DNA footprinting (English Wikipedia)

Analysis of information sources in references of the Wikipedia article "DNA footprinting" in English language version.

refsWebsite

Global rank English rank

26nih.gov

4^th place

16doi.org

2^nd place

5harvard.edu

18^th place

17^th place

2semanticscholar.org

11^th place

8^th place

doi.org

Galas, D; Schmitz, A (1978). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–70. doi:10.1093/nar/5.9.3157. PMC 342238. PMID 212715.
Hampshire, A; Rusling, D; Broughton-Head, V; Fox, K (2007). "Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands". Methods. 42 (2): 128–140. doi:10.1016/j.ymeth.2007.01.002. PMID 17472895.
Becker, M.M.; Wang, J.C. (1984). "Use of Light for Footprinting DNA in vivo". Nature. 309 (5970): 682–687. Bibcode:1984Natur.309..682B. doi:10.1038/309682a0. PMID 6728031. S2CID 31638231.
Axelrod, J.D.; Majors, J (1989). "An Improved Method for Photofootprinting Yeast Genes In Vivo Using Taq Polymerase". Nucleic Acids Res. 17 (1): 171–183. doi:10.1093/NAR/17.1.171. PMC 331543. PMID 2643080.
Becker, M.M.; Wang, Z.; Grossmann, G.; Becherer, K.A. (1989). "Genomic Footprinting in Mammalian Cells With Ultraviolet Light". PNAS. 86 (14): 5315–5319. Bibcode:1989PNAS...86.5315B. doi:10.1073/PNAS.86.14.5315. PMC 297612. PMID 2748587.
Ephrussi, A.; Church, G.M.; Tonegawa, S.; Gilbert, W. (1985). "B Lineage-Specific Interactions of an Immunoglobulin Enhancer With Cellular Factors In Vivo". Science. 227 (4683): 134–140. Bibcode:1985Sci...227..134E. doi:10.1126/science.3917574. PMID 3917574.
Zaret, K (1997). "Editorial". Methods. 11 (2): 149–150. doi:10.1006/meth.1996.0400. PMID 8993026.
Kovacs, Krisztian A.; Steinmann, Myriam; Magistretti, Pierre J.; Halfon, Olivier; Cardinaux, Jean-Rene (2006). "C/EBPβ couples dopamine signalling to substance P precursor gene expression in striatal neurones". Journal of Neurochemistry. 98 (5): 1390–1399. doi:10.1111/j.1471-4159.2006.03957.x. PMID 16771829. S2CID 36225447.
Song, L; Crawford, GE (Feb 2010). "DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells". Cold Spring Harbor Protocols. 2010 (2): pdb.prot5384+. doi:10.1101/pdb.prot5384. PMC 3627383. PMID 20150147.
Giresi, PG; Kim, J; McDaniell, RM; Iyer, VR; Lieb, JD (Jun 2007). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–85. doi:10.1101/gr.5533506. PMC 1891346. PMID 17179217.
Thurman, RE; et al. (Sep 2012). "The accessible chromatin landscape of the human genome". Nature. 489 (7414): 75–82. Bibcode:2012Natur.489...75T. doi:10.1038/nature11232. PMC 3721348. PMID 22955617.
Gusmao, EG; Dieterich, C; Zenke, M; Costa, IG (Aug 2014). "Detection of Active Transcription Factor Binding Sites with the Combination of DNase Hypersensitivity and Histone Modifications". Bioinformatics. 30 (22): 3143–51. doi:10.1093/bioinformatics/btu519. PMID 25086003.
Boyle, AP; et al. (Mar 2011). "High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells". Genome Research. 21 (3): 456–464. doi:10.1101/gr.112656.110. PMC 3044859. PMID 21106903.
Neph, S; et al. (Sep 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature. 489 (7414): 83–90. Bibcode:2012Natur.489...83N. doi:10.1038/nature11212. PMC 3736582. PMID 22955618.
Pique-Regi, R; et al. (Mar 2011). "Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data". Genome Research. 21 (3): 447–455. doi:10.1101/gr.112623.110. PMC 3044858. PMID 21106904.
Cuellar-Partida, G; et al. (Jan 2012). "Epigenetic priors for identifying active transcription factor binding sites". Bioinformatics. 28 (1): 56–62. doi:10.1093/bioinformatics/btr614. PMC 3244768. PMID 22072382.

