): 1192–1199. Bibcode:2003AcCrD..59.1192O. doi:10.1107/S0907444903009958. PMID 12832762.
Stukenberg PT, Studwell-Vaughan PS, O'Donnell M (June 1991). "Mechanism of the sliding beta-clamp of DNA polymerase III holoenzyme". The Journal of Biological Chemistry. 266 (17): 11328–11334. doi:10.1016/S0021-9258(18)99166-0. PMID 2040637.
Yin Z, Wang Y, Whittell LR, Jergic S, Liu M, Harry E, et al. (April 2014). "DNA replication is the target for the antibacterial effects of nonsteroidal anti-inflammatory drugs". Chemistry & Biology. 21 (4): 481–487. doi:10.1016/j.chembiol.2014.02.009. PMID 24631121.
PDB: 1AXC; Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (October 1996). "Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA". Cell. 87 (2): 297–306. doi:10.1016/S0092-8674(00)81347-1. PMID 8861913. S2CID 17461501.
Suzuka I, Hata S, Matsuoka M, Kosugi S, Hashimoto J (January 1991). "Highly conserved structure of proliferating cell nuclear antigen (DNA polymerase delta auxiliary protein) gene in plants". European Journal of Biochemistry. 195 (2): 571–575. doi:10.1111/j.1432-1033.1991.tb15739.x. PMID 1671766.
Marshall AC, Kroker AJ, Murray LA, Gronthos K, Rajapaksha H, Wegener KL, Bruning JB (March 2017). "Structure of the sliding clamp from the fungal pathogen Aspergillus fumigatus (AfumPCNA) and interactions with Human p21". The FEBS Journal. 284 (6): 985–1002. doi:10.1111/febs.14035. PMID 28165677.
Majka J, Burgers PM (2004). "The PCNA-RFC families of DNA clamps and clamp loaders". Progress in Nucleic Acid Research and Molecular Biology. 78: 227–260. doi:10.1016/S0079-6603(04)78006-X. ISBN 9780125400787. PMID 15210332.
Zheng F, Georgescu RE, Yao NY, O'Donnell ME, Li H (April 2022). "DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp". Nature Structural & Molecular Biology. 29 (4): 376–385. doi:10.1038/s41594-022-00742-6. PMC 9010301. PMID 35314830.
Pan M, Kelman LM, Kelman Z (January 2011). "The archaeal PCNA proteins". Biochemical Society Transactions. 39 (1): 20–24. doi:10.1042/bst0390020. PMID 21265741.
MacNeill SA (August 2016). "PCNA-binding proteins in the archaea: novel functionality beyond the conserved core". Current Genetics. 62 (3): 527–532. doi:10.1007/s00294-016-0577-3. PMC 4929162. PMID 26886233.
Van Etten JL, Agarkova IV, Dunigan DD (December 2019). "Chloroviruses". Viruses. 12 (1): 20. doi:10.3390/v12010020. PMC 7019647. PMID 31878033.
Fu Y, Wang R, Liang A (June 2018). "Function analysis of Ac-PCNA and Sf-PCNA during the Autographa californica multiple nucleopolyhedrovirus infection process". Molecular and Cellular Biochemistry. 443 (1–2): 57–68. doi:10.1007/s11010-017-3210-y. PMID 29075988. S2CID 9507736.
PDB: 1CZD; Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J (March 2000). "Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage". Journal of Molecular Biology. 296 (5): 1215–1223. doi:10.1006/jmbi.1999.3511. PMID 10698628.
Shamoo Y, Steitz TA (October 1999). "Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex". Cell. 99 (2): 155–166. doi:10.1016/S0092-8674(00)81647-5. PMID 10535734. S2CID 18103622.
Zuccola HJ, Filman DJ, Coen DM, Hogle JM (February 2000). "The crystal structure of an unusual processivity factor, herpes simplex virus UL42, bound to the C terminus of its cognate polymerase". Molecular Cell. 5 (2): 267–278. doi:10.1016/S1097-2765(00)80422-0. PMID 10882068.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.