harvard.edu

ui.adsabs.harvard.edu

Becker, M.M.; Wang, J.C. (1984). "Use of Light for Footprinting DNA in vivo". Nature. 309 (5970): 682–687. Bibcode:1984Natur.309..682B. doi:10.1038/309682a0. PMID 6728031. S2CID 31638231.
Becker, M.M.; Wang, Z.; Grossmann, G.; Becherer, K.A. (1989). "Genomic Footprinting in Mammalian Cells With Ultraviolet Light". PNAS. 86 (14): 5315–5319. Bibcode:1989PNAS...86.5315B. doi:10.1073/PNAS.86.14.5315. PMC 297612. PMID 2748587.
Ephrussi, A.; Church, G.M.; Tonegawa, S.; Gilbert, W. (1985). "B Lineage-Specific Interactions of an Immunoglobulin Enhancer With Cellular Factors In Vivo". Science. 227 (4683): 134–140. Bibcode:1985Sci...227..134E. doi:10.1126/science.3917574. PMID 3917574.
Thurman, RE; et al. (Sep 2012). "The accessible chromatin landscape of the human genome". Nature. 489 (7414): 75–82. Bibcode:2012Natur.489...75T. doi:10.1038/nature11232. PMC 3721348. PMID 22955617.
Neph, S; et al. (Sep 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature. 489 (7414): 83–90. Bibcode:2012Natur.489...83N. doi:10.1038/nature11212. PMC 3736582. PMID 22955618.

nih.gov

pubmed.ncbi.nlm.nih.gov

Galas, D; Schmitz, A (1978). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–70. doi:10.1093/nar/5.9.3157. PMC 342238. PMID 212715.
Hampshire, A; Rusling, D; Broughton-Head, V; Fox, K (2007). "Footprinting: A method for determining the sequence selectivity, affinity and kinetics of DNA-binding ligands". Methods. 42 (2): 128–140. doi:10.1016/j.ymeth.2007.01.002. PMID 17472895.
Becker, M.M.; Wang, J.C. (1984). "Use of Light for Footprinting DNA in vivo". Nature. 309 (5970): 682–687. Bibcode:1984Natur.309..682B. doi:10.1038/309682a0. PMID 6728031. S2CID 31638231.
Axelrod, J.D.; Majors, J (1989). "An Improved Method for Photofootprinting Yeast Genes In Vivo Using Taq Polymerase". Nucleic Acids Res. 17 (1): 171–183. doi:10.1093/NAR/17.1.171. PMC 331543. PMID 2643080.
Becker, M.M.; Wang, Z.; Grossmann, G.; Becherer, K.A. (1989). "Genomic Footprinting in Mammalian Cells With Ultraviolet Light". PNAS. 86 (14): 5315–5319. Bibcode:1989PNAS...86.5315B. doi:10.1073/PNAS.86.14.5315. PMC 297612. PMID 2748587.
Ephrussi, A.; Church, G.M.; Tonegawa, S.; Gilbert, W. (1985). "B Lineage-Specific Interactions of an Immunoglobulin Enhancer With Cellular Factors In Vivo". Science. 227 (4683): 134–140. Bibcode:1985Sci...227..134E. doi:10.1126/science.3917574. PMID 3917574.
Zaret, K (1997). "Editorial". Methods. 11 (2): 149–150. doi:10.1006/meth.1996.0400. PMID 8993026.
Kovacs, Krisztian A.; Steinmann, Myriam; Magistretti, Pierre J.; Halfon, Olivier; Cardinaux, Jean-Rene (2006). "C/EBPβ couples dopamine signalling to substance P precursor gene expression in striatal neurones". Journal of Neurochemistry. 98 (5): 1390–1399. doi:10.1111/j.1471-4159.2006.03957.x. PMID 16771829. S2CID 36225447.
Song, L; Crawford, GE (Feb 2010). "DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells". Cold Spring Harbor Protocols. 2010 (2): pdb.prot5384+. doi:10.1101/pdb.prot5384. PMC 3627383. PMID 20150147.
Giresi, PG; Kim, J; McDaniell, RM; Iyer, VR; Lieb, JD (Jun 2007). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–85. doi:10.1101/gr.5533506. PMC 1891346. PMID 17179217.
Thurman, RE; et al. (Sep 2012). "The accessible chromatin landscape of the human genome". Nature. 489 (7414): 75–82. Bibcode:2012Natur.489...75T. doi:10.1038/nature11232. PMC 3721348. PMID 22955617.
Gusmao, EG; Dieterich, C; Zenke, M; Costa, IG (Aug 2014). "Detection of Active Transcription Factor Binding Sites with the Combination of DNase Hypersensitivity and Histone Modifications". Bioinformatics. 30 (22): 3143–51. doi:10.1093/bioinformatics/btu519. PMID 25086003.
Boyle, AP; et al. (Mar 2011). "High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells". Genome Research. 21 (3): 456–464. doi:10.1101/gr.112656.110. PMC 3044859. PMID 21106903.
Neph, S; et al. (Sep 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature. 489 (7414): 83–90. Bibcode:2012Natur.489...83N. doi:10.1038/nature11212. PMC 3736582. PMID 22955618.
Pique-Regi, R; et al. (Mar 2011). "Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data". Genome Research. 21 (3): 447–455. doi:10.1101/gr.112623.110. PMC 3044858. PMID 21106904.
Cuellar-Partida, G; et al. (Jan 2012). "Epigenetic priors for identifying active transcription factor binding sites". Bioinformatics. 28 (1): 56–62. doi:10.1093/bioinformatics/btr614. PMC 3244768. PMID 22072382.

ncbi.nlm.nih.gov

Galas, D; Schmitz, A (1978). "DNAse footprinting: a simple method for the detection of protein-DNA binding specificity". Nucleic Acids Research. 5 (9): 3157–70. doi:10.1093/nar/5.9.3157. PMC 342238. PMID 212715.
Axelrod, J.D.; Majors, J (1989). "An Improved Method for Photofootprinting Yeast Genes In Vivo Using Taq Polymerase". Nucleic Acids Res. 17 (1): 171–183. doi:10.1093/NAR/17.1.171. PMC 331543. PMID 2643080.
Becker, M.M.; Wang, Z.; Grossmann, G.; Becherer, K.A. (1989). "Genomic Footprinting in Mammalian Cells With Ultraviolet Light". PNAS. 86 (14): 5315–5319. Bibcode:1989PNAS...86.5315B. doi:10.1073/PNAS.86.14.5315. PMC 297612. PMID 2748587.
Song, L; Crawford, GE (Feb 2010). "DNase-seq: a high-resolution technique for mapping active gene regulatory elements across the genome from mammalian cells". Cold Spring Harbor Protocols. 2010 (2): pdb.prot5384+. doi:10.1101/pdb.prot5384. PMC 3627383. PMID 20150147.
Giresi, PG; Kim, J; McDaniell, RM; Iyer, VR; Lieb, JD (Jun 2007). "FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin". Genome Research. 17 (6): 877–85. doi:10.1101/gr.5533506. PMC 1891346. PMID 17179217.
Thurman, RE; et al. (Sep 2012). "The accessible chromatin landscape of the human genome". Nature. 489 (7414): 75–82. Bibcode:2012Natur.489...75T. doi:10.1038/nature11232. PMC 3721348. PMID 22955617.
Boyle, AP; et al. (Mar 2011). "High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells". Genome Research. 21 (3): 456–464. doi:10.1101/gr.112656.110. PMC 3044859. PMID 21106903.
Neph, S; et al. (Sep 2012). "An expansive human regulatory lexicon encoded in transcription factor footprints". Nature. 489 (7414): 83–90. Bibcode:2012Natur.489...83N. doi:10.1038/nature11212. PMC 3736582. PMID 22955618.
Pique-Regi, R; et al. (Mar 2011). "Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data". Genome Research. 21 (3): 447–455. doi:10.1101/gr.112623.110. PMC 3044858. PMID 21106904.
Cuellar-Partida, G; et al. (Jan 2012). "Epigenetic priors for identifying active transcription factor binding sites". Bioinformatics. 28 (1): 56–62. doi:10.1093/bioinformatics/btr614. PMC 3244768. PMID 22072382.

semanticscholar.org

api.semanticscholar.org

Becker, M.M.; Wang, J.C. (1984). "Use of Light for Footprinting DNA in vivo". Nature. 309 (5970): 682–687. Bibcode:1984Natur.309..682B. doi:10.1038/309682a0. PMID 6728031. S2CID 31638231.
Kovacs, Krisztian A.; Steinmann, Myriam; Magistretti, Pierre J.; Halfon, Olivier; Cardinaux, Jean-Rene (2006). "C/EBPβ couples dopamine signalling to substance P precursor gene expression in striatal neurones". Journal of Neurochemistry. 98 (5): 1390–1399. doi:10.1111/j.1471-4159.2006.03957.x. PMID 16771829. S2CID 36225447.