ncbi.nlm.nih.gov

PDB: 1W60; Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, et al. (February 2005). "Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design". Proceedings of the National Academy of Sciences of the United States of America. 102 (6): 1871–1876. doi:10.1073/pnas.0406540102. PMC 548533. PMID 15681588.
Bruck I, O'Donnell M (2001). "The ring-type polymerase sliding clamp family". Genome Biology. 2 (1): REVIEWS3001. doi:10.1186/gb-2001-2-1-reviews3001. PMC 150441. PMID 11178284.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.
Matsumiya S, Ishino Y, Morikawa K (January 2001). "Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus". Protein Science. 10 (1): 17–23. doi:10.1110/ps.36401. PMC 2249843. PMID 11266590.
Zheng F, Georgescu RE, Yao NY, O'Donnell ME, Li H (April 2022). "DNA is loaded through the 9-1-1 DNA checkpoint clamp in the opposite direction of the PCNA clamp". Nature Structural & Molecular Biology. 29 (4): 376–385. doi:10.1038/s41594-022-00742-6. PMC 9010301. PMID 35314830.
MacNeill SA (August 2016). "PCNA-binding proteins in the archaea: novel functionality beyond the conserved core". Current Genetics. 62 (3): 527–532. doi:10.1007/s00294-016-0577-3. PMC 4929162. PMID 26886233.
Van Etten JL, Agarkova IV, Dunigan DD (December 2019). "Chloroviruses". Viruses. 12 (1): 20. doi:10.3390/v12010020. PMC 7019647. PMID 31878033.
Neuwald AF, Poleksic A (September 2000). "PSI-BLAST searches using hidden markov models of structural repeats: prediction of an unusual sliding DNA clamp and of beta-propellers in UV-damaged DNA-binding protein". Nucleic Acids Research. 28 (18): 3570–3580. doi:10.1093/nar/28.18.3570. PMC 110734. PMID 10982878.

rcsb.org

PDB: 1W60; Kontopidis G, Wu SY, Zheleva DI, Taylor P, McInnes C, Lane DP, et al. (February 2005). "Structural and biochemical studies of human proliferating cell nuclear antigen complexes provide a rationale for cyclin association and inhibitor design". Proceedings of the National Academy of Sciences of the United States of America. 102 (6): 1871–1876. doi:10.1073/pnas.0406540102. PMC 548533. PMID 15681588.
PDB: 1MMI; Oakley AJ, Prosselkov P, Wijffels G, Beck JL, Wilce MC, Dixon NE (July 2003). "Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III" (PDF). Acta Crystallographica. Section D, Biological Crystallography. 59 (Pt 7): 1192–1199. Bibcode:2003AcCrD..59.1192O. doi:10.1107/S0907444903009958. PMID 12832762.
PDB: 1AXC; Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (October 1996). "Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA". Cell. 87 (2): 297–306. doi:10.1016/S0092-8674(00)81347-1. PMID 8861913. S2CID 17461501.
PDB: 1CZD; Moarefi I, Jeruzalmi D, Turner J, O'Donnell M, Kuriyan J (March 2000). "Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage". Journal of Molecular Biology. 296 (5): 1215–1223. doi:10.1006/jmbi.1999.3511. PMID 10698628.

semanticscholar.org

api.semanticscholar.org

PDB: 1AXC; Gulbis JM, Kelman Z, Hurwitz J, O'Donnell M, Kuriyan J (October 1996). "Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA". Cell. 87 (2): 297–306. doi:10.1016/S0092-8674(00)81347-1. PMID 8861913. S2CID 17461501.
Fu Y, Wang R, Liang A (June 2018). "Function analysis of Ac-PCNA and Sf-PCNA during the Autographa californica multiple nucleopolyhedrovirus infection process". Molecular and Cellular Biochemistry. 443 (1–2): 57–68. doi:10.1007/s11010-017-3210-y. PMID 29075988. S2CID 9507736.
Shamoo Y, Steitz TA (October 1999). "Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex". Cell. 99 (2): 155–166. doi:10.1016/S0092-8674(00)81647-5. PMID 10535734. S2CID 18103622.

uq.edu.au

espace.library.uq.edu.au

PDB: 1MMI; Oakley AJ, Prosselkov P, Wijffels G, Beck JL, Wilce MC, Dixon NE (July 2003). "Flexibility revealed by the 1.85 A crystal structure of the beta sliding-clamp subunit of Escherichia coli DNA polymerase III" (PDF). Acta Crystallographica. Section D, Biological Crystallography. 59 (Pt 7): 1192–1199. Bibcode:2003AcCrD..59.1192O. doi:10.1107/S0907444903009958. PMID 12832762